Wall clock time and date at job start Fri Apr 10 2020 18:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00239 * 2 1 4 4 C 1.52999 * 109.47070 * 90.00054 * 3 2 1 5 5 C 1.52994 * 109.47299 * 180.02562 * 4 3 2 6 6 N 1.46903 * 109.47180 * 180.02562 * 5 4 3 7 7 C 1.46904 * 111.00160 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47021 * 180.02562 * 7 6 5 9 9 O 1.21286 * 120.00434 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99776 * 180.02562 * 8 7 6 11 11 C 1.37094 * 120.00065 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00200 * 0.02562 * 11 10 8 13 13 C 1.38950 * 120.00134 * 179.97438 * 11 10 8 14 14 N 1.31410 * 120.00143 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99847 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.47302 * 89.99987 * 15 13 11 17 17 H 1.48504 * 109.46964 * 209.99804 * 15 13 11 18 18 H 1.48498 * 109.47320 * 330.00126 * 15 13 11 19 19 C 1.34777 * 119.99873 * 180.28195 * 2 1 3 20 20 O 1.21283 * 120.00222 * 179.97438 * 19 2 1 21 21 C 1.50699 * 119.99772 * 359.97438 * 19 2 1 22 22 N 1.46506 * 109.46888 * 180.02562 * 21 19 2 23 23 C 1.34947 * 126.03646 * 124.99985 * 22 21 19 24 24 C 1.35316 * 107.74617 * 179.97438 * 23 22 21 25 25 C 1.39870 * 107.91897 * 0.02562 * 24 23 22 26 26 N 1.30840 * 108.20490 * 359.74022 * 25 24 23 27 27 H 1.08999 * 109.46892 * 269.72399 * 1 2 3 28 28 H 1.09000 * 109.46803 * 29.71572 * 1 2 3 29 29 H 1.09000 * 109.47214 * 149.72366 * 1 2 3 30 30 H 1.08993 * 109.47575 * 210.00600 * 3 2 1 31 31 H 1.09001 * 109.46870 * 330.00556 * 3 2 1 32 32 H 1.09002 * 109.47116 * 300.00653 * 4 3 2 33 33 H 1.09001 * 109.47317 * 59.99875 * 4 3 2 34 34 H 1.08997 * 109.47609 * 299.99860 * 5 4 3 35 35 H 1.09001 * 109.46807 * 60.00401 * 5 4 3 36 36 H 1.00898 * 110.99856 * 56.04817 * 6 5 4 37 37 H 1.08995 * 109.46904 * 300.00167 * 7 6 5 38 38 H 1.09003 * 109.46751 * 59.99894 * 7 6 5 39 39 H 0.97002 * 119.99842 * 0.02562 * 10 8 7 40 40 H 0.97002 * 120.00254 * 180.02562 * 14 13 11 41 41 H 1.08999 * 109.47685 * 300.00183 * 21 19 2 42 42 H 1.08997 * 109.47517 * 60.00530 * 21 19 2 43 43 H 1.07998 * 126.12735 * 359.95484 * 23 22 21 44 44 H 1.07992 * 126.04202 * 179.97438 * 24 23 22 45 45 H 1.08004 * 125.89725 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.2171 3.0356 1.4426 6 7 3.4625 3.4593 2.8276 7 6 4.1968 4.7310 2.8669 8 6 4.4300 5.1323 4.3006 9 8 4.0249 4.4281 5.2011 10 7 5.0888 6.2739 4.5822 11 6 5.3015 6.6388 5.8864 12 1 4.9414 6.0112 6.6883 13 6 5.9812 7.8154 6.1768 14 7 6.1845 8.1654 7.4270 15 14 6.6045 8.9004 4.7899 16 1 5.5571 9.8878 4.4248 17 1 7.8273 9.6170 5.2334 18 1 6.9248 8.0591 3.6088 19 6 2.1389 -1.1672 -0.0057 20 8 3.3517 -1.1673 -0.0062 21 6 1.3853 -2.4722 -0.0116 22 7 2.3374 -3.5858 -0.0166 23 6 2.3775 -4.6000 0.8728 24 6 3.3972 -5.4170 0.5209 25 6 4.0012 -4.8835 -0.6223 26 7 3.3634 -3.7886 -0.9484 27 1 -0.3633 -0.0050 1.0277 28 1 -0.3633 0.8925 -0.5094 29 1 -0.3633 -0.8875 -0.5181 30 1 3.1499 1.1384 -0.5139 31 1 1.6085 2.0284 -0.5138 32 1 1.5002 1.8406 1.9564 33 1 3.0417 0.9507 1.9564 34 1 4.1695 2.9058 0.9286 35 1 2.6276 3.7951 0.9289 36 1 3.9520 2.7434 3.3433 37 1 5.1557 4.6125 2.3625 38 1 3.6143 5.5026 2.3633 39 1 5.4125 6.8373 3.8619 40 1 6.6587 8.9870 7.6296 41 1 0.7590 -2.5342 0.8783 42 1 0.7584 -2.5259 -0.9016 43 1 1.7148 -4.7351 1.7147 44 1 3.6929 -6.3207 1.0329 45 1 4.8456 -5.3049 -1.1475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670017428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:48 Heat of formation + Delta-G solvation = -5.312037 kcal Electronic energy + Delta-G solvation = -25891.798515 eV Core-core repulsion = 21945.633326 eV Total energy + Delta-G solvation = -3946.165190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.12206 -40.79575 -40.33110 -37.70088 -36.55664 -35.92535 -34.44172 -33.78638 -32.84128 -30.98218 -29.36482 -28.34914 -27.57548 -26.14257 -24.54618 -22.70995 -22.10253 -21.91790 -21.31046 -20.31603 -20.17908 -18.46892 -18.16264 -17.84879 -17.21545 -16.94922 -16.80346 -16.69269 -15.89750 -15.70930 -15.54713 -15.29864 -14.99951 -14.85109 -14.55620 -14.34451 -14.22348 -14.16566 -13.98810 -13.65115 -13.42248 -13.35619 -13.18797 -13.02105 -12.84870 -12.71952 -12.44242 -12.39652 -11.99387 -11.71399 -11.57391 -11.53666 -11.16410 -10.49166 -10.30438 -10.27512 -9.74582 -9.50786 -9.40050 -8.43365 -6.04698 0.94629 1.29218 1.34443 1.43554 1.47008 1.51099 1.91892 1.98674 2.02320 2.21538 2.70816 3.12418 3.32282 3.39413 3.71116 3.94954 4.04107 4.06177 4.08653 4.13095 4.22802 4.28105 4.37320 4.39645 4.47742 4.52379 4.64956 4.69935 4.71954 4.77859 4.91028 4.98689 5.06376 5.15767 5.19930 5.48632 5.50506 5.73084 5.87532 6.01540 6.07734 6.27357 6.31040 6.57162 6.78602 6.85115 7.06643 7.36538 7.92936 8.74245 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021710 B = 0.001778 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.426515 B =15741.847797 C =16240.092556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.612 5.612 3 C 0.122 3.878 4 C -0.119 4.119 5 C 0.065 3.935 6 N -0.687 5.687 7 C 0.061 3.939 8 C 0.446 3.554 9 O -0.616 6.616 10 N -0.589 5.589 11 C -0.331 4.331 12 H 0.054 0.946 13 C -0.016 4.016 14 N -0.933 5.933 15 Si 0.967 3.033 16 H -0.255 1.255 17 H -0.275 1.275 18 H -0.233 1.233 19 C 0.489 3.511 20 O -0.569 6.569 21 C 0.115 3.885 22 N -0.376 5.376 23 C 0.053 3.947 24 C -0.286 4.286 25 C 0.025 3.975 26 N -0.324 5.324 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.034 0.966 34 H 0.032 0.968 35 H 0.096 0.904 36 H 0.339 0.661 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.390 0.610 40 H 0.280 0.720 41 H 0.165 0.835 42 H 0.139 0.861 43 H 0.213 0.787 44 H 0.168 0.832 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.696 -21.188 -23.867 35.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.345 5.345 3 C -0.001 4.001 4 C -0.158 4.158 5 C -0.064 4.064 6 N -0.319 5.319 7 C -0.071 4.071 8 C 0.234 3.766 9 O -0.501 6.501 10 N -0.231 5.231 11 C -0.460 4.460 12 H 0.073 0.927 13 C -0.214 4.214 14 N -0.574 5.574 15 Si 0.786 3.214 16 H -0.179 1.179 17 H -0.200 1.200 18 H -0.156 1.156 19 C 0.277 3.723 20 O -0.446 6.446 21 C -0.009 4.009 22 N -0.159 5.159 23 C -0.092 4.092 24 C -0.315 4.315 25 C -0.161 4.161 26 N -0.145 5.145 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.114 0.886 36 H 0.157 0.843 37 H 0.091 0.909 38 H 0.138 0.862 39 H 0.226 0.774 40 H 0.089 0.911 41 H 0.183 0.817 42 H 0.157 0.843 43 H 0.230 0.770 44 H 0.185 0.815 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -15.071 -20.125 -23.874 34.671 hybrid contribution 1.781 -0.103 0.544 1.865 sum -13.290 -20.227 -23.330 33.616 Atomic orbital electron populations 1.22257 0.76148 1.05667 1.03742 1.47957 1.08913 1.04941 1.72651 1.21420 0.97790 0.84988 0.95944 1.21746 1.01009 0.95605 0.97416 1.21953 0.99197 0.97226 0.88010 1.60129 1.52690 1.04718 1.14389 1.21651 0.99181 0.94643 0.91615 1.21003 0.81245 0.81973 0.92339 1.90537 1.54878 1.54551 1.50107 1.42026 1.52322 1.21918 1.06851 1.19015 1.36169 1.07257 0.83606 0.92748 1.26147 0.96746 0.98367 1.00165 1.69804 1.41900 1.25365 1.20292 0.85340 0.78900 0.78810 0.78305 1.17880 1.19961 1.15620 1.21233 0.88051 0.86758 0.76307 1.90785 1.16112 1.87558 1.50188 1.21885 0.89176 0.80722 1.09082 1.48372 1.25747 1.19861 1.21903 1.23253 1.00919 0.88747 0.96241 1.21887 1.01520 1.06043 1.02067 1.24384 1.00565 0.93144 0.97996 1.77391 1.02347 1.19425 1.15341 0.90988 0.88892 0.88473 0.92149 0.86960 0.90463 0.94670 0.94971 0.88573 0.84331 0.90949 0.86177 0.77396 0.91075 0.81743 0.84300 0.77036 0.81468 0.78629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.21 10.29 127.77 1.31 1.52 16 2 N -0.61 -8.16 2.87 -846.76 -2.43 -10.59 16 3 C 0.12 1.91 5.45 86.38 0.47 2.38 16 4 C -0.12 -2.38 5.80 30.59 0.18 -2.20 16 5 C 0.07 1.41 5.69 86.30 0.49 1.90 16 6 N -0.69 -21.25 6.13 -517.94 -3.17 -24.43 16 7 C 0.06 1.94 6.17 85.55 0.53 2.47 16 8 C 0.45 20.79 7.82 87.65 0.69 21.48 16 9 O -0.62 -35.28 15.78 -3.05 -0.05 -35.33 16 10 N -0.59 -28.42 5.09 -306.99 -1.56 -29.98 16 11 C -0.33 -19.77 10.16 84.04 0.85 -18.92 16 12 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 13 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 14 N -0.93 -56.81 13.96 21.66 0.30 -56.51 16 15 Si 0.97 39.15 27.74 68.60 1.90 41.06 16 16 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 18 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 19 C 0.49 9.45 7.70 87.66 0.68 10.13 16 20 O -0.57 -17.96 15.29 -3.04 -0.05 -18.00 16 21 C 0.12 1.25 5.54 85.63 0.47 1.72 16 22 N -0.38 -6.97 3.40 -351.79 -1.19 -8.17 16 23 C 0.05 0.75 11.45 83.54 0.96 1.70 16 24 C -0.29 -4.59 10.80 21.99 0.24 -4.35 16 25 C 0.03 0.52 12.03 85.24 1.02 1.54 16 26 N -0.32 -8.25 11.66 -57.02 -0.66 -8.92 16 27 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.09 0.10 7.89 -2.39 -0.02 0.08 16 29 H 0.10 -0.19 6.44 -2.39 -0.02 -0.20 16 30 H 0.06 1.26 7.42 -2.39 -0.02 1.24 16 31 H 0.11 1.05 7.89 -2.39 -0.02 1.03 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.34 11.76 8.43 -89.70 -0.76 11.00 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.39 15.50 5.76 -92.71 -0.53 14.96 16 40 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.17 0.33 8.04 -2.39 -0.02 0.31 16 42 H 0.14 0.72 7.40 -2.39 -0.02 0.70 16 43 H 0.21 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 45 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -96.47 383.16 1.10 -95.36 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -0.33 Total: 36.54 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 8.36 Total: 18.95 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -8.73 Total: -138.58 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -0.09 Total: -53.33 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.90 Total: 41.06 kcal Total: -96.47 1.10 -95.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670017428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.051 kcal (2) G-P(sol) polarization free energy of solvation -96.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds