Wall clock time and date at job start Fri Apr 10 2020 18:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.08998 * 109.47857 * 2 1 4 4 C 1.52998 * 109.47272 * 120.00153 * 2 1 3 5 5 C 1.52996 * 109.47665 * 184.99831 * 4 2 1 6 6 N 1.46504 * 109.47478 * 179.97438 * 5 4 2 7 7 C 1.34769 * 119.99835 * 180.02562 * 6 5 4 8 8 O 1.21628 * 120.00737 * 5.13477 * 7 6 5 9 9 C 1.47163 * 120.00108 * 185.14221 * 7 6 5 10 10 C 1.38407 * 126.88122 * 5.70801 * 9 7 6 11 11 C 1.39672 * 105.36216 * 180.02562 * 10 9 7 12 12 N 1.30868 * 107.85830 * 359.97438 * 11 10 9 13 13 N 1.28437 * 110.92708 * 0.02562 * 12 11 10 14 14 C 1.46504 * 125.18810 * 179.73719 * 13 12 11 15 15 N 1.46903 * 109.47343 * 239.99782 * 2 1 3 16 16 C 1.46894 * 111.00091 * 84.99831 * 15 2 1 17 17 C 1.50697 * 109.47638 * 179.97438 * 16 15 2 18 18 O 1.21290 * 119.99523 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00583 * 180.02562 * 17 16 15 20 20 C 1.37092 * 120.00345 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99833 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00127 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00242 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00125 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47307 * 89.99543 * 24 22 20 26 26 H 1.48498 * 109.47041 * 209.99687 * 24 22 20 27 27 H 1.48495 * 109.46795 * 329.99615 * 24 22 20 28 28 H 1.08998 * 109.47857 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47579 * 300.00201 * 1 2 3 30 30 H 1.09005 * 109.47146 * 59.99685 * 1 2 3 31 31 H 1.09004 * 109.47129 * 64.99482 * 4 2 1 32 32 H 1.09008 * 109.47171 * 304.99672 * 4 2 1 33 33 H 1.09004 * 109.47132 * 59.99653 * 5 4 2 34 34 H 1.08997 * 109.47117 * 299.99909 * 5 4 2 35 35 H 0.96996 * 119.99697 * 359.97438 * 6 5 4 36 36 H 1.08002 * 127.32296 * 359.97438 * 10 9 7 37 37 H 1.07996 * 126.07080 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.47425 * 86.09113 * 14 13 12 39 39 H 1.08996 * 109.46850 * 206.09655 * 14 13 12 40 40 H 1.08996 * 109.46791 * 326.09371 * 14 13 12 41 41 H 1.00896 * 110.99781 * 321.05144 * 15 2 1 42 42 H 1.09003 * 109.47567 * 300.00805 * 16 15 2 43 43 H 1.09002 * 109.46982 * 60.00328 * 16 15 2 44 44 H 0.97009 * 119.99480 * 0.02562 * 19 17 16 45 45 H 0.96997 * 120.00434 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5647 -0.6134 1.3137 6 7 4.0530 -1.3035 2.5102 7 6 5.3738 -1.3388 2.7759 8 8 6.1519 -0.7200 2.0753 9 6 5.8747 -2.1262 3.9138 10 6 5.1381 -2.9655 4.7315 11 6 6.0520 -3.4776 5.6554 12 7 7.2260 -2.9672 5.3836 13 7 7.1596 -2.1752 4.3748 14 6 8.2885 -1.4328 3.8085 15 7 2.0196 -0.6925 -1.1994 16 6 2.0824 0.2224 -2.3469 17 6 2.5885 -0.5216 -3.5557 18 8 2.8688 -1.6985 -3.4698 19 7 2.7296 0.1207 -4.7322 20 6 3.1895 -0.5564 -5.8319 21 1 3.4384 -1.6046 -5.7557 22 6 3.3355 0.1059 -7.0447 23 7 3.0323 1.3812 -7.1376 24 14 3.9615 -0.8168 -8.5434 25 1 2.8122 -1.3980 -9.2827 26 1 4.6974 0.1202 -9.4298 27 1 4.8725 -1.9060 -8.1091 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.7515 -1.7715 1.2056 32 1 1.6053 -0.2617 2.1370 33 1 3.8531 0.4369 1.3573 34 1 3.9993 -1.0729 0.4260 35 1 3.4256 -1.7344 3.1115 36 1 4.0812 -3.1786 4.6692 37 1 5.8293 -4.1714 6.4524 38 1 8.8113 -2.0609 3.0872 39 1 7.9203 -0.5362 3.3100 40 1 8.9739 -1.1490 4.6070 41 1 1.4495 -1.4979 -1.4100 42 1 1.0870 0.6163 -2.5525 43 1 2.7588 1.0460 -2.1182 44 1 2.5057 1.0621 -4.8007 45 1 3.1338 1.8435 -7.9842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674172335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:46 Heat of formation + Delta-G solvation = 2.277282 kcal Electronic energy + Delta-G solvation = -26316.035374 eV Core-core repulsion = 22370.199282 eV Total energy + Delta-G solvation = -3945.836092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.77363 -39.57771 -38.46847 -37.12194 -35.08413 -33.90669 -33.49455 -31.94811 -31.24246 -30.83984 -28.77657 -27.34447 -26.32691 -24.48407 -23.78057 -22.61646 -21.53265 -20.97822 -20.10338 -19.24381 -18.28477 -17.86959 -16.58535 -16.39444 -16.04280 -15.76670 -15.67106 -15.20635 -14.84353 -14.60644 -14.47348 -14.08983 -13.97621 -13.77386 -13.66804 -13.35753 -13.10337 -13.03911 -12.80360 -12.58336 -12.17873 -11.95517 -11.57768 -11.55107 -11.38765 -11.26315 -11.11056 -11.02980 -10.90450 -10.38369 -10.24307 -10.20381 -9.55516 -9.49738 -9.33708 -9.15511 -8.46115 -8.04709 -7.94493 -6.40549 -3.81222 1.00951 2.12159 2.33192 2.97407 3.04158 3.18722 3.27351 3.33686 3.92311 4.09139 4.25703 4.31801 4.34270 4.66128 4.80930 4.92094 4.95096 5.00597 5.07691 5.16966 5.25485 5.27092 5.28633 5.33917 5.37370 5.44167 5.51691 5.65757 5.75040 5.81091 5.96187 6.05483 6.07709 6.15796 6.16965 6.28230 6.29212 6.41589 7.19108 7.22933 7.56419 7.65477 7.75401 7.93474 8.07616 8.62555 9.19254 9.55735 10.07205 10.77215 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.002207 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.670886 B =12684.415880 C =14014.496520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 H 0.080 0.920 4 C -0.116 4.116 5 C 0.123 3.877 6 N -0.713 5.713 7 C 0.587 3.413 8 O -0.535 6.535 9 C -0.035 4.035 10 C -0.192 4.192 11 C -0.004 4.004 12 N -0.281 5.281 13 N -0.257 5.257 14 C 0.082 3.918 15 N -0.663 5.663 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.401 0.599 36 H 0.161 0.839 37 H 0.187 0.813 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.350 0.650 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 -2.106 24.755 24.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 H 0.098 0.902 4 C -0.154 4.154 5 C 0.001 3.999 6 N -0.364 5.364 7 C 0.372 3.628 8 O -0.413 6.413 9 C -0.164 4.164 10 C -0.221 4.221 11 C -0.180 4.180 12 N -0.114 5.114 13 N -0.044 5.044 14 C -0.057 4.057 15 N -0.295 5.295 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.111 0.889 35 H 0.235 0.765 36 H 0.178 0.822 37 H 0.204 0.796 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.170 0.830 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.461 -2.158 24.525 24.663 hybrid contribution -1.957 0.065 -1.038 2.216 sum -0.496 -2.093 23.487 23.585 Atomic orbital electron populations 1.22510 0.97091 1.02322 1.02253 1.21497 0.92487 0.98168 0.90499 0.90155 1.21758 0.94239 1.01905 0.97514 1.21484 0.94118 0.97370 0.86933 1.45720 1.06243 1.56869 1.27533 1.16888 0.82969 0.80324 0.82592 1.90821 1.55776 1.44495 1.50169 1.21499 0.86782 1.06389 1.01726 1.22246 1.00939 1.01336 0.97584 1.23574 0.88513 1.03609 1.02276 1.73222 1.26092 1.07401 1.04696 1.45653 1.07324 1.30962 1.20487 1.22406 0.86392 0.97358 0.99590 1.60209 1.57562 1.09141 1.02625 1.21698 0.99884 0.95741 0.90901 1.19826 0.85134 0.88246 0.84187 1.90524 1.55301 1.16304 1.84608 1.41868 1.57807 1.12444 1.07980 1.19696 1.39920 0.96406 0.86770 0.87951 1.25261 0.97696 0.95775 0.99264 1.69610 1.48784 1.08831 1.27138 0.85858 0.78865 0.78985 0.80596 1.20452 1.20926 1.19403 0.92270 0.92195 0.92316 0.90957 0.91352 0.91550 0.88940 0.76490 0.82166 0.79638 0.89496 0.86907 0.88968 0.82990 0.93841 0.89611 0.77480 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 9.16 37.15 0.34 -1.32 16 2 C 0.08 0.89 2.59 -67.72 -0.18 0.72 16 3 H 0.08 0.84 7.80 -51.93 -0.40 0.44 16 4 C -0.12 -1.01 5.00 -26.73 -0.13 -1.14 16 5 C 0.12 1.37 5.57 -4.04 -0.02 1.35 16 6 N -0.71 -6.93 5.53 -61.47 -0.34 -7.27 16 7 C 0.59 7.25 7.78 -12.64 -0.10 7.15 16 8 O -0.54 -8.38 14.69 5.25 0.08 -8.30 16 9 C -0.03 -0.39 6.96 -82.06 -0.57 -0.96 16 10 C -0.19 -1.63 10.50 -38.98 -0.41 -2.04 16 11 C 0.00 -0.04 12.03 -17.43 -0.21 -0.25 16 12 N -0.28 -3.15 11.90 30.59 0.36 -2.78 16 13 N -0.26 -2.90 3.75 -63.88 -0.24 -3.14 16 14 C 0.08 0.74 10.88 59.85 0.65 1.39 16 15 N -0.66 -9.84 5.33 -108.00 -0.58 -10.42 16 16 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 17 C 0.44 10.33 7.82 -10.99 -0.09 10.25 16 18 O -0.58 -15.79 15.78 5.55 0.09 -15.70 16 19 N -0.56 -14.33 5.29 -10.97 -0.06 -14.39 16 20 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 24 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.37 7.75 -51.93 -0.40 0.97 16 35 H 0.40 2.62 7.56 -40.82 -0.31 2.31 16 36 H 0.16 0.82 7.63 -52.49 -0.40 0.42 16 37 H 0.19 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.11 1.10 6.22 -51.93 -0.32 0.78 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.35 5.44 8.17 -39.29 -0.32 5.12 16 42 H 0.04 0.66 7.44 -51.93 -0.39 0.28 16 43 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 44 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -35.07 382.10 -6.78 -41.85 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -6.57 Total: 14.19 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -0.98 Total: 7.94 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -0.12 Total: -61.94 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.16 Total: -24.00 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.07 -6.78 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674172335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.123 kcal (2) G-P(sol) polarization free energy of solvation -35.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds