Wall clock time and date at job start Fri Apr 10 2020 18:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46947 * 2 1 4 4 N 1.28716 * 126.03759 * 265.24491 * 3 2 1 5 5 N 1.28508 * 110.63823 * 180.28135 * 4 3 2 6 6 C 1.33323 * 109.43775 * 359.71749 * 5 4 3 7 7 C 1.37002 * 106.37263 * 0.02562 * 6 5 4 8 8 C 1.47238 * 127.18824 * 180.02562 * 7 6 5 9 9 O 1.21620 * 119.99935 * 354.06205 * 8 7 6 10 10 N 1.34774 * 120.00127 * 174.34425 * 8 7 6 11 11 C 1.46499 * 120.00285 * 175.46726 * 10 8 7 12 12 C 1.53007 * 109.49492 * 59.14512 * 11 10 8 13 13 O 1.42903 * 109.47132 * 54.44942 * 12 11 10 14 14 C 1.53041 * 109.49661 * 299.08258 * 11 10 8 15 15 C 1.53030 * 109.53742 * 301.40792 * 14 11 10 16 16 C 1.53191 * 109.31594 * 298.63921 * 15 14 11 17 17 N 1.46917 * 108.77617 * 54.63262 * 16 15 14 18 18 C 1.36939 * 120.63058 * 126.39008 * 17 16 15 19 19 H 1.08002 * 120.00033 * 328.48539 * 18 17 16 20 20 C 1.38822 * 120.00031 * 148.47884 * 18 17 16 21 21 N 1.31616 * 119.99956 * 348.88198 * 20 18 17 22 22 Si 1.86802 * 120.00041 * 168.88060 * 20 18 17 23 23 H 1.48501 * 109.46918 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46900 * 120.00067 * 22 20 18 25 25 H 1.48495 * 109.46985 * 240.00308 * 22 20 18 26 26 C 1.46930 * 118.74197 * 306.39377 * 17 16 15 27 27 H 1.09001 * 109.46824 * 299.99557 * 1 2 3 28 28 H 1.08996 * 109.47011 * 59.99523 * 1 2 3 29 29 H 1.09004 * 109.46998 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46647 * 239.99939 * 2 1 3 31 31 H 1.08996 * 109.47011 * 120.00477 * 2 1 3 32 32 H 1.08004 * 126.81087 * 180.02562 * 6 5 4 33 33 H 0.96999 * 119.99736 * 355.46526 * 10 8 7 34 34 H 1.08994 * 109.47101 * 174.44890 * 12 11 10 35 35 H 1.09001 * 109.47136 * 294.44863 * 12 11 10 36 36 H 0.96695 * 114.00416 * 179.97438 * 13 12 11 37 37 H 1.08996 * 109.45849 * 61.43368 * 14 11 10 38 38 H 1.09001 * 109.45690 * 181.38883 * 14 11 10 39 39 H 1.09004 * 109.49719 * 58.59361 * 15 14 11 40 40 H 1.09007 * 109.49951 * 178.68555 * 15 14 11 41 41 H 1.09005 * 109.58876 * 174.42216 * 16 15 14 42 42 H 1.09001 * 109.58592 * 294.84383 * 16 15 14 43 43 H 0.96994 * 120.00076 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.58340 * 293.82007 * 26 17 16 45 45 H 1.08996 * 109.58816 * 173.39566 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3521 2.0664 -1.0373 5 7 2.7439 3.2420 -0.6967 6 6 2.6694 3.3679 0.6285 7 6 2.1974 2.1729 1.1040 8 6 1.9408 1.8129 2.5085 9 8 2.2514 2.5803 3.3994 10 7 1.3668 0.6306 2.8070 11 6 1.2018 0.2289 4.2062 12 6 0.3489 1.2670 4.9383 13 8 -0.8837 1.4498 4.2387 14 6 2.5749 0.1324 4.8751 15 6 3.4404 -0.8812 4.1232 16 6 2.7748 -2.2597 4.1841 17 7 1.4012 -2.1444 3.6757 18 6 0.9591 -2.9606 2.6688 19 1 1.6487 -3.3093 1.9143 20 6 -0.3753 -3.3397 2.6180 21 7 -1.1663 -3.1025 3.6429 22 14 -1.0484 -4.1865 1.0951 23 1 0.0362 -4.3363 0.0919 24 1 -1.5697 -5.5272 1.4638 25 1 -2.1466 -3.3696 0.5191 26 6 0.5108 -1.1369 4.2680 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.9295 4.2392 1.2114 33 1 1.0629 0.0457 2.0954 34 1 0.1439 0.9199 5.9509 35 1 0.8865 2.2143 4.9808 36 1 -1.4760 2.0956 4.6475 37 1 3.0584 1.1090 4.8544 38 1 2.4531 -0.1904 5.9091 39 1 3.5421 -0.5719 3.0830 40 1 4.4260 -0.9324 4.5861 41 1 3.3347 -2.9633 3.5679 42 1 2.7543 -2.6103 5.2159 43 1 -2.0986 -3.3677 3.6076 44 1 0.3057 -1.3960 5.3067 45 1 -0.4231 -1.0996 3.7073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672482436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:07 Heat of formation + Delta-G solvation = 45.621755 kcal Electronic energy + Delta-G solvation = -30560.871685 eV Core-core repulsion = 26616.915151 eV Total energy + Delta-G solvation = -3943.956535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.21717 -40.08450 -37.50883 -36.01512 -35.76330 -33.81538 -32.70157 -31.42835 -30.78573 -30.23020 -29.76198 -25.60696 -25.19556 -24.82464 -23.64754 -22.40037 -22.06637 -20.93931 -20.27798 -18.96207 -17.84227 -17.04524 -16.87540 -16.63769 -16.23081 -15.46370 -15.03691 -14.88449 -14.65400 -14.34120 -14.19975 -13.96948 -13.53421 -13.17244 -13.13359 -12.99025 -12.58838 -12.49518 -12.19011 -12.07240 -11.96460 -11.62328 -11.51839 -11.28892 -11.09862 -10.97252 -10.91847 -10.61771 -10.35738 -10.15985 -10.12144 -10.11554 -9.84143 -9.74507 -9.35751 -9.17649 -8.71715 -8.62264 -6.83485 -5.99616 -3.49365 1.08102 2.20250 2.42883 3.17717 3.26596 3.29969 3.32816 3.34139 4.26018 4.27936 4.55506 4.58640 4.79637 4.91185 5.11478 5.12349 5.21307 5.25985 5.38969 5.45155 5.56971 5.58410 5.70193 5.72173 5.79821 5.84809 5.96411 6.09776 6.13040 6.18409 6.23984 6.32851 6.37755 6.45658 6.48193 6.67096 6.81279 6.88298 7.11362 7.46864 7.58926 7.82976 7.98283 8.25711 8.36681 8.44961 8.99663 9.61011 10.20825 11.07889 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011461 B = 0.006667 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.566536 B = 4199.050730 C = 5323.595728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.090 3.910 3 N -0.266 5.266 4 N -0.063 5.063 5 N -0.282 5.282 6 C 0.018 3.982 7 C -0.065 4.065 8 C 0.591 3.409 9 O -0.533 6.533 10 N -0.685 5.685 11 C 0.153 3.847 12 C 0.067 3.933 13 O -0.562 6.562 14 C -0.121 4.121 15 C -0.129 4.129 16 C 0.140 3.860 17 N -0.592 5.592 18 C -0.267 4.267 19 H 0.067 0.933 20 C 0.012 3.988 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.274 1.274 24 H -0.287 1.287 25 H -0.285 1.285 26 C 0.174 3.826 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.199 0.801 33 H 0.407 0.593 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.370 0.630 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.020 0.980 43 H 0.257 0.743 44 H 0.036 0.964 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.428 6.966 -0.619 7.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.030 4.030 3 N -0.066 5.066 4 N -0.044 5.044 5 N -0.145 5.145 6 C -0.143 4.143 7 C -0.199 4.199 8 C 0.375 3.625 9 O -0.410 6.410 10 N -0.339 5.339 11 C 0.066 3.934 12 C -0.012 4.012 13 O -0.365 6.365 14 C -0.160 4.160 15 C -0.169 4.169 16 C 0.014 3.986 17 N -0.314 5.314 18 C -0.396 4.396 19 H 0.084 0.916 20 C -0.188 4.188 21 N -0.536 5.536 22 Si 0.720 3.280 23 H -0.199 1.199 24 H -0.214 1.214 25 H -0.212 1.212 26 C 0.047 3.953 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.215 0.785 33 H 0.249 0.751 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.215 0.785 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.864 6.885 -1.881 8.115 hybrid contribution -0.974 -0.517 0.587 1.249 sum 2.890 6.368 -1.294 7.111 Atomic orbital electron populations 1.22277 0.91871 1.05501 1.03740 1.22595 0.97380 0.75656 1.07348 1.48130 1.40640 1.13457 1.04345 1.78161 1.14323 0.99857 1.12057 1.74904 1.17570 1.09466 1.12557 1.23738 1.01328 0.97870 0.91315 1.22559 1.12570 0.94382 0.90349 1.16799 0.78431 0.82417 0.84889 1.90722 1.53583 1.50708 1.45971 1.46349 1.58969 1.18478 1.10127 1.21386 0.95058 0.97456 0.79530 1.22620 0.85159 0.99177 0.94253 1.86532 1.29852 1.65361 1.54773 1.21741 0.95017 1.00065 0.99148 1.21938 0.97629 0.97627 0.99667 1.21009 0.87170 0.93389 0.97008 1.44043 1.08082 1.37838 1.41469 1.19178 0.93562 1.24700 1.02176 0.91566 1.25189 0.98110 0.98474 0.97035 1.69942 1.05879 1.49326 1.28466 0.86412 0.79109 0.79679 0.82782 1.19928 1.21383 1.21184 1.21065 0.94321 0.81503 0.98408 0.90814 0.91178 0.88282 0.86413 0.86095 0.78459 0.75091 0.93516 0.91876 0.78510 0.91203 0.91477 0.92973 0.92787 0.92705 0.96163 0.93296 0.94631 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 9.62 37.16 0.36 -2.05 16 2 C 0.09 1.23 6.25 -4.04 -0.03 1.20 16 3 N -0.27 -4.06 3.39 -57.37 -0.19 -4.25 16 4 N -0.06 -1.03 13.14 60.35 0.79 -0.24 16 5 N -0.28 -4.62 12.35 30.47 0.38 -4.24 16 6 C 0.02 0.27 11.87 -17.35 -0.21 0.06 16 7 C -0.07 -1.04 6.98 -82.33 -0.57 -1.62 16 8 C 0.59 10.08 7.21 -12.61 -0.09 9.99 16 9 O -0.53 -9.70 13.24 5.26 0.07 -9.63 16 10 N -0.68 -11.74 3.57 -48.62 -0.17 -11.92 16 11 C 0.15 2.71 0.45 -131.70 -0.06 2.65 16 12 C 0.07 1.09 5.60 37.16 0.21 1.30 16 13 O -0.56 -9.16 13.08 -35.23 -0.46 -9.62 16 14 C -0.12 -2.00 4.49 -26.69 -0.12 -2.12 16 15 C -0.13 -2.12 5.93 -26.62 -0.16 -2.28 16 16 C 0.14 2.63 6.52 -3.72 -0.02 2.61 16 17 N -0.59 -12.70 2.87 -172.32 -0.49 -13.20 16 18 C -0.27 -6.21 9.58 -15.05 -0.14 -6.35 16 19 H 0.07 1.51 7.85 -52.49 -0.41 1.10 16 20 C 0.01 0.30 5.04 -17.43 -0.09 0.21 16 21 N -0.89 -23.20 11.09 55.49 0.62 -22.58 16 22 Si 0.89 18.98 29.57 -169.99 -5.03 13.95 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.07 7.11 56.52 0.40 -5.66 16 26 C 0.17 3.65 3.81 -3.71 -0.01 3.63 16 27 H 0.07 1.13 7.12 -51.93 -0.37 0.76 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.12 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.12 1.79 6.02 -51.93 -0.31 1.48 16 32 H 0.20 2.46 8.06 -52.48 -0.42 2.04 16 33 H 0.41 7.05 3.06 -40.82 -0.12 6.93 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.04 6.16 -51.93 -0.32 0.72 16 36 H 0.37 4.26 9.12 45.56 0.42 4.68 16 37 H 0.07 1.17 6.42 -51.93 -0.33 0.84 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 0.89 7.53 -51.93 -0.39 0.50 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.10 2.50 5.99 -51.93 -0.31 2.19 16 LS Contribution 355.69 15.07 5.36 5.36 Total: -1.00 -28.42 355.69 -5.59 -34.00 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -5.51 Total: 15.12 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -0.94 Total: 7.23 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.92 Total: -56.42 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.39 Total: -19.24 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.42 -5.59 -34.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672482436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.625 kcal (2) G-P(sol) polarization free energy of solvation -28.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds