Wall clock time and date at job start Fri Apr 10 2020 18:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46726 * 2 1 4 4 C 1.34259 * 125.75336 * 125.00203 * 3 2 1 5 5 C 1.38045 * 107.41939 * 179.97438 * 4 3 2 6 6 C 1.47428 * 126.41432 * 180.02562 * 5 4 3 7 7 O 1.21602 * 120.00252 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99946 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99997 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47072 * 324.98798 * 9 8 6 11 11 C 1.52998 * 109.47728 * 84.99473 * 9 8 6 12 12 C 1.53003 * 109.46928 * 204.99513 * 9 8 6 13 13 N 1.46900 * 109.47118 * 54.99639 * 12 9 8 14 14 C 1.46908 * 111.00007 * 179.97438 * 13 12 9 15 15 C 1.50697 * 109.47117 * 179.97438 * 14 13 12 16 16 O 1.21296 * 119.99945 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00125 * 180.02562 * 15 14 13 18 18 C 1.37093 * 120.00494 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99774 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00300 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00051 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00033 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47137 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46925 * 119.99768 * 22 20 18 25 25 H 1.48500 * 109.47058 * 239.99921 * 22 20 18 26 26 C 1.41290 * 107.17003 * 359.97438 * 5 4 3 27 27 N 1.30448 * 108.01917 * 0.02562 * 26 5 4 28 28 H 1.09001 * 109.47115 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47736 * 299.99675 * 1 2 3 30 30 H 1.09000 * 109.47469 * 60.00346 * 1 2 3 31 31 H 1.09003 * 109.47179 * 239.99962 * 2 1 3 32 32 H 1.08999 * 109.46628 * 120.00021 * 2 1 3 33 33 H 1.08005 * 126.28789 * 0.24258 * 4 3 2 34 34 H 0.97000 * 120.00137 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.46659 * 59.99473 * 11 9 8 36 36 H 1.08993 * 109.47117 * 179.97438 * 11 9 8 37 37 H 1.09001 * 109.46841 * 299.99982 * 11 9 8 38 38 H 1.08997 * 109.47069 * 174.99810 * 12 9 8 39 39 H 1.09000 * 109.46905 * 294.99661 * 12 9 8 40 40 H 1.00899 * 111.00306 * 303.95150 * 13 12 9 41 41 H 1.09003 * 109.47074 * 300.00465 * 14 13 12 42 42 H 1.09007 * 109.46806 * 60.00074 * 14 13 12 43 43 H 0.97003 * 120.00057 * 359.97438 * 17 15 14 44 44 H 0.97004 * 119.99799 * 180.02562 * 21 20 18 45 45 H 1.07999 * 125.99006 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8689 1.9125 0.8925 5 6 3.0713 3.2308 0.5365 6 6 3.9333 4.2031 1.2331 7 8 4.5508 3.8668 2.2251 8 7 4.0360 5.4649 0.7709 9 6 4.8930 6.4309 1.4627 10 1 4.8607 6.2420 2.5357 11 6 6.3317 6.2865 0.9625 12 6 4.3945 7.8494 1.1795 13 7 2.9768 7.9534 1.5500 14 6 2.4629 9.3052 1.2917 15 6 1.0091 9.3730 1.6825 16 8 0.4556 8.3920 2.1324 17 7 0.3239 10.5238 1.5321 18 6 -0.9986 10.5858 1.8881 19 1 -1.4914 9.7123 2.2887 20 6 -1.7051 11.7720 1.7326 21 7 -1.1056 12.8348 1.2447 22 14 -3.5073 11.8562 2.2170 23 1 -3.9428 10.5345 2.7354 24 1 -3.6889 12.8862 3.2713 25 1 -4.3230 12.2146 1.0290 26 6 2.2985 3.4736 -0.6212 27 7 1.6774 2.3690 -0.9307 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3165 1.4012 1.7320 34 1 3.5431 5.7333 -0.0203 35 1 6.3638 6.4754 -0.1105 36 1 6.9691 7.0055 1.4769 37 1 6.6868 5.2759 1.1643 38 1 4.9760 8.5624 1.7640 39 1 4.5099 8.0699 0.1182 40 1 2.4255 7.2586 1.0690 41 1 3.0312 10.0279 1.8773 42 1 2.5649 9.5362 0.2313 43 1 0.7666 11.3085 1.1727 44 1 -1.5988 13.6630 1.1365 45 1 2.2328 4.4097 -1.1556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669528259.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:38 Heat of formation + Delta-G solvation = -27.828640 kcal Electronic energy + Delta-G solvation = -26532.416547 eV Core-core repulsion = 22585.274964 eV Total energy + Delta-G solvation = -3947.141583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.36734 -40.50034 -40.03976 -37.74738 -36.01280 -35.48758 -34.98680 -33.24978 -32.31285 -31.52259 -30.18479 -28.94189 -26.69553 -25.20310 -24.59979 -24.02592 -21.98279 -21.55554 -21.11136 -20.99195 -19.90498 -19.00879 -17.85259 -17.32317 -17.00146 -16.71160 -16.61520 -16.35113 -16.07608 -15.78543 -15.45369 -15.29750 -15.11583 -14.99314 -14.66732 -14.30216 -14.03777 -13.76991 -13.54808 -13.39834 -13.27720 -13.07149 -12.99688 -12.99104 -12.77489 -12.64697 -12.44863 -12.39575 -12.12022 -11.91875 -11.86476 -11.50922 -10.86619 -10.59650 -10.35197 -10.10821 -10.00400 -9.62570 -9.28164 -8.46496 -5.94774 0.55248 1.16887 1.36412 1.40908 1.41715 1.55745 2.06802 2.28870 2.33558 2.52402 2.92737 3.21181 3.44926 3.54538 3.78577 3.90062 4.01430 4.06237 4.13639 4.25842 4.31546 4.33741 4.41019 4.42345 4.53320 4.62816 4.69816 4.73194 4.77672 4.80223 4.85343 4.87943 5.15408 5.20039 5.33394 5.41646 5.41779 5.61766 5.89224 5.89686 6.11669 6.41102 6.49351 6.61391 6.65442 7.13867 7.34537 7.57778 8.13713 8.71103 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010704 B = 0.002693 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.271483 B =10394.578876 C =12569.504731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.358 5.358 4 C 0.130 3.870 5 C -0.318 4.318 6 C 0.598 3.402 7 O -0.591 6.591 8 N -0.711 5.711 9 C 0.148 3.852 10 H 0.067 0.933 11 C -0.151 4.151 12 C 0.056 3.944 13 N -0.688 5.688 14 C 0.065 3.935 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.573 5.573 18 C -0.332 4.332 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.270 1.270 26 C 0.081 3.919 27 N -0.321 5.321 28 H 0.103 0.897 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.130 0.870 33 H 0.207 0.793 34 H 0.406 0.594 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.343 0.657 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.631 -19.796 -7.040 24.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.002 4.002 3 N -0.137 5.137 4 C -0.023 4.023 5 C -0.333 4.333 6 C 0.387 3.613 7 O -0.473 6.473 8 N -0.362 5.362 9 C 0.043 3.957 10 H 0.085 0.915 11 C -0.210 4.210 12 C -0.073 4.073 13 N -0.321 5.321 14 C -0.067 4.067 15 C 0.223 3.777 16 O -0.511 6.511 17 N -0.211 5.211 18 C -0.462 4.462 19 H 0.094 0.906 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.106 4.106 27 N -0.141 5.141 28 H 0.122 0.878 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.148 0.852 33 H 0.224 0.776 34 H 0.242 0.758 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.162 0.838 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 11.886 -21.073 -6.265 24.992 hybrid contribution -0.602 1.223 -0.527 1.461 sum 11.284 -19.850 -6.792 23.822 Atomic orbital electron populations 1.22040 0.93614 1.04269 1.02179 1.22243 0.96298 0.75240 1.06442 1.48990 1.33577 1.11475 1.19639 1.23348 0.91095 0.93428 0.94435 1.20309 1.12674 0.96032 1.04250 1.17408 0.79564 0.81909 0.82409 1.90720 1.49143 1.79569 1.27885 1.45710 1.48581 1.10162 1.31749 1.20983 0.90379 0.86981 0.97330 0.91504 1.22058 0.94280 1.02234 1.02403 1.22372 0.88190 0.96054 1.00644 1.59976 1.03558 1.03823 1.64775 1.21557 0.91157 0.92899 1.01065 1.20980 0.90087 0.83287 0.83296 1.90509 1.72030 1.37368 1.51239 1.41928 1.10400 1.11680 1.57050 1.19667 0.87255 0.98092 1.41180 0.90597 1.26004 1.04263 0.94229 0.96708 1.69672 1.38909 1.02145 1.45333 0.84903 0.77166 0.78172 0.78290 1.19994 1.19615 1.19467 1.24398 0.93238 0.98069 0.94890 1.77093 1.24342 0.97924 1.14789 0.87807 0.93309 0.92920 0.87852 0.85185 0.77599 0.75843 0.90849 0.89887 0.93498 0.88204 0.92185 0.83792 0.87562 0.90857 0.76876 0.91299 0.77606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.09 71.98 0.73 -1.12 16 2 C 0.12 1.16 7.21 86.38 0.62 1.78 16 3 N -0.36 -6.67 3.65 -346.30 -1.26 -7.94 16 4 C 0.13 2.60 11.25 84.28 0.95 3.55 16 5 C -0.32 -7.60 6.13 -20.15 -0.12 -7.72 16 6 C 0.60 16.42 7.78 86.66 0.67 17.09 16 7 O -0.59 -20.19 16.56 -4.04 -0.07 -20.26 16 8 N -0.71 -16.00 4.35 -445.81 -1.94 -17.94 16 9 C 0.15 3.28 2.88 44.99 0.13 3.41 16 10 H 0.07 1.93 7.58 -2.39 -0.02 1.91 16 11 C -0.15 -2.59 9.48 71.98 0.68 -1.91 16 12 C 0.06 1.17 5.30 86.30 0.46 1.62 16 13 N -0.69 -21.00 6.12 -517.90 -3.17 -24.16 16 14 C 0.07 2.14 6.17 85.55 0.53 2.67 16 15 C 0.44 20.68 7.82 87.66 0.69 21.37 16 16 O -0.62 -35.16 15.78 -3.08 -0.05 -35.21 16 17 N -0.57 -29.34 5.29 -306.99 -1.62 -30.96 16 18 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 21 N -0.92 -49.54 13.05 21.66 0.28 -49.25 16 22 Si 0.99 43.26 29.55 68.60 2.03 45.29 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 26 C 0.08 1.79 11.50 85.65 0.99 2.77 16 27 N -0.32 -7.51 12.33 -56.27 -0.69 -8.20 16 28 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.13 0.50 8.06 -2.39 -0.02 0.48 16 33 H 0.21 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.41 7.32 7.11 -92.71 -0.66 6.66 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.34 11.01 7.28 -89.70 -0.65 10.35 16 41 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 42 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 44 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 45 H 0.21 3.31 7.50 -2.91 -0.02 3.29 16 Total: -1.00 -80.52 387.29 0.09 -80.43 By element: Atomic # 1 Polarization: 44.10 SS G_CDS: -1.01 Total: 43.09 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: 7.60 Total: 25.12 kcal Atomic # 7 Polarization: -130.05 SS G_CDS: -8.40 Total: -138.46 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: -0.12 Total: -55.46 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -80.52 0.09 -80.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669528259.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.597 kcal (2) G-P(sol) polarization free energy of solvation -80.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds