Wall clock time and date at job start Fri Apr 10 2020 18:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.52999 * 109.47070 * 90.00054 * 3 2 1 5 5 C 1.52994 * 109.47299 * 180.02562 * 4 3 2 6 6 N 1.46903 * 109.47180 * 180.02562 * 5 4 3 7 7 C 1.46904 * 111.00160 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47021 * 180.02562 * 7 6 5 9 9 O 1.21286 * 120.00434 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99776 * 180.02562 * 8 7 6 11 11 C 1.37094 * 120.00065 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00200 * 0.02562 * 11 10 8 13 13 C 1.38950 * 120.00134 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00143 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99847 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47302 * 89.99987 * 15 13 11 17 17 H 1.48504 * 109.46964 * 209.99804 * 15 13 11 18 18 H 1.48498 * 109.47320 * 330.00126 * 15 13 11 19 19 C 1.34777 * 119.99873 * 180.28195 * 2 1 3 20 20 O 1.21283 * 120.00222 * 179.97438 * 19 2 1 21 21 C 1.50699 * 119.99772 * 359.97438 * 19 2 1 22 22 N 1.46506 * 109.46888 * 180.02562 * 21 19 2 23 23 C 1.34947 * 126.03646 * 124.99985 * 22 21 19 24 24 C 1.35316 * 107.74617 * 179.97438 * 23 22 21 25 25 C 1.39870 * 107.91897 * 0.02562 * 24 23 22 26 26 N 1.30840 * 108.20490 * 359.74022 * 25 24 23 27 27 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 28 28 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 29 29 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 30 30 H 1.08993 * 109.47575 * 210.00600 * 3 2 1 31 31 H 1.09001 * 109.46870 * 330.00556 * 3 2 1 32 32 H 1.09002 * 109.47116 * 300.00653 * 4 3 2 33 33 H 1.09001 * 109.47317 * 59.99875 * 4 3 2 34 34 H 1.08997 * 109.47609 * 299.99860 * 5 4 3 35 35 H 1.09001 * 109.46807 * 60.00401 * 5 4 3 36 36 H 1.00898 * 110.99856 * 56.04817 * 6 5 4 37 37 H 1.08995 * 109.46904 * 300.00167 * 7 6 5 38 38 H 1.09003 * 109.46751 * 59.99894 * 7 6 5 39 39 H 0.97002 * 119.99842 * 0.02562 * 10 8 7 40 40 H 0.97002 * 120.00254 * 180.02562 * 14 13 11 41 41 H 1.08999 * 109.47685 * 300.00183 * 21 19 2 42 42 H 1.08997 * 109.47517 * 60.00530 * 21 19 2 43 43 H 1.07998 * 126.12735 * 359.95484 * 23 22 21 44 44 H 1.07992 * 126.04202 * 179.97438 * 24 23 22 45 45 H 1.08004 * 125.89725 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.2171 3.0356 1.4426 6 7 3.4625 3.4593 2.8276 7 6 4.1968 4.7310 2.8669 8 6 4.4300 5.1323 4.3006 9 8 4.0249 4.4281 5.2011 10 7 5.0888 6.2739 4.5822 11 6 5.3015 6.6388 5.8864 12 1 4.9414 6.0112 6.6883 13 6 5.9812 7.8154 6.1768 14 7 6.1845 8.1654 7.4270 15 14 6.6045 8.9004 4.7899 16 1 5.5571 9.8878 4.4248 17 1 7.8273 9.6170 5.2334 18 1 6.9248 8.0591 3.6088 19 6 2.1389 -1.1672 -0.0057 20 8 3.3517 -1.1673 -0.0062 21 6 1.3853 -2.4722 -0.0116 22 7 2.3374 -3.5858 -0.0166 23 6 2.3775 -4.6000 0.8728 24 6 3.3972 -5.4170 0.5209 25 6 4.0012 -4.8835 -0.6223 26 7 3.3634 -3.7886 -0.9484 27 1 -0.3633 -0.0050 1.0277 28 1 -0.3633 0.8925 -0.5094 29 1 -0.3633 -0.8875 -0.5181 30 1 3.1499 1.1384 -0.5139 31 1 1.6085 2.0284 -0.5138 32 1 1.5002 1.8406 1.9564 33 1 3.0417 0.9507 1.9564 34 1 4.1695 2.9058 0.9286 35 1 2.6276 3.7951 0.9289 36 1 3.9520 2.7434 3.3433 37 1 5.1557 4.6125 2.3625 38 1 3.6143 5.5026 2.3633 39 1 5.4125 6.8373 3.8619 40 1 6.6587 8.9870 7.6296 41 1 0.7590 -2.5342 0.8783 42 1 0.7584 -2.5259 -0.9016 43 1 1.7148 -4.7351 1.7147 44 1 3.6929 -6.3207 1.0329 45 1 4.8456 -5.3049 -1.1475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670017428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:50 Heat of formation + Delta-G solvation = 27.556975 kcal Electronic energy + Delta-G solvation = -25890.373208 eV Core-core repulsion = 21945.633326 eV Total energy + Delta-G solvation = -3944.739882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.50002 -40.10457 -38.48674 -36.71540 -35.56213 -33.97666 -33.74876 -31.97695 -31.59498 -30.34569 -28.40599 -27.66523 -26.60024 -24.75849 -23.25340 -21.81413 -21.42674 -21.28825 -19.60558 -19.35050 -18.31718 -17.85358 -17.55849 -16.49884 -16.25733 -15.93029 -15.76124 -15.03730 -14.97565 -14.65855 -14.40472 -14.22980 -13.97055 -13.75085 -13.55095 -13.46344 -13.19174 -13.09333 -12.92793 -12.80534 -12.63122 -12.33265 -12.15593 -11.85657 -11.72941 -11.45977 -11.16075 -10.90372 -10.84096 -10.58768 -10.40851 -9.96784 -9.62216 -9.56514 -9.12806 -8.88931 -8.58375 -8.18651 -8.12980 -6.30230 -3.81601 1.55512 2.02034 2.14808 2.58630 2.63722 3.03492 3.07586 3.15613 3.75222 3.82629 4.09099 4.11854 4.15362 4.39683 4.49003 4.56628 4.72898 4.76585 4.80753 4.91332 5.03941 5.14452 5.16520 5.21793 5.25386 5.26540 5.46348 5.47982 5.59471 5.64749 5.73223 5.82440 5.88411 5.93983 6.02833 6.17108 6.36034 6.60066 6.86917 7.11063 7.43846 7.57417 7.59736 7.71832 8.15424 8.60887 8.95867 9.43382 9.83877 10.82915 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021710 B = 0.001778 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.426515 B =15741.847797 C =16240.092556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.616 5.616 3 C 0.119 3.881 4 C -0.131 4.131 5 C 0.062 3.938 6 N -0.670 5.670 7 C 0.048 3.952 8 C 0.450 3.550 9 O -0.565 6.565 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.119 0.881 13 C 0.041 3.959 14 N -0.882 5.882 15 Si 0.880 3.120 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.499 3.501 20 O -0.504 6.504 21 C 0.118 3.882 22 N -0.366 5.366 23 C 0.052 3.948 24 C -0.270 4.270 25 C 0.040 3.960 26 N -0.269 5.269 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.351 0.649 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.371 0.629 40 H 0.273 0.727 41 H 0.125 0.875 42 H 0.113 0.887 43 H 0.174 0.826 44 H 0.148 0.852 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.084 -21.802 -20.823 32.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.351 5.351 3 C -0.004 4.004 4 C -0.170 4.170 5 C -0.068 4.068 6 N -0.302 5.302 7 C -0.085 4.085 8 C 0.236 3.764 9 O -0.447 6.447 10 N -0.230 5.230 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.522 5.522 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C 0.284 3.716 20 O -0.376 6.376 21 C -0.007 4.007 22 N -0.149 5.149 23 C -0.093 4.093 24 C -0.299 4.299 25 C -0.147 4.147 26 N -0.090 5.090 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.170 0.830 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.142 0.858 42 H 0.131 0.869 43 H 0.191 0.809 44 H 0.166 0.834 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -13.399 -20.738 -20.790 32.277 hybrid contribution 1.383 0.164 -0.523 1.487 sum -12.016 -20.574 -21.313 31.968 Atomic orbital electron populations 1.21924 0.79106 1.03551 1.02522 1.47823 1.07145 1.05945 1.74166 1.21500 0.97834 0.83600 0.97473 1.21876 1.01778 0.97011 0.96330 1.21853 0.98466 0.96135 0.90324 1.60077 1.52956 1.05269 1.11913 1.21706 0.96904 0.93372 0.96518 1.19721 0.83516 0.83320 0.89880 1.90560 1.53377 1.53190 1.47545 1.42208 1.51681 1.21014 1.08144 1.19436 1.34333 1.06853 0.82747 0.86294 1.25043 0.97492 0.97171 0.96510 1.69622 1.41132 1.24373 1.17033 0.86660 0.79570 0.81255 0.81827 1.19595 1.20180 1.19535 1.20525 0.88513 0.85110 0.77483 1.90816 1.13293 1.86554 1.46981 1.21513 0.89813 0.83477 1.05934 1.48104 1.25860 1.18880 1.22087 1.22555 1.00904 0.89776 0.96091 1.21516 1.01191 1.04973 1.02232 1.23944 1.00156 0.93411 0.97166 1.77489 1.00408 1.18004 1.13057 0.91844 0.90260 0.91161 0.89782 0.90087 0.90682 0.91617 0.95340 0.90998 0.82986 0.93742 0.89460 0.79678 0.91623 0.85757 0.86926 0.80893 0.83414 0.80043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.24 10.29 59.85 0.62 0.86 16 2 N -0.62 -4.67 2.87 -181.57 -0.52 -5.19 16 3 C 0.12 1.02 5.45 -4.04 -0.02 1.00 16 4 C -0.13 -1.38 5.80 -26.73 -0.16 -1.54 16 5 C 0.06 0.74 5.69 -3.83 -0.02 0.72 16 6 N -0.67 -10.79 6.13 -115.06 -0.71 -11.49 16 7 C 0.05 0.82 6.17 -4.98 -0.03 0.79 16 8 C 0.45 10.50 7.82 -10.99 -0.09 10.41 16 9 O -0.56 -15.56 15.78 5.55 0.09 -15.48 16 10 N -0.59 -14.37 5.09 -10.96 -0.06 -14.43 16 11 C -0.30 -8.77 10.16 -14.93 -0.15 -8.93 16 12 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16 13 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 14 N -0.88 -26.02 13.96 55.50 0.77 -25.25 16 15 Si 0.88 19.60 27.74 -169.99 -4.71 14.89 16 16 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.27 -5.49 6.52 56.52 0.37 -5.13 16 19 C 0.50 4.99 7.70 -10.99 -0.08 4.90 16 20 O -0.50 -7.64 15.29 5.55 0.08 -7.55 16 21 C 0.12 0.76 5.54 -5.19 -0.03 0.74 16 22 N -0.37 -3.57 3.40 -62.54 -0.21 -3.78 16 23 C 0.05 0.40 11.45 -17.22 -0.20 0.21 16 24 C -0.27 -2.25 10.80 -40.01 -0.43 -2.69 16 25 C 0.04 0.40 12.03 -17.36 -0.21 0.19 16 26 N -0.27 -3.34 11.66 30.63 0.36 -2.99 16 27 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.08 0.20 7.89 -51.93 -0.41 -0.21 16 29 H 0.07 0.08 6.44 -51.93 -0.33 -0.25 16 30 H 0.08 0.88 7.42 -51.93 -0.39 0.50 16 31 H 0.08 0.51 7.89 -51.93 -0.41 0.10 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.35 6.03 8.43 -39.29 -0.33 5.70 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.37 7.89 5.76 -40.82 -0.24 7.66 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.12 0.36 8.04 -51.93 -0.42 -0.06 16 42 H 0.11 0.46 7.40 -51.93 -0.38 0.08 16 43 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.18 1.27 8.06 -52.48 -0.42 0.84 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -39.81 383.16 -6.72 -46.53 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -6.69 Total: 11.26 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -0.90 Total: 7.70 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -0.36 Total: -63.13 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: 0.17 Total: -23.03 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.89 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.81 -6.72 -46.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670017428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.089 kcal (2) G-P(sol) polarization free energy of solvation -39.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds