Wall clock time and date at job start Fri Apr 10 2020 18:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46726 * 2 1 4 4 C 1.34259 * 125.75336 * 125.00203 * 3 2 1 5 5 C 1.38045 * 107.41939 * 179.97438 * 4 3 2 6 6 C 1.47428 * 126.41432 * 180.02562 * 5 4 3 7 7 O 1.21602 * 120.00252 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99946 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99997 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47072 * 324.98798 * 9 8 6 11 11 C 1.52998 * 109.47728 * 84.99473 * 9 8 6 12 12 C 1.53003 * 109.46928 * 204.99513 * 9 8 6 13 13 N 1.46900 * 109.47118 * 54.99639 * 12 9 8 14 14 C 1.46908 * 111.00007 * 179.97438 * 13 12 9 15 15 C 1.50697 * 109.47117 * 179.97438 * 14 13 12 16 16 O 1.21296 * 119.99945 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00125 * 180.02562 * 15 14 13 18 18 C 1.37093 * 120.00494 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99774 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00300 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00051 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00033 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47137 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46925 * 119.99768 * 22 20 18 25 25 H 1.48500 * 109.47058 * 239.99921 * 22 20 18 26 26 C 1.41290 * 107.17003 * 359.97438 * 5 4 3 27 27 N 1.30448 * 108.01917 * 0.02562 * 26 5 4 28 28 H 1.09001 * 109.47115 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47736 * 299.99675 * 1 2 3 30 30 H 1.09000 * 109.47469 * 60.00346 * 1 2 3 31 31 H 1.09003 * 109.47179 * 239.99962 * 2 1 3 32 32 H 1.08999 * 109.46628 * 120.00021 * 2 1 3 33 33 H 1.08005 * 126.28789 * 0.24258 * 4 3 2 34 34 H 0.97000 * 120.00137 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.46659 * 59.99473 * 11 9 8 36 36 H 1.08993 * 109.47117 * 179.97438 * 11 9 8 37 37 H 1.09001 * 109.46841 * 299.99982 * 11 9 8 38 38 H 1.08997 * 109.47069 * 174.99810 * 12 9 8 39 39 H 1.09000 * 109.46905 * 294.99661 * 12 9 8 40 40 H 1.00899 * 111.00306 * 303.95150 * 13 12 9 41 41 H 1.09003 * 109.47074 * 300.00465 * 14 13 12 42 42 H 1.09007 * 109.46806 * 60.00074 * 14 13 12 43 43 H 0.97003 * 120.00057 * 359.97438 * 17 15 14 44 44 H 0.97004 * 119.99799 * 180.02562 * 21 20 18 45 45 H 1.07999 * 125.99006 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8689 1.9125 0.8925 5 6 3.0713 3.2308 0.5365 6 6 3.9333 4.2031 1.2331 7 8 4.5508 3.8668 2.2251 8 7 4.0360 5.4649 0.7709 9 6 4.8930 6.4309 1.4627 10 1 4.8607 6.2420 2.5357 11 6 6.3317 6.2865 0.9625 12 6 4.3945 7.8494 1.1795 13 7 2.9768 7.9534 1.5500 14 6 2.4629 9.3052 1.2917 15 6 1.0091 9.3730 1.6825 16 8 0.4556 8.3920 2.1324 17 7 0.3239 10.5238 1.5321 18 6 -0.9986 10.5858 1.8881 19 1 -1.4914 9.7123 2.2887 20 6 -1.7051 11.7720 1.7326 21 7 -1.1056 12.8348 1.2447 22 14 -3.5073 11.8562 2.2170 23 1 -3.9428 10.5345 2.7354 24 1 -3.6889 12.8862 3.2713 25 1 -4.3230 12.2146 1.0290 26 6 2.2985 3.4736 -0.6212 27 7 1.6774 2.3690 -0.9307 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3165 1.4012 1.7320 34 1 3.5431 5.7333 -0.0203 35 1 6.3638 6.4754 -0.1105 36 1 6.9691 7.0055 1.4769 37 1 6.6868 5.2759 1.1643 38 1 4.9760 8.5624 1.7640 39 1 4.5099 8.0699 0.1182 40 1 2.4255 7.2586 1.0690 41 1 3.0312 10.0279 1.8773 42 1 2.5649 9.5362 0.2313 43 1 0.7666 11.3085 1.1727 44 1 -1.5988 13.6630 1.1365 45 1 2.2328 4.4097 -1.1556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669528259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:39 Heat of formation + Delta-G solvation = 0.883132 kcal Electronic energy + Delta-G solvation = -26531.171511 eV Core-core repulsion = 22585.274964 eV Total energy + Delta-G solvation = -3945.896547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.56116 -39.45375 -38.25311 -36.58287 -34.84654 -34.20587 -33.58069 -31.41342 -31.15800 -30.76362 -29.41000 -27.56436 -25.05624 -24.44261 -23.44965 -23.02195 -21.13326 -20.72932 -20.14104 -19.23868 -18.18856 -17.83917 -16.48773 -16.28640 -15.92811 -15.82100 -15.31354 -15.01869 -14.67844 -14.50575 -14.37453 -14.12161 -13.96122 -13.82206 -13.48992 -13.07461 -12.97919 -12.81168 -12.59790 -12.51865 -12.36497 -11.91568 -11.86963 -11.68109 -11.59005 -11.44781 -11.14534 -11.06151 -10.92470 -10.33237 -10.21243 -9.82484 -9.81691 -9.50749 -9.13850 -8.79539 -8.44301 -8.05434 -7.94530 -6.40734 -3.81311 1.38069 2.03612 2.07445 3.17301 3.23814 3.27834 3.35395 3.48760 3.92155 4.05068 4.10281 4.31275 4.48680 4.52601 4.63076 4.74165 4.85811 5.00352 5.05169 5.12905 5.22005 5.22842 5.25271 5.31285 5.39729 5.47661 5.53696 5.62112 5.68014 5.72868 5.79581 5.97413 6.02391 6.13824 6.21471 6.28121 6.54101 6.58011 7.18935 7.31776 7.55979 7.56703 7.64467 8.07926 8.32705 8.62681 9.19443 9.55717 10.07333 10.77132 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010704 B = 0.002693 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.271483 B =10394.578876 C =12569.504731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.127 3.873 3 N -0.362 5.362 4 C 0.127 3.873 5 C -0.292 4.292 6 C 0.602 3.398 7 O -0.552 6.552 8 N -0.719 5.719 9 C 0.147 3.853 10 H 0.098 0.902 11 C -0.161 4.161 12 C 0.050 3.950 13 N -0.667 5.667 14 C 0.050 3.950 15 C 0.440 3.560 16 O -0.581 6.581 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.083 3.917 27 N -0.294 5.294 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.187 0.813 34 H 0.395 0.605 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.032 0.968 40 H 0.348 0.652 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.993 -19.787 -6.131 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.006 3.994 3 N -0.141 5.141 4 C -0.025 4.025 5 C -0.307 4.307 6 C 0.389 3.611 7 O -0.430 6.430 8 N -0.370 5.370 9 C 0.042 3.958 10 H 0.116 0.884 11 C -0.220 4.220 12 C -0.080 4.080 13 N -0.300 5.300 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.465 6.465 17 N -0.201 5.201 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.105 4.105 27 N -0.114 5.114 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.204 0.796 34 H 0.229 0.771 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.050 0.950 40 H 0.168 0.832 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 11.233 -21.091 -5.308 24.478 hybrid contribution -0.416 1.298 -0.814 1.588 sum 10.816 -19.794 -6.122 23.372 Atomic orbital electron populations 1.22071 0.93290 1.03102 1.04061 1.21823 0.96566 0.76861 1.04139 1.48649 1.34298 1.10633 1.20556 1.22970 0.91611 0.93671 0.94227 1.20262 1.11667 0.95413 1.03336 1.17140 0.79849 0.81234 0.82837 1.90753 1.47373 1.78789 1.26135 1.45749 1.48831 1.10719 1.31691 1.21012 0.88967 0.86922 0.98906 0.88371 1.22150 0.95895 1.02713 1.01219 1.22310 0.90874 0.96009 0.98780 1.60001 1.01472 1.04762 1.63788 1.21694 0.95903 0.91501 0.99164 1.19820 0.87701 0.84699 0.85228 1.90539 1.70276 1.36011 1.49686 1.41868 1.10929 1.10809 1.56522 1.19751 0.85569 0.98241 1.39162 0.87897 1.25257 1.00476 0.94950 0.97305 1.69622 1.37467 1.01809 1.45487 0.85808 0.81981 0.78509 0.78105 1.19215 1.20739 1.20786 1.24072 0.93867 0.97414 0.95121 1.77147 1.23499 0.97189 1.13538 0.90485 0.91736 0.90848 0.89356 0.88262 0.79620 0.77060 0.92600 0.91466 0.91889 0.89485 0.95006 0.83182 0.89470 0.93868 0.77475 0.91950 0.79453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.09 37.16 0.37 -0.65 16 2 C 0.13 0.73 7.21 -4.04 -0.03 0.70 16 3 N -0.36 -3.51 3.65 -60.81 -0.22 -3.73 16 4 C 0.13 1.30 11.25 -16.56 -0.19 1.11 16 5 C -0.29 -3.48 6.13 -105.07 -0.64 -4.12 16 6 C 0.60 8.14 7.78 -12.52 -0.10 8.04 16 7 O -0.55 -9.15 16.56 5.28 0.09 -9.07 16 8 N -0.72 -8.24 4.35 -54.88 -0.24 -8.48 16 9 C 0.15 1.69 2.88 -67.93 -0.20 1.50 16 10 H 0.10 1.39 7.58 -51.93 -0.39 1.00 16 11 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 12 C 0.05 0.58 5.30 -3.82 -0.02 0.56 16 13 N -0.67 -10.62 6.12 -115.05 -0.70 -11.32 16 14 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 15 C 0.44 10.42 7.82 -10.99 -0.09 10.33 16 16 O -0.58 -15.97 15.78 5.54 0.09 -15.88 16 17 N -0.56 -14.33 5.29 -10.97 -0.06 -14.39 16 18 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 19 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 22 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 C 0.08 0.92 11.50 -16.98 -0.20 0.72 16 27 N -0.29 -3.46 12.33 30.86 0.38 -3.08 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.32 8.06 -51.93 -0.42 -0.10 16 33 H 0.19 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.40 3.75 7.11 -40.82 -0.29 3.46 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.35 5.70 7.28 -39.29 -0.29 5.42 16 41 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.19 1.55 7.50 -52.49 -0.39 1.15 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -36.20 387.29 -6.82 -43.02 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -6.69 Total: 14.98 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: -1.00 Total: 9.85 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: -0.12 Total: -64.90 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: 0.17 Total: -24.95 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.20 -6.82 -43.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669528259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.901 kcal (2) G-P(sol) polarization free energy of solvation -36.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds