Wall clock time and date at job start Fri Apr 10 2020 18:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.64757 * 2 1 4 4 C 1.34132 * 109.25579 * 180.29064 * 3 2 1 5 5 C 1.34669 * 108.01768 * 359.73289 * 4 3 2 6 6 N 1.35042 * 125.65478 * 179.83106 * 2 1 3 7 7 C 1.46500 * 126.39313 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47473 * 84.71557 * 7 6 2 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.47299 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00376 * 179.97438 * 11 10 9 13 13 O 1.21591 * 119.99538 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00267 * 180.02562 * 12 11 10 15 15 C 1.46490 * 120.00131 * 180.02562 * 14 12 11 16 16 C 1.50704 * 109.47469 * 179.97438 * 15 14 12 17 17 O 1.21297 * 119.99385 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00232 * 179.97438 * 16 15 14 19 19 C 1.37105 * 119.99992 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99645 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00170 * 180.02562 * 19 18 16 22 22 N 1.31404 * 120.00187 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99912 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47196 * 89.99670 * 23 21 19 25 25 H 1.48496 * 109.46936 * 209.99975 * 23 21 19 26 26 H 1.48504 * 109.46969 * 329.99772 * 23 21 19 27 27 H 1.09000 * 109.46880 * 270.17047 * 1 2 3 28 28 H 1.08998 * 109.47353 * 30.17154 * 1 2 3 29 29 H 1.08999 * 109.47119 * 150.17007 * 1 2 3 30 30 H 1.07998 * 125.98893 * 179.72468 * 4 3 2 31 31 H 1.07997 * 126.59117 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47129 * 324.71300 * 7 6 2 33 33 H 1.08998 * 109.46845 * 204.72107 * 7 6 2 34 34 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 35 35 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 36 36 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 37 37 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 38 38 H 1.09001 * 109.47109 * 299.99380 * 10 9 8 39 39 H 1.09002 * 109.47508 * 59.99571 * 10 9 8 40 40 H 0.97003 * 119.99983 * 359.97438 * 11 10 9 41 41 H 0.97004 * 119.99505 * 359.97438 * 14 12 11 42 42 H 1.09004 * 109.47542 * 299.99602 * 15 14 12 43 43 H 1.09004 * 109.47192 * 60.00020 * 15 14 12 44 44 H 0.96997 * 120.00341 * 0.02562 * 18 16 15 45 45 H 0.97001 * 120.00418 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0064 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0032 7 6 1.8426 -2.4909 0.0079 8 6 1.5585 -2.9398 -1.4269 9 6 1.0863 -4.3952 -1.4219 10 6 0.8028 -4.8442 -2.8568 11 7 0.3512 -6.2379 -2.8521 12 6 0.0408 -6.8496 -4.0123 13 8 0.1351 -6.2446 -5.0627 14 7 -0.3751 -8.1316 -4.0079 15 6 -0.7119 -8.7967 -5.2689 16 6 -1.1445 -10.2131 -4.9900 17 8 -1.1694 -10.6261 -3.8498 18 7 -1.5046 -11.0204 -6.0073 19 6 -1.8976 -12.3092 -5.7536 20 1 -1.9190 -12.6772 -4.7384 21 6 -2.2684 -13.1417 -6.8024 22 7 -2.6456 -14.3767 -6.5591 23 14 -2.2307 -12.5053 -8.5583 24 1 -0.8944 -12.7667 -9.1510 25 1 -3.2716 -13.1990 -9.3586 26 1 -2.4962 -11.0442 -8.5610 27 1 -0.3633 0.0031 1.0277 28 1 -0.3634 0.8884 -0.5165 29 1 -0.3633 -0.8915 -0.5112 30 1 4.4097 1.3412 -0.0122 31 1 4.4776 -1.2831 -0.0089 32 1 0.9328 -2.5761 0.6021 33 1 2.6188 -3.1229 0.4394 34 1 2.4683 -2.8547 -2.0212 35 1 0.7822 -2.3078 -1.8583 36 1 1.8623 -5.0274 -0.9903 37 1 0.1765 -4.4799 -0.8278 38 1 0.0270 -4.2121 -3.2887 39 1 1.7129 -4.7595 -3.4506 40 1 0.2757 -6.7205 -2.0141 41 1 -0.4506 -8.6141 -3.1698 42 1 -1.5236 -8.2583 -5.7582 43 1 0.1624 -8.8057 -5.9198 44 1 -1.4850 -10.6900 -6.9190 45 1 -2.9041 -14.9581 -7.2913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323069250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:39 Heat of formation + Delta-G solvation = -13.603211 kcal Electronic energy + Delta-G solvation = -25363.939972 eV Core-core repulsion = 21417.415250 eV Total energy + Delta-G solvation = -3946.524722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.47503 -39.99911 -38.46887 -36.95277 -34.94233 -34.49126 -33.76728 -32.45460 -32.12321 -31.81985 -28.87954 -27.49054 -27.04424 -24.61218 -23.72584 -22.00831 -21.75025 -20.77405 -20.09785 -19.68149 -18.86369 -18.11458 -17.41565 -16.50120 -16.44949 -15.84242 -15.62185 -15.58893 -15.00350 -14.87937 -14.42979 -14.40194 -14.21812 -14.07107 -13.60894 -13.49361 -13.38761 -13.17314 -12.87161 -12.79565 -12.53138 -12.41111 -12.33419 -12.18983 -11.98438 -11.86041 -11.32336 -11.25242 -10.66378 -10.32183 -10.21297 -10.08702 -9.98721 -9.72480 -9.31205 -8.80077 -8.74999 -8.72202 -8.33193 -6.43420 -3.96197 1.63802 2.29789 2.69204 2.79429 2.97734 3.02555 3.10890 3.26322 3.54524 4.00062 4.01258 4.05216 4.11940 4.19869 4.36264 4.51023 4.54518 4.59446 4.78699 4.82593 4.86988 5.02316 5.07850 5.11690 5.11745 5.18335 5.31458 5.43469 5.49795 5.61553 5.61820 5.69829 5.77060 5.81991 5.90759 6.35144 6.39404 6.58367 6.78939 6.94498 7.42195 7.74611 7.97287 8.10056 8.41452 8.66068 8.78912 9.27109 9.60533 10.68684 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.041808 B = 0.001483 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.560998 B =18880.062608 C =19060.235638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.205 3.795 3 N -0.495 5.495 4 C -0.029 4.029 5 C -0.059 4.059 6 N -0.455 5.455 7 C 0.103 3.897 8 C -0.132 4.132 9 C -0.129 4.129 10 C 0.141 3.859 11 N -0.750 5.750 12 C 0.705 3.295 13 O -0.598 6.598 14 N -0.725 5.725 15 C 0.126 3.874 16 C 0.438 3.562 17 O -0.580 6.580 18 N -0.576 5.576 19 C -0.311 4.311 20 H 0.121 0.879 21 C 0.046 3.954 22 N -0.874 5.874 23 Si 0.879 3.121 24 H -0.269 1.269 25 H -0.275 1.275 26 H -0.267 1.267 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.397 0.603 41 H 0.408 0.592 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.375 0.625 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.214 25.004 12.318 29.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.057 4.057 3 N -0.214 5.214 4 C -0.177 4.177 5 C -0.191 4.191 6 N -0.139 5.139 7 C -0.019 4.019 8 C -0.171 4.171 9 C -0.168 4.168 10 C 0.017 3.983 11 N -0.407 5.407 12 C 0.404 3.596 13 O -0.477 6.477 14 N -0.382 5.382 15 C -0.003 4.003 16 C 0.224 3.776 17 O -0.465 6.465 18 N -0.213 5.213 19 C -0.440 4.440 20 H 0.139 0.861 21 C -0.158 4.158 22 N -0.513 5.513 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.186 0.814 31 H 0.191 0.809 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.231 0.769 41 H 0.245 0.755 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.208 0.792 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.870 25.697 12.016 29.722 hybrid contribution 0.380 -1.082 -0.718 1.352 sum 9.250 24.616 11.299 28.621 Atomic orbital electron populations 1.20220 0.84987 1.04199 1.03529 1.23337 0.95754 0.81399 1.05243 1.70257 1.02354 1.28415 1.20385 1.22300 0.94790 0.92851 1.07781 1.22723 0.87096 0.96934 1.12376 1.45456 1.06515 1.07372 1.54519 1.21939 1.02136 0.79212 0.98641 1.21865 1.03121 0.96402 0.95686 1.21713 1.02444 0.95495 0.97100 1.21084 1.00094 0.81152 0.95995 1.45015 1.73605 1.14024 1.08036 1.15838 0.78250 0.81458 0.84024 1.90912 1.60876 1.65617 1.30302 1.44749 1.71140 1.11311 1.11017 1.20807 1.01467 0.92161 0.85838 1.19652 0.85018 0.86847 0.86093 1.90532 1.58923 1.75853 1.21162 1.42114 1.59283 1.12646 1.07281 1.19440 1.41796 0.84959 0.97763 0.86093 1.25059 0.96842 0.95331 0.98595 1.69612 1.42909 1.05748 1.33015 0.86674 0.79150 0.79170 0.84525 1.19380 1.19965 1.19194 0.90206 0.89109 0.90693 0.81398 0.80928 0.88763 0.88684 0.90565 0.90571 0.90675 0.90610 0.91564 0.91619 0.76884 0.75458 0.89871 0.89887 0.79210 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.04 36.00 0.36 -0.01 16 2 C 0.20 1.74 7.90 -155.41 -1.23 0.51 16 3 N -0.49 -5.40 11.25 -10.82 -0.12 -5.52 16 4 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 5 C -0.06 -0.41 11.58 -16.56 -0.19 -0.61 16 6 N -0.46 -3.09 2.75 -113.91 -0.31 -3.41 16 7 C 0.10 0.38 5.67 -4.04 -0.02 0.36 16 8 C -0.13 -0.54 5.54 -26.73 -0.15 -0.69 16 9 C -0.13 -0.53 5.33 -26.73 -0.14 -0.67 16 10 C 0.14 1.14 5.67 -4.04 -0.02 1.12 16 11 N -0.75 -7.55 5.56 -65.22 -0.36 -7.92 16 12 C 0.70 10.44 8.57 -86.92 -0.74 9.70 16 13 O -0.60 -10.97 16.34 5.29 0.09 -10.88 16 14 N -0.72 -11.17 5.53 -66.42 -0.37 -11.53 16 15 C 0.13 2.15 6.15 -5.20 -0.03 2.11 16 16 C 0.44 9.44 7.85 -10.99 -0.09 9.35 16 17 O -0.58 -14.32 15.24 5.54 0.08 -14.24 16 18 N -0.58 -13.19 5.09 -10.96 -0.06 -13.24 16 19 C -0.31 -8.47 10.16 -14.93 -0.15 -8.62 16 20 H 0.12 3.75 7.39 -52.49 -0.39 3.36 16 21 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 22 N -0.87 -24.70 13.96 55.50 0.77 -23.92 16 23 Si 0.88 18.79 27.74 -169.99 -4.71 14.07 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.27 7.34 -51.93 -0.38 -0.11 16 30 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.09 0.24 7.94 -51.93 -0.41 -0.18 16 33 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.36 7.64 -51.93 -0.40 -0.04 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.40 2.99 8.49 -40.82 -0.35 2.64 16 41 H 0.41 6.07 7.45 -40.82 -0.30 5.76 16 42 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.37 7.58 5.76 -40.82 -0.24 7.34 16 45 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 383.87 15.07 5.78 5.78 Total: -1.00 -36.35 383.87 -8.63 -44.98 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -6.70 Total: 12.61 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: -2.72 Total: 13.21 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -0.45 Total: -65.54 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: 0.17 Total: -25.12 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -4.71 Total: 14.07 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.35 -8.63 -44.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323069250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.378 kcal (2) G-P(sol) polarization free energy of solvation -36.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds