Wall clock time and date at job start Fri Apr 10 2020 18:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46844 * 2 1 4 4 C 1.52997 * 109.47022 * 120.00111 * 2 1 3 5 5 N 1.46899 * 109.47045 * 175.00057 * 4 2 1 6 6 C 1.46900 * 111.00135 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47375 * 179.97438 * 6 5 4 8 8 O 1.21291 * 119.99570 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00261 * 180.02562 * 7 6 5 10 10 C 1.37095 * 120.00144 * 179.97438 * 9 7 6 11 11 H 1.08001 * 120.00216 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99997 * 179.97438 * 10 9 7 13 13 N 1.31407 * 120.00155 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99829 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46725 * 90.00331 * 14 12 10 16 16 H 1.48502 * 109.46854 * 209.99850 * 14 12 10 17 17 H 1.48496 * 109.47237 * 330.00246 * 14 12 10 18 18 N 1.46500 * 109.46967 * 239.99989 * 2 1 3 19 19 C 1.46498 * 120.00387 * 299.99929 * 18 2 1 20 20 C 1.34781 * 119.99790 * 120.00102 * 18 2 1 21 21 O 1.21281 * 119.99862 * 0.02562 * 20 18 2 22 22 C 1.50701 * 120.00034 * 179.97438 * 20 18 2 23 23 N 1.46502 * 109.47241 * 180.02562 * 22 20 18 24 24 C 1.34948 * 126.03993 * 124.99420 * 23 22 20 25 25 C 1.35315 * 107.74520 * 179.97438 * 24 23 22 26 26 C 1.39870 * 107.92205 * 0.02562 * 25 24 23 27 27 N 1.30839 * 108.19862 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46762 * 60.00243 * 1 2 3 29 29 H 1.09000 * 109.46942 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47114 * 299.99850 * 1 2 3 31 31 H 1.08994 * 109.47472 * 295.00222 * 4 2 1 32 32 H 1.09001 * 109.47487 * 55.00332 * 4 2 1 33 33 H 1.00906 * 111.00066 * 303.95499 * 5 4 2 34 34 H 1.08997 * 109.47721 * 300.00197 * 6 5 4 35 35 H 1.09004 * 109.46913 * 59.99947 * 6 5 4 36 36 H 0.97004 * 119.99917 * 359.97438 * 9 7 6 37 37 H 0.96996 * 120.00664 * 179.97438 * 13 12 10 38 38 H 1.09005 * 109.47091 * 270.00420 * 19 18 2 39 39 H 1.08997 * 109.46930 * 30.00104 * 19 18 2 40 40 H 1.09003 * 109.47142 * 150.00029 * 19 18 2 41 41 H 1.08994 * 109.47031 * 59.99996 * 22 20 18 42 42 H 1.09001 * 109.47021 * 299.99528 * 22 20 18 43 43 H 1.08007 * 126.12251 * 0.27272 * 24 23 22 44 44 H 1.08001 * 126.03475 * 179.97438 * 25 24 23 45 45 H 1.07997 * 125.89701 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5040 -0.8267 1.1904 6 6 4.0304 -1.5149 2.3767 7 6 5.5317 -1.6045 2.2807 8 8 6.1065 -1.1410 1.3184 9 7 6.2354 -2.2004 3.2635 10 6 7.6011 -2.2824 3.1759 11 1 8.1131 -1.8690 2.3195 12 6 8.3267 -2.8963 4.1895 13 7 7.7039 -3.3988 5.2318 14 14 10.1877 -3.0073 4.0704 15 1 10.7963 -1.8082 4.7004 16 1 10.6567 -4.2280 4.7741 17 1 10.5892 -3.0740 2.6423 18 7 2.0183 -0.6906 -1.1962 19 6 1.6645 -2.0932 -1.4281 20 6 2.7932 -0.0356 -2.0834 21 8 3.0866 1.1254 -1.8911 22 6 3.2960 -0.7461 -3.3136 23 7 4.1103 0.1746 -4.1108 24 6 5.3798 -0.0366 -4.5169 25 6 5.7713 1.0470 -5.2266 26 6 4.7049 1.9516 -5.2546 27 7 3.7086 1.4295 -4.5862 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.7516 -0.1584 2.1369 32 1 1.6054 -1.7198 1.2951 33 1 3.7996 -1.2884 0.3432 34 1 3.7559 -0.9572 3.2720 35 1 3.6096 -2.5189 2.4308 36 1 5.7757 -2.5713 4.0329 37 1 8.2103 -3.8277 5.9392 38 1 2.4158 -2.7377 -0.9717 39 1 0.6905 -2.3002 -0.9847 40 1 1.6238 -2.2852 -2.5003 41 1 2.4485 -1.0890 -3.9069 42 1 3.9018 -1.6022 -3.0166 43 1 5.9748 -0.9153 -4.3160 44 1 6.7371 1.1887 -5.6889 45 1 4.7037 2.9142 -5.7441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666854468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:12 Heat of formation + Delta-G solvation = -3.028075 kcal Electronic energy + Delta-G solvation = -27438.663130 eV Core-core repulsion = 23492.596981 eV Total energy + Delta-G solvation = -3946.066150 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.12360 -40.97900 -40.13340 -38.03614 -36.17398 -35.55843 -34.40404 -33.29811 -32.63034 -30.95712 -29.00848 -28.42270 -27.79062 -26.68401 -24.66011 -23.20429 -21.99190 -21.60507 -21.10159 -20.06657 -19.88413 -18.59026 -18.21244 -17.82023 -17.19291 -17.04093 -16.67301 -16.38719 -16.00845 -15.68027 -15.33179 -15.31083 -15.03846 -14.54197 -14.49137 -14.28175 -14.13790 -14.00184 -13.64580 -13.54259 -13.31707 -13.26567 -13.12118 -13.00724 -12.95946 -12.79372 -12.50368 -12.42523 -12.12726 -11.87749 -11.57914 -11.53582 -11.08860 -10.40192 -10.28099 -10.04080 -9.71339 -9.50123 -9.29982 -8.48866 -5.97762 0.94015 1.36433 1.40623 1.51404 1.53134 1.55738 1.99722 2.02270 2.02627 2.27557 2.88161 3.18317 3.34197 3.49612 3.71881 3.91502 4.00961 4.04847 4.17108 4.21331 4.23986 4.28976 4.32712 4.45113 4.53675 4.63112 4.66020 4.68736 4.71337 4.78969 4.90133 4.92909 5.09359 5.16010 5.26766 5.38675 5.55843 5.75433 5.86997 6.06250 6.09116 6.31373 6.38228 6.58017 6.79104 7.10482 7.14018 7.53440 8.09359 8.68482 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011063 B = 0.003180 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.265368 B = 8803.483328 C =10831.121501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.139 3.861 3 H 0.066 0.934 4 C 0.055 3.945 5 N -0.688 5.688 6 C 0.067 3.933 7 C 0.435 3.565 8 O -0.626 6.626 9 N -0.571 5.571 10 C -0.335 4.335 11 H 0.076 0.924 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.992 3.008 15 H -0.273 1.273 16 H -0.268 1.268 17 H -0.272 1.272 18 N -0.606 5.606 19 C 0.059 3.941 20 C 0.495 3.505 21 O -0.563 6.563 22 C 0.115 3.885 23 N -0.373 5.373 24 C 0.048 3.952 25 C -0.284 4.284 26 C 0.028 3.972 27 N -0.319 5.319 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.340 0.660 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.143 0.857 42 H 0.152 0.848 43 H 0.203 0.797 44 H 0.168 0.832 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.039 -2.192 -14.826 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.035 3.965 3 H 0.084 0.916 4 C -0.075 4.075 5 N -0.321 5.321 6 C -0.066 4.066 7 C 0.223 3.777 8 O -0.513 6.513 9 N -0.208 5.208 10 C -0.465 4.465 11 H 0.094 0.906 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.199 1.199 16 H -0.192 1.192 17 H -0.197 1.197 18 N -0.340 5.340 19 C -0.082 4.082 20 C 0.282 3.718 21 O -0.440 6.440 22 C -0.010 4.010 23 N -0.156 5.156 24 C -0.097 4.097 25 C -0.313 4.313 26 C -0.159 4.159 27 N -0.140 5.140 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.159 0.841 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.231 0.769 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.161 0.839 42 H 0.170 0.830 43 H 0.220 0.780 44 H 0.186 0.814 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -16.629 -0.707 -14.428 22.027 hybrid contribution 1.541 -0.957 0.258 1.833 sum -15.088 -1.664 -14.170 20.765 Atomic orbital electron populations 1.22013 0.91653 1.03870 1.02988 1.21102 0.95426 0.96801 0.83191 0.91596 1.22415 0.86155 1.00493 0.98397 1.59943 1.10624 1.57560 1.03941 1.21536 0.90278 0.99019 0.95740 1.20925 0.90714 0.82192 0.83888 1.90504 1.72872 1.52814 1.35091 1.41914 1.06856 1.51516 1.20526 1.19642 0.83099 1.36977 1.06754 0.90584 1.26019 1.04867 0.95731 0.94446 1.69658 1.38308 1.38407 1.09606 0.84949 0.76867 0.78214 0.78445 1.19897 1.19232 1.19697 1.47918 1.50268 1.13776 1.22026 1.22204 1.02807 0.78964 1.04223 1.21081 0.78539 0.87039 0.85183 1.90769 1.57761 1.19041 1.76448 1.21849 0.98525 0.90648 0.89930 1.48314 1.11480 1.14386 1.41458 1.23191 0.86149 1.02300 0.98053 1.21861 1.02558 0.95605 1.11293 1.24399 0.91717 1.01353 0.98409 1.77343 1.25666 0.94322 1.16634 0.92713 0.89750 0.90111 0.89241 0.92254 0.84134 0.87998 0.90955 0.76902 0.91215 0.92237 0.88259 0.88290 0.83938 0.83002 0.78040 0.81419 0.78095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.17 71.98 0.66 -1.40 16 2 C 0.14 3.04 2.95 44.99 0.13 3.18 16 3 H 0.07 2.06 6.90 -2.39 -0.02 2.05 16 4 C 0.05 1.20 5.03 86.30 0.43 1.64 16 5 N -0.69 -22.42 6.12 -517.94 -3.17 -25.59 16 6 C 0.07 2.27 6.17 85.56 0.53 2.80 16 7 C 0.44 21.02 7.82 87.66 0.69 21.70 16 8 O -0.63 -35.83 15.78 -3.06 -0.05 -35.88 16 9 N -0.57 -29.41 5.29 -306.99 -1.62 -31.03 16 10 C -0.34 -19.18 9.68 84.04 0.81 -18.37 16 11 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 12 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 13 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 14 Si 0.99 42.96 29.55 68.60 2.03 44.98 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 18 N -0.61 -12.26 1.83 -822.59 -1.51 -13.77 16 19 C 0.06 0.60 9.38 127.77 1.20 1.80 16 20 C 0.49 13.62 7.70 87.66 0.68 14.29 16 21 O -0.56 -22.54 15.04 -3.03 -0.05 -22.58 16 22 C 0.11 2.24 5.54 85.63 0.47 2.72 16 23 N -0.37 -9.98 3.40 -351.79 -1.20 -11.18 16 24 C 0.05 1.12 11.45 83.54 0.96 2.08 16 25 C -0.28 -6.65 10.80 21.99 0.24 -6.41 16 26 C 0.03 0.72 12.03 85.24 1.03 1.75 16 27 N -0.32 -10.08 11.64 -57.02 -0.66 -10.75 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 0.76 6.66 -2.39 -0.02 0.75 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 0.97 7.84 -2.39 -0.02 0.96 16 33 H 0.34 11.64 7.55 -89.69 -0.68 10.96 16 34 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.40 19.25 7.90 -92.71 -0.73 18.51 16 37 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 38 H 0.06 0.65 8.13 -2.38 -0.02 0.63 16 39 H 0.10 0.61 6.43 -2.39 -0.02 0.59 16 40 H 0.10 0.46 6.44 -2.39 -0.02 0.45 16 41 H 0.14 1.75 7.40 -2.39 -0.02 1.73 16 42 H 0.15 2.02 8.04 -2.39 -0.02 2.00 16 43 H 0.20 3.24 8.06 -2.91 -0.02 3.22 16 44 H 0.17 2.99 8.06 -2.91 -0.02 2.96 16 45 H 0.20 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -87.96 379.87 1.96 -86.00 By element: Atomic # 1 Polarization: 43.57 SS G_CDS: -0.39 Total: 43.18 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: 8.29 Total: 25.66 kcal Atomic # 7 Polarization: -133.49 SS G_CDS: -7.88 Total: -141.37 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: -0.09 Total: -58.46 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -87.96 1.96 -86.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666854468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.971 kcal (2) G-P(sol) polarization free energy of solvation -87.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds