Wall clock time and date at job start Fri Apr 10 2020 18:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 N 1.46497 * 109.46967 * 2 1 4 4 N 1.28525 * 124.44198 * 269.99516 * 3 2 1 5 5 C 1.31125 * 109.05778 * 179.73902 * 4 3 2 6 6 C 1.40917 * 105.77903 * 0.39803 * 5 4 3 7 7 C 1.47802 * 127.24019 * 179.87524 * 6 5 4 8 8 O 1.21558 * 120.00101 * 359.70457 * 7 6 5 9 9 N 1.34777 * 120.00305 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00173 * 174.42051 * 9 7 6 11 11 C 1.53003 * 109.54005 * 304.10077 * 10 9 7 12 12 N 1.46499 * 109.47226 * 305.58095 * 11 10 9 13 13 C 1.36939 * 120.00106 * 175.02117 * 12 11 10 14 14 H 1.07996 * 119.99922 * 0.02562 * 13 12 11 15 15 C 1.38807 * 120.00192 * 180.02562 * 13 12 11 16 16 N 1.31626 * 119.99834 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00052 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46933 * 60.00595 * 17 15 13 19 19 H 1.48504 * 109.46899 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47284 * 300.00124 * 17 15 13 21 21 C 1.53175 * 109.54278 * 183.92697 * 10 9 7 22 22 C 1.53284 * 109.06099 * 297.02582 * 21 10 9 23 23 O 1.42902 * 109.46392 * 302.44575 * 22 21 10 24 24 C 1.42904 * 114.09483 * 61.15656 * 23 22 21 25 25 C 1.53092 * 109.41514 * 298.84527 * 24 23 22 26 26 N 1.28585 * 124.44774 * 89.99852 * 3 2 1 27 27 H 1.09002 * 109.46864 * 300.00377 * 1 2 3 28 28 H 1.09003 * 109.46681 * 60.00334 * 1 2 3 29 29 H 1.09001 * 109.46662 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46864 * 239.99623 * 2 1 3 31 31 H 1.09003 * 109.46681 * 119.99666 * 2 1 3 32 32 H 1.08011 * 127.11218 * 180.24912 * 5 4 3 33 33 H 0.96999 * 119.99809 * 354.41964 * 9 7 6 34 34 H 1.09000 * 109.47320 * 65.58222 * 11 10 9 35 35 H 1.08998 * 109.46781 * 185.58374 * 11 10 9 36 36 H 0.97003 * 120.00285 * 355.03648 * 12 11 10 37 37 H 0.96999 * 119.99501 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.52775 * 57.01610 * 21 10 9 39 39 H 1.09003 * 109.52612 * 177.20541 * 21 10 9 40 40 H 1.09005 * 109.45537 * 182.45031 * 22 21 10 41 41 H 1.09004 * 109.46730 * 62.45236 * 22 21 10 42 42 H 1.08998 * 109.48183 * 178.86206 * 24 23 22 43 43 H 1.08999 * 109.48987 * 58.83195 * 24 23 22 44 44 H 1.08995 * 109.52344 * 297.69983 * 25 24 23 45 45 H 1.09001 * 109.57169 * 177.54393 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2608 2.0665 -1.0599 5 6 2.6768 3.2604 -0.7121 6 6 2.6854 3.2677 0.6970 7 6 3.0792 4.3830 1.5833 8 8 3.4514 5.4369 1.1053 9 7 3.0307 4.2299 2.9215 10 6 3.5355 5.2890 3.7988 11 6 4.9897 5.6012 3.4397 12 7 5.7790 4.3678 3.4827 13 6 7.0929 4.3818 3.0972 14 1 7.5474 5.3023 2.7617 15 6 7.8406 3.2130 3.1374 16 7 7.2865 2.0911 3.5457 17 14 9.6331 3.2324 2.6121 18 1 10.3916 4.1733 3.4750 19 1 10.2030 1.8677 2.7465 20 1 9.7294 3.6713 1.1968 21 6 3.4555 4.8278 5.2572 22 6 1.9869 4.5938 5.6284 23 8 1.2441 5.7955 5.4135 24 6 1.2458 6.2479 4.0579 25 6 2.6826 6.5492 3.6238 26 7 2.2608 2.0670 1.0604 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 2.9575 4.0700 -1.3697 33 1 2.6617 3.4183 3.3037 34 1 5.0332 6.0256 2.4367 35 1 5.3949 6.3169 4.1550 36 1 5.3708 3.5410 3.7842 37 1 7.8089 1.2743 3.5735 38 1 4.0160 3.9007 5.3775 39 1 3.8769 5.5959 5.9059 40 1 1.9189 4.3072 6.6780 41 1 1.5775 3.7973 5.0069 42 1 0.6439 7.1529 3.9760 43 1 0.8269 5.4733 3.4156 44 1 3.0883 7.3520 4.2394 45 1 2.6917 6.8527 2.5770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673723489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:33 Heat of formation + Delta-G solvation = 44.401928 kcal Electronic energy + Delta-G solvation = -28949.262819 eV Core-core repulsion = 25005.253388 eV Total energy + Delta-G solvation = -3944.009430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.52199 -40.38469 -38.21305 -35.73533 -34.89856 -33.66119 -32.72388 -31.48045 -31.01903 -30.41882 -30.19044 -26.55708 -25.17745 -23.89337 -23.69915 -23.20781 -21.53592 -21.44604 -20.66516 -18.90219 -17.84668 -17.20052 -17.06998 -16.50788 -15.92616 -15.85227 -15.39205 -15.10100 -14.70916 -14.44151 -14.35843 -14.21248 -14.02238 -13.49280 -13.12344 -13.00536 -12.71630 -12.51564 -12.39093 -12.33793 -11.85832 -11.74672 -11.68446 -11.50193 -11.14968 -10.90465 -10.88417 -10.77297 -10.51043 -10.33334 -10.28361 -10.07317 -9.71318 -9.59488 -9.36161 -9.32125 -8.77663 -8.55582 -6.83192 -5.71438 -2.97832 1.51296 2.10194 2.17179 3.32488 3.47614 3.51185 3.52935 3.69194 3.98295 4.02522 4.54534 4.60999 4.63004 4.83457 4.85407 5.02512 5.05102 5.12134 5.14321 5.17829 5.28094 5.35602 5.40616 5.49245 5.63876 5.66274 5.78114 5.79980 5.81676 5.97359 6.07193 6.10942 6.13536 6.26906 6.33629 6.49189 6.56712 6.61616 6.88309 7.06564 7.29300 7.76217 7.82230 8.24937 8.47714 8.54576 9.59248 10.16782 10.52426 11.51540 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.007925 B = 0.005725 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3532.412007 B = 4889.648042 C = 7187.142501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.133 3.867 3 N -0.144 5.144 4 N -0.295 5.295 5 C 0.033 3.967 6 C -0.036 4.036 7 C 0.621 3.379 8 O -0.521 6.521 9 N -0.698 5.698 10 C 0.174 3.826 11 C 0.141 3.859 12 N -0.725 5.725 13 C -0.230 4.230 14 H 0.068 0.932 15 C -0.015 4.015 16 N -0.936 5.936 17 Si 0.905 3.095 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.287 1.287 21 C -0.154 4.154 22 C 0.060 3.940 23 O -0.385 6.385 24 C 0.066 3.934 25 C -0.164 4.164 26 N -0.247 5.247 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.205 0.795 33 H 0.401 0.599 34 H 0.051 0.949 35 H 0.023 0.977 36 H 0.382 0.618 37 H 0.253 0.747 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.519 -1.263 -2.683 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 N -0.047 5.047 4 N -0.135 5.135 5 C -0.151 4.151 6 C -0.199 4.199 7 C 0.404 3.596 8 O -0.395 6.395 9 N -0.349 5.349 10 C 0.088 3.912 11 C 0.013 3.987 12 N -0.369 5.369 13 C -0.361 4.361 14 H 0.086 0.914 15 C -0.210 4.210 16 N -0.586 5.586 17 Si 0.736 3.264 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.214 1.214 21 C -0.192 4.192 22 C -0.017 4.017 23 O -0.304 6.304 24 C -0.011 4.011 25 C -0.203 4.203 26 N -0.095 5.095 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.222 0.778 33 H 0.236 0.764 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.216 0.784 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.599 -1.639 -2.923 17.915 hybrid contribution 1.419 -0.213 -0.321 1.471 sum -16.180 -1.852 -3.244 16.605 Atomic orbital electron populations 1.22182 0.93098 1.03847 1.03643 1.22055 0.95914 0.74473 1.06213 1.48161 1.43919 1.13376 0.99231 1.73942 1.18345 1.05436 1.15727 1.24783 1.01368 0.95093 0.93843 1.23161 1.08351 0.93524 0.94853 1.16426 0.77004 0.84714 0.81430 1.90731 1.46760 1.26606 1.75383 1.45739 1.62794 1.21282 1.05076 1.20642 0.95171 0.86593 0.88758 1.21097 0.86924 0.90915 0.99773 1.42210 1.09158 1.05941 1.79592 1.19180 0.86925 0.94587 1.35409 0.91369 1.24671 0.98149 0.95620 1.02608 1.69648 1.35811 0.99046 1.54048 0.86292 0.85295 0.76356 0.78437 1.21306 1.21843 1.21401 1.22471 0.97223 1.04446 0.95097 1.22643 0.90837 0.86683 1.01489 1.87890 1.72504 1.42528 1.27511 1.22514 0.96392 0.99226 0.82987 1.22567 0.95500 0.97843 1.04345 1.74349 1.15121 1.04349 1.15705 0.91361 0.91454 0.89580 0.87226 0.87035 0.77779 0.76414 0.93156 0.95986 0.78435 0.93748 0.89103 0.89349 0.88764 0.93510 0.89224 0.93524 0.90205 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.24 37.16 0.38 -0.76 16 2 C 0.13 1.17 7.24 -4.04 -0.03 1.14 16 3 N -0.14 -1.98 3.94 -10.61 -0.04 -2.02 16 4 N -0.30 -4.38 12.01 30.90 0.37 -4.01 16 5 C 0.03 0.51 12.04 -16.84 -0.20 0.31 16 6 C -0.04 -0.61 7.21 -82.68 -0.60 -1.20 16 7 C 0.62 11.32 7.24 -12.35 -0.09 11.23 16 8 O -0.52 -10.47 13.26 5.31 0.07 -10.40 16 9 N -0.70 -11.56 3.75 -48.39 -0.18 -11.74 16 10 C 0.17 2.89 0.32 -131.64 -0.04 2.84 16 11 C 0.14 2.98 4.79 -4.04 -0.02 2.96 16 12 N -0.72 -18.42 5.21 -59.91 -0.31 -18.73 16 13 C -0.23 -6.58 9.99 -15.06 -0.15 -6.74 16 14 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 15 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 16 N -0.94 -28.43 13.06 55.49 0.72 -27.71 16 17 Si 0.90 23.07 29.55 -169.99 -5.02 18.04 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 21 C -0.15 -2.30 4.84 -26.49 -0.13 -2.43 16 22 C 0.06 0.76 6.67 37.30 0.25 1.01 16 23 O -0.39 -5.30 10.77 -35.23 -0.38 -5.68 16 24 C 0.07 0.84 6.68 37.20 0.25 1.09 16 25 C -0.16 -2.38 4.82 -26.60 -0.13 -2.51 16 26 N -0.25 -3.91 11.85 33.42 0.40 -3.51 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.21 2.70 8.06 -52.48 -0.42 2.28 16 33 H 0.40 6.18 7.18 -40.82 -0.29 5.89 16 34 H 0.05 1.17 6.25 -51.93 -0.32 0.85 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.38 10.01 6.51 -40.82 -0.27 9.75 16 37 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.09 1.50 7.22 -51.93 -0.37 1.13 16 39 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.56 7.01 -51.93 -0.36 0.19 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.60 7.75 -51.93 -0.40 0.20 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.09 1.50 6.25 -51.93 -0.32 1.18 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -34.69 366.08 -6.01 -40.70 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -6.55 Total: 13.14 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.60 Total: 6.40 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: 0.96 Total: -67.72 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.31 Total: -16.08 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.69 -6.01 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673723489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.099 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds