Wall clock time and date at job start Fri Apr 10 2020 18:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.08998 * 109.47857 * 2 1 4 4 C 1.52998 * 109.47272 * 120.00153 * 2 1 3 5 5 C 1.52996 * 109.47665 * 184.99831 * 4 2 1 6 6 N 1.46504 * 109.47478 * 179.97438 * 5 4 2 7 7 C 1.34769 * 119.99835 * 180.02562 * 6 5 4 8 8 O 1.21628 * 120.00737 * 5.13477 * 7 6 5 9 9 C 1.47163 * 120.00108 * 185.14221 * 7 6 5 10 10 C 1.38407 * 126.88122 * 5.70801 * 9 7 6 11 11 C 1.39672 * 105.36216 * 180.02562 * 10 9 7 12 12 N 1.30868 * 107.85830 * 359.97438 * 11 10 9 13 13 N 1.28437 * 110.92708 * 0.02562 * 12 11 10 14 14 C 1.46504 * 125.18810 * 179.73719 * 13 12 11 15 15 N 1.46903 * 109.47343 * 239.99782 * 2 1 3 16 16 C 1.46894 * 111.00091 * 84.99831 * 15 2 1 17 17 C 1.50697 * 109.47638 * 179.97438 * 16 15 2 18 18 O 1.21290 * 119.99523 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00583 * 180.02562 * 17 16 15 20 20 C 1.37092 * 120.00345 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99833 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00127 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00242 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00125 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47307 * 89.99543 * 24 22 20 26 26 H 1.48498 * 109.47041 * 209.99687 * 24 22 20 27 27 H 1.48495 * 109.46795 * 329.99615 * 24 22 20 28 28 H 1.08998 * 109.47857 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47579 * 300.00201 * 1 2 3 30 30 H 1.09005 * 109.47146 * 59.99685 * 1 2 3 31 31 H 1.09004 * 109.47129 * 64.99482 * 4 2 1 32 32 H 1.09008 * 109.47171 * 304.99672 * 4 2 1 33 33 H 1.09004 * 109.47132 * 59.99653 * 5 4 2 34 34 H 1.08997 * 109.47117 * 299.99909 * 5 4 2 35 35 H 0.96996 * 119.99697 * 359.97438 * 6 5 4 36 36 H 1.08002 * 127.32296 * 359.97438 * 10 9 7 37 37 H 1.07996 * 126.07080 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.47425 * 86.09113 * 14 13 12 39 39 H 1.08996 * 109.46850 * 206.09655 * 14 13 12 40 40 H 1.08996 * 109.46791 * 326.09371 * 14 13 12 41 41 H 1.00896 * 110.99781 * 321.05144 * 15 2 1 42 42 H 1.09003 * 109.47567 * 300.00805 * 16 15 2 43 43 H 1.09002 * 109.46982 * 60.00328 * 16 15 2 44 44 H 0.97009 * 119.99480 * 0.02562 * 19 17 16 45 45 H 0.96997 * 120.00434 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5647 -0.6134 1.3137 6 7 4.0530 -1.3035 2.5102 7 6 5.3738 -1.3388 2.7759 8 8 6.1519 -0.7200 2.0753 9 6 5.8747 -2.1262 3.9138 10 6 5.1381 -2.9655 4.7315 11 6 6.0520 -3.4776 5.6554 12 7 7.2260 -2.9672 5.3836 13 7 7.1596 -2.1752 4.3748 14 6 8.2885 -1.4328 3.8085 15 7 2.0196 -0.6925 -1.1994 16 6 2.0824 0.2224 -2.3469 17 6 2.5885 -0.5216 -3.5557 18 8 2.8688 -1.6985 -3.4698 19 7 2.7296 0.1207 -4.7322 20 6 3.1895 -0.5564 -5.8319 21 1 3.4384 -1.6046 -5.7557 22 6 3.3355 0.1059 -7.0447 23 7 3.0323 1.3812 -7.1376 24 14 3.9615 -0.8168 -8.5434 25 1 2.8122 -1.3980 -9.2827 26 1 4.6974 0.1202 -9.4298 27 1 4.8725 -1.9060 -8.1091 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.7515 -1.7715 1.2056 32 1 1.6053 -0.2617 2.1370 33 1 3.8531 0.4369 1.3573 34 1 3.9993 -1.0729 0.4260 35 1 3.4256 -1.7344 3.1115 36 1 4.0812 -3.1786 4.6692 37 1 5.8293 -4.1714 6.4524 38 1 8.8113 -2.0609 3.0872 39 1 7.9203 -0.5362 3.3100 40 1 8.9739 -1.1490 4.6070 41 1 1.4495 -1.4979 -1.4100 42 1 1.0870 0.6163 -2.5525 43 1 2.7588 1.0460 -2.1182 44 1 2.5057 1.0621 -4.8007 45 1 3.1338 1.8435 -7.9842 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674172335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:45 Heat of formation + Delta-G solvation = -26.037522 kcal Electronic energy + Delta-G solvation = -26317.263196 eV Core-core repulsion = 22370.199282 eV Total energy + Delta-G solvation = -3947.063914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.51247 -40.53737 -40.17466 -38.29504 -36.16914 -35.82713 -34.23947 -33.33289 -32.86014 -31.81951 -29.60677 -28.04309 -27.94326 -25.85545 -25.00034 -23.43222 -22.30567 -21.85522 -21.17039 -20.84850 -19.91821 -19.07516 -17.74457 -17.37206 -17.25532 -16.85273 -16.59824 -16.53409 -16.30665 -15.93491 -15.56134 -15.43698 -15.21839 -14.76670 -14.48530 -14.45400 -14.24547 -14.02598 -13.75434 -13.54779 -13.50023 -13.28955 -13.08424 -12.83629 -12.64758 -12.43009 -12.24502 -12.17804 -12.10108 -11.85957 -11.70661 -11.50839 -11.21185 -10.42154 -10.33942 -10.07220 -10.01650 -9.98137 -9.22539 -8.47189 -5.95790 0.20203 1.37014 1.39023 1.40558 1.53497 1.64210 2.05932 2.11839 2.21665 2.28701 2.96852 3.20210 3.54651 3.57361 3.62124 3.89161 4.11742 4.17108 4.24486 4.25888 4.35891 4.36035 4.47913 4.51847 4.56365 4.58275 4.63685 4.66282 4.78100 4.85117 4.93768 5.05045 5.22272 5.24107 5.34293 5.40231 5.41216 5.54516 5.70494 5.92713 6.16221 6.40945 6.49672 6.60124 7.01855 7.10217 7.12474 7.56565 8.12106 8.70240 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.002207 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.670886 B =12684.415880 C =14014.496520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.083 3.917 3 H 0.084 0.916 4 C -0.103 4.103 5 C 0.129 3.871 6 N -0.695 5.695 7 C 0.583 3.417 8 O -0.580 6.580 9 C -0.063 4.063 10 C -0.174 4.174 11 C -0.006 4.006 12 N -0.305 5.305 13 N -0.273 5.273 14 C 0.081 3.919 15 N -0.678 5.678 16 C 0.067 3.933 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.077 0.923 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.269 1.269 26 H -0.271 1.271 27 H -0.275 1.275 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.419 0.581 36 H 0.197 0.803 37 H 0.220 0.780 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.345 0.655 42 H 0.067 0.933 43 H 0.099 0.901 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.885 -2.287 26.497 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.027 4.027 3 H 0.102 0.898 4 C -0.142 4.142 5 C 0.006 3.994 6 N -0.347 5.347 7 C 0.369 3.631 8 O -0.460 6.460 9 C -0.191 4.191 10 C -0.203 4.203 11 C -0.181 4.181 12 N -0.138 5.138 13 N -0.061 5.061 14 C -0.059 4.059 15 N -0.310 5.310 16 C -0.066 4.066 17 C 0.224 3.776 18 O -0.510 6.510 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.214 4.214 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.194 1.194 26 H -0.195 1.195 27 H -0.200 1.200 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.257 0.743 36 H 0.214 0.786 37 H 0.237 0.763 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.130 0.870 41 H 0.164 0.836 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.248 -2.321 26.305 26.409 hybrid contribution -1.459 0.086 -1.480 2.080 sum -1.707 -2.236 24.826 24.984 Atomic orbital electron populations 1.22429 0.95360 1.02720 1.02968 1.21640 0.93815 0.98121 0.89119 0.89819 1.21707 0.92017 1.02510 0.97917 1.21304 0.95771 0.96461 0.85862 1.45545 1.05803 1.56163 1.27167 1.17201 0.83380 0.79951 0.82591 1.90796 1.56972 1.46457 1.51810 1.21576 0.87477 1.07739 1.02295 1.22731 1.02424 0.99238 0.95891 1.24251 0.87718 1.03351 1.02756 1.73206 1.27601 1.07983 1.05012 1.45841 1.07760 1.31565 1.20889 1.22427 0.86439 0.96764 1.00232 1.60219 1.58648 1.09135 1.03032 1.21528 1.00917 0.95350 0.88797 1.20983 0.83320 0.88045 0.85212 1.90488 1.56627 1.18416 1.85469 1.41951 1.58412 1.12598 1.08280 1.19646 1.42148 0.95884 0.88596 0.90467 1.26040 0.97289 0.96645 1.01407 1.69669 1.48727 1.09633 1.28105 0.84936 0.78454 0.77799 0.77200 1.19430 1.19535 1.19980 0.92050 0.89746 0.93312 0.90346 0.87811 0.92371 0.93086 0.74308 0.78597 0.76315 0.89529 0.88223 0.87045 0.83605 0.91471 0.88319 0.76998 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 9.16 71.98 0.66 -2.01 16 2 C 0.08 1.57 2.59 44.91 0.12 1.69 16 3 H 0.08 1.56 7.80 -2.39 -0.02 1.54 16 4 C -0.10 -1.53 5.00 30.59 0.15 -1.38 16 5 C 0.13 2.80 5.57 86.38 0.48 3.28 16 6 N -0.69 -12.70 5.53 -466.64 -2.58 -15.28 16 7 C 0.58 14.46 7.78 86.59 0.67 15.14 16 8 O -0.58 -19.10 14.69 -4.12 -0.06 -19.17 16 9 C -0.06 -1.35 6.96 40.79 0.28 -1.06 16 10 C -0.17 -2.51 10.50 22.66 0.24 -2.27 16 11 C -0.01 -0.09 12.03 85.18 1.02 0.94 16 12 N -0.30 -6.52 11.90 -57.14 -0.68 -7.20 16 13 N -0.27 -6.14 3.75 -356.02 -1.33 -7.47 16 14 C 0.08 1.54 10.88 127.77 1.39 2.93 16 15 N -0.68 -19.71 5.33 -495.61 -2.64 -22.35 16 16 C 0.07 2.23 5.96 85.56 0.51 2.74 16 17 C 0.44 20.94 7.82 87.66 0.69 21.63 16 18 O -0.62 -34.91 15.78 -3.06 -0.05 -34.96 16 19 N -0.58 -29.94 5.29 -306.99 -1.62 -31.56 16 20 C -0.33 -19.25 9.68 84.04 0.81 -18.43 16 21 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 23 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 24 Si 0.99 43.65 29.55 68.60 2.03 45.67 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 28 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.85 7.45 -2.38 -0.02 0.83 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.05 1.56 7.75 -2.39 -0.02 1.54 16 35 H 0.42 4.31 7.56 -92.71 -0.70 3.61 16 36 H 0.20 1.18 7.63 -2.91 -0.02 1.15 16 37 H 0.22 1.57 8.06 -2.91 -0.02 1.54 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.10 2.14 6.22 -2.39 -0.01 2.12 16 40 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.34 10.59 8.17 -89.70 -0.73 9.86 16 42 H 0.07 1.95 7.44 -2.39 -0.02 1.93 16 43 H 0.10 3.07 8.06 -2.39 -0.02 3.05 16 44 H 0.40 19.55 7.90 -92.70 -0.73 18.82 16 45 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -79.55 382.10 -0.29 -79.84 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: -1.12 Total: 39.56 kcal Atomic # 6 Polarization: 15.39 SS G_CDS: 7.50 Total: 22.89 kcal Atomic # 7 Polarization: -125.26 SS G_CDS: -8.58 Total: -133.83 kcal Atomic # 8 Polarization: -54.02 SS G_CDS: -0.11 Total: -54.13 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -79.55 -0.29 -79.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674172335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.802 kcal (2) G-P(sol) polarization free energy of solvation -79.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds