Wall clock time and date at job start Fri Apr 10 2020 18:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35210 * 126.06075 * 2 1 4 4 C 1.40463 * 107.86850 * 180.15285 * 3 2 1 5 5 N 1.39925 * 125.98615 * 179.88944 * 4 3 2 6 6 C 1.34777 * 119.99564 * 359.71572 * 5 4 3 7 7 O 1.21386 * 120.00533 * 0.02562 * 6 5 4 8 8 C 1.49346 * 120.00052 * 180.02562 * 6 5 4 9 9 O 1.21363 * 119.99493 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00023 * 179.73002 * 8 6 5 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 6 12 12 C 1.52992 * 109.47161 * 179.97438 * 11 10 8 13 13 N 1.46906 * 109.47341 * 179.97438 * 12 11 10 14 14 C 1.46898 * 111.00191 * 169.99469 * 13 12 11 15 15 C 1.46894 * 110.99871 * 293.95610 * 13 12 11 16 16 N 1.31273 * 108.03591 * 359.63154 * 4 3 2 17 17 N 1.34987 * 126.05968 * 179.74939 * 2 1 3 18 18 C 1.46492 * 125.97441 * 359.94364 * 17 2 1 19 19 C 1.50706 * 109.47532 * 270.01787 * 18 17 2 20 20 H 1.08004 * 119.99218 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00367 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00230 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99869 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47121 * 90.00644 * 23 21 19 25 25 H 1.48506 * 109.46986 * 210.00058 * 23 21 19 26 26 H 1.48495 * 109.47381 * 329.99931 * 23 21 19 27 27 H 1.08997 * 109.47230 * 270.25196 * 1 2 3 28 28 H 1.09000 * 109.47408 * 30.25213 * 1 2 3 29 29 H 1.09003 * 109.46794 * 150.24910 * 1 2 3 30 30 H 1.07998 * 126.07050 * 0.02562 * 3 2 1 31 31 H 0.96996 * 120.00549 * 179.71976 * 5 4 3 32 32 H 0.96998 * 120.00525 * 359.97438 * 10 8 6 33 33 H 1.09004 * 109.46587 * 299.99661 * 11 10 8 34 34 H 1.08998 * 109.47213 * 59.99069 * 11 10 8 35 35 H 1.09004 * 109.47116 * 299.99365 * 12 11 10 36 36 H 1.08998 * 109.47794 * 59.99453 * 12 11 10 37 37 H 1.09005 * 109.46709 * 60.00092 * 14 13 12 38 38 H 1.08994 * 109.46942 * 180.02562 * 14 13 12 39 39 H 1.08994 * 109.47165 * 300.00237 * 14 13 12 40 40 H 1.09003 * 109.47674 * 59.99118 * 15 13 12 41 41 H 1.09002 * 109.47195 * 179.97438 * 15 13 12 42 42 H 1.09005 * 109.46894 * 299.99453 * 15 13 12 43 43 H 1.08998 * 109.47231 * 30.01867 * 18 17 2 44 44 H 1.08999 * 109.47200 * 150.01786 * 18 17 2 45 45 H 0.96993 * 119.99864 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3029 1.0930 0.0000 4 6 3.6374 0.6545 -0.0036 5 7 4.7719 1.4734 -0.0069 6 6 4.6351 2.8142 -0.0127 7 8 3.5277 3.3114 -0.0145 8 6 5.8460 3.6884 -0.0168 9 8 6.9532 3.1913 -0.0155 10 7 5.7092 5.0291 -0.0281 11 6 6.8970 5.8866 -0.0327 12 6 6.4662 7.3546 -0.0463 13 7 7.6573 8.2145 -0.0503 14 6 7.2943 9.6156 -0.3014 15 6 8.4067 8.0818 1.2061 16 7 3.6338 -0.6582 0.0024 17 7 2.3016 -1.0912 0.0048 18 6 1.8498 -2.4847 0.0120 19 6 1.6955 -2.9555 1.4353 20 1 1.9120 -2.2835 2.2527 21 6 1.2780 -4.2438 1.6940 22 7 1.1429 -4.6544 2.9361 23 14 0.9029 -5.4056 0.2802 24 1 2.1354 -6.1449 -0.0933 25 1 -0.1459 -6.3706 0.6974 26 1 0.4209 -4.6249 -0.8875 27 1 -0.3633 0.0045 1.0276 28 1 -0.3634 0.8877 -0.5177 29 1 -0.3633 -0.8923 -0.5100 30 1 1.9716 2.1209 0.0004 31 1 5.6568 1.0762 -0.0051 32 1 4.8243 5.4264 -0.0339 33 1 7.4905 5.6900 0.8602 34 1 7.4943 5.6753 -0.9197 35 1 5.8730 7.5509 -0.9394 36 1 5.8688 7.5662 0.8405 37 1 6.6166 9.9608 0.4795 38 1 8.1945 10.2301 -0.2995 39 1 6.8024 9.6954 -1.2707 40 1 8.7233 7.0465 1.3328 41 1 9.2835 8.7286 1.1763 42 1 7.7693 8.3715 2.0416 43 1 0.8909 -2.5584 -0.5010 44 1 2.5840 -3.1074 -0.4990 45 1 0.8489 -5.5606 3.1180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320459609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:33 Heat of formation + Delta-G solvation = -0.447785 kcal Electronic energy + Delta-G solvation = -26264.472622 eV Core-core repulsion = 22318.518362 eV Total energy + Delta-G solvation = -3945.954260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.55043 -41.61183 -39.83608 -38.61946 -36.79595 -35.79366 -35.19333 -33.26445 -32.84602 -30.81843 -29.24401 -28.49083 -27.94244 -26.83353 -24.94226 -24.09611 -22.32544 -22.28044 -21.39690 -20.89991 -19.25481 -19.23933 -18.23240 -17.55935 -17.39909 -17.02601 -16.79959 -16.64830 -16.30291 -15.83567 -15.81075 -15.58287 -15.29691 -14.96003 -14.75040 -14.55500 -14.41568 -13.90890 -13.79553 -13.64828 -13.28712 -13.27996 -13.04715 -12.93077 -12.69797 -12.61645 -12.55466 -12.46335 -12.30157 -12.18786 -11.82922 -11.61455 -11.54168 -10.90351 -10.84603 -10.39066 -9.68933 -9.38094 -9.22326 -8.40416 -6.51842 0.01115 0.78858 1.04123 1.35549 1.38264 1.47240 1.67933 1.75088 2.21287 2.26733 2.46640 2.92271 3.02587 3.30534 3.75777 3.76880 3.99869 4.05106 4.28108 4.36553 4.41073 4.50159 4.51077 4.62778 4.64457 4.68583 4.75198 4.81121 4.81900 4.88360 4.89292 5.02088 5.05813 5.06197 5.07844 5.15597 5.22847 5.72946 5.78329 5.96037 5.97663 6.01230 6.12595 6.33240 6.51335 6.53259 6.75393 6.88321 7.12006 8.76141 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.033506 B = 0.001963 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.477429 B =14262.690460 C =14591.845128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.093 3.907 3 C -0.292 4.292 4 C 0.268 3.732 5 N -0.601 5.601 6 C 0.518 3.482 7 O -0.505 6.505 8 C 0.526 3.474 9 O -0.535 6.535 10 N -0.680 5.680 11 C 0.122 3.878 12 C 0.047 3.953 13 N -0.558 5.558 14 C 0.024 3.976 15 C 0.015 3.985 16 N -0.351 5.351 17 N -0.338 5.338 18 C 0.239 3.761 19 C -0.551 4.551 20 H 0.024 0.976 21 C 0.022 3.978 22 N -0.937 5.937 23 Si 0.951 3.049 24 H -0.268 1.268 25 H -0.274 1.274 26 H -0.232 1.232 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.177 0.823 31 H 0.429 0.571 32 H 0.423 0.577 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.031 0.969 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.031 0.969 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.138 26.794 -9.279 29.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C -0.323 4.323 4 C 0.014 3.986 5 N -0.250 5.250 6 C 0.299 3.701 7 O -0.378 6.378 8 C 0.305 3.695 9 O -0.412 6.412 10 N -0.334 5.334 11 C -0.001 4.001 12 C -0.081 4.081 13 N -0.282 5.282 14 C -0.123 4.123 15 C -0.133 4.133 16 N -0.182 5.182 17 N -0.120 5.120 18 C 0.119 3.881 19 C -0.589 4.589 20 H 0.042 0.958 21 C -0.178 4.178 22 N -0.575 5.575 23 Si 0.772 3.228 24 H -0.193 1.193 25 H -0.199 1.199 26 H -0.154 1.154 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.096 0.904 30 H 0.194 0.806 31 H 0.267 0.733 32 H 0.262 0.738 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.096 0.904 44 H 0.066 0.934 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.107 25.409 -9.542 28.327 hybrid contribution -0.739 -0.108 0.959 1.215 sum 7.368 25.301 -8.584 27.715 Atomic orbital electron populations 1.20542 0.84756 1.04972 1.04000 1.21828 0.96899 0.86159 0.98798 1.21497 0.89206 1.00471 1.21100 1.19190 0.88267 0.89315 1.01803 1.42116 1.08123 1.04771 1.70019 1.20332 0.90251 0.82029 0.77500 1.90691 1.26583 1.73927 1.46600 1.19379 0.87669 0.83995 0.78455 1.90809 1.26630 1.74725 1.49038 1.45524 1.12474 1.03957 1.71436 1.21512 0.86203 0.89011 1.03419 1.22230 0.92329 0.90510 1.03040 1.61852 1.22291 1.08684 1.35416 1.22437 1.01333 0.87114 1.01456 1.22542 0.98511 1.03017 0.89209 1.77245 1.00068 1.09942 1.30906 1.48508 1.01678 1.07347 1.54507 1.19842 0.96605 0.74495 0.97110 1.21240 1.47792 0.98769 0.91127 0.95761 1.25830 0.93732 0.99268 0.98988 1.70032 1.46888 1.19184 1.21411 0.85679 0.78970 0.78812 0.79336 1.19285 1.19928 1.15438 0.90232 0.86927 0.90365 0.80576 0.73270 0.73848 0.90935 0.90358 0.88602 0.92991 0.95042 0.90464 0.90553 0.91276 0.90355 0.95051 0.90381 0.93357 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.51 10.11 71.24 0.72 -1.79 16 2 C 0.09 3.65 6.92 41.38 0.29 3.93 16 3 C -0.29 -11.09 9.51 22.11 0.21 -10.88 16 4 C 0.27 10.67 8.10 133.40 1.08 11.75 16 5 N -0.60 -19.28 5.43 -308.89 -1.68 -20.96 16 6 C 0.52 14.37 7.85 87.24 0.69 15.06 16 7 O -0.51 -14.82 13.60 -3.36 -0.05 -14.87 16 8 C 0.53 12.20 7.89 87.24 0.69 12.89 16 9 O -0.54 -14.88 16.48 -3.29 -0.05 -14.93 16 10 N -0.68 -10.85 5.55 -464.52 -2.58 -13.43 16 11 C 0.12 1.64 5.60 86.38 0.48 2.12 16 12 C 0.05 0.45 5.07 86.30 0.44 0.88 16 13 N -0.56 -5.89 5.02 -948.86 -4.76 -10.65 16 14 C 0.02 0.18 9.57 127.69 1.22 1.40 16 15 C 0.02 0.14 9.32 127.69 1.19 1.34 16 16 N -0.35 -16.14 12.60 -54.54 -0.69 -16.82 16 17 N -0.34 -15.42 3.59 -338.46 -1.22 -16.64 16 18 C 0.24 11.22 5.06 85.64 0.43 11.65 16 19 C -0.55 -31.39 9.94 25.60 0.25 -31.13 16 20 H 0.02 1.61 8.06 -2.91 -0.02 1.58 16 21 C 0.02 1.21 5.47 84.65 0.46 1.67 16 22 N -0.94 -56.82 13.96 21.45 0.30 -56.52 16 23 Si 0.95 40.48 27.47 68.60 1.88 42.37 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.23 -8.59 6.54 99.48 0.65 -7.94 16 27 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.08 2.22 7.07 -2.39 -0.02 2.20 16 30 H 0.18 6.09 5.91 -2.91 -0.02 6.07 16 31 H 0.43 12.69 8.29 -92.71 -0.77 11.92 16 32 H 0.42 5.30 7.94 -92.71 -0.74 4.56 16 33 H 0.07 1.07 6.55 -2.39 -0.02 1.05 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 0.72 8.06 -2.39 -0.02 0.70 16 36 H 0.05 0.44 8.12 -2.39 -0.02 0.42 16 37 H 0.03 0.21 8.14 -2.38 -0.02 0.19 16 38 H 0.08 0.48 8.12 -2.39 -0.02 0.47 16 39 H 0.08 0.48 8.12 -2.39 -0.02 0.46 16 40 H 0.07 0.72 6.47 -2.39 -0.02 0.70 16 41 H 0.08 0.62 8.12 -2.39 -0.02 0.61 16 42 H 0.03 0.28 8.14 -2.38 -0.02 0.26 16 43 H 0.08 3.22 6.10 -2.39 -0.01 3.21 16 44 H 0.05 2.24 7.57 -2.39 -0.02 2.22 16 45 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -74.29 378.39 -1.21 -75.50 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: -0.53 Total: 28.06 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 8.16 Total: 18.89 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -10.62 Total: -135.01 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.10 Total: -29.80 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 1.88 Total: 42.37 kcal Total: -74.29 -1.21 -75.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320459609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.053 kcal (2) G-P(sol) polarization free energy of solvation -74.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds