Wall clock time and date at job start Fri Apr 10 2020 18:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47173 * 2 1 4 4 C 1.34816 * 126.59492 * 125.27102 * 3 2 1 5 5 C 1.36598 * 106.83675 * 180.10537 * 4 3 2 6 6 C 1.47522 * 125.76945 * 179.89976 * 5 4 3 7 7 O 1.21602 * 119.99677 * 352.83137 * 6 5 4 8 8 N 1.34771 * 120.00265 * 172.83031 * 6 5 4 9 9 C 1.47149 * 120.98253 * 353.14241 * 8 6 5 10 10 C 1.53290 * 108.38688 * 230.55652 * 9 8 6 11 11 O 1.42958 * 109.22399 * 307.69551 * 10 9 8 12 12 C 1.42960 * 114.16628 * 62.58057 * 11 10 9 13 13 H 1.09000 * 109.55513 * 57.37000 * 12 11 10 14 14 C 1.53004 * 109.51583 * 177.49970 * 12 11 10 15 15 H 1.09001 * 109.47418 * 174.74987 * 14 12 11 16 16 C 1.52998 * 109.47224 * 54.74305 * 14 12 11 17 17 N 1.46502 * 109.46764 * 294.74406 * 14 12 11 18 18 C 1.36930 * 120.00152 * 205.00045 * 17 14 12 19 19 H 1.08001 * 120.00350 * 0.02562 * 18 17 14 20 20 C 1.38812 * 120.00479 * 180.02562 * 18 17 14 21 21 N 1.31614 * 120.00703 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99721 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47359 * 89.99853 * 22 20 18 24 24 H 1.48500 * 109.47018 * 210.00065 * 22 20 18 25 25 H 1.48505 * 109.46963 * 329.99666 * 22 20 18 26 26 C 1.47152 * 120.98249 * 173.16363 * 8 6 5 27 27 N 1.34394 * 108.45956 * 359.63761 * 5 4 3 28 28 N 1.28756 * 109.52667 * 0.22307 * 27 5 4 29 29 H 1.08996 * 109.46741 * 60.00055 * 1 2 3 30 30 H 1.08996 * 109.47219 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47151 * 300.00574 * 1 2 3 32 32 H 1.08993 * 109.47079 * 239.99864 * 2 1 3 33 33 H 1.08996 * 109.46741 * 119.99945 * 2 1 3 34 34 H 1.07994 * 126.58194 * 359.96918 * 4 3 2 35 35 H 1.09007 * 109.68593 * 110.82773 * 9 8 6 36 36 H 1.09008 * 109.71255 * 350.30150 * 9 8 6 37 37 H 1.08996 * 109.51404 * 67.62112 * 10 9 8 38 38 H 1.09004 * 109.51450 * 187.76982 * 10 9 8 39 39 H 1.08997 * 109.46742 * 180.02562 * 16 14 12 40 40 H 1.08999 * 109.46942 * 300.00110 * 16 14 12 41 41 H 1.09000 * 109.46821 * 60.00573 * 16 14 12 42 42 H 0.97000 * 119.99738 * 25.00210 * 17 14 12 43 43 H 0.96998 * 120.00517 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.68180 * 249.16702 * 26 8 6 45 45 H 1.08995 * 109.68496 * 9.72069 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8756 1.9306 0.8837 5 6 3.0509 3.2322 0.5081 6 6 3.9086 4.2189 1.1915 7 8 4.4331 3.9374 2.2519 8 7 4.1107 5.4322 0.6407 9 6 3.6121 5.7444 -0.7080 10 6 4.7656 6.3381 -1.5246 11 8 5.3487 7.4216 -0.7968 12 6 5.9310 7.0414 0.4523 13 1 6.6894 6.2769 0.2836 14 6 6.5750 8.2640 1.1092 15 1 6.9364 7.9950 2.1018 16 6 5.5389 9.3833 1.2297 17 7 7.6980 8.7243 0.2888 18 6 8.7210 9.4307 0.8628 19 1 8.7002 9.6481 1.9205 20 6 9.7849 9.8673 0.0854 21 7 10.7680 10.5467 0.6370 22 14 9.8207 9.4919 -1.7442 23 1 9.1501 10.5885 -2.4878 24 1 11.2298 9.3753 -2.1981 25 1 9.1106 8.2131 -2.0010 26 6 4.8371 6.4837 1.3702 27 7 2.3144 3.4603 -0.5927 28 7 1.6887 2.3844 -0.9225 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.3338 1.4371 1.7279 35 1 2.7995 6.4679 -0.6407 36 1 3.2536 4.8335 -1.1875 37 1 5.5193 5.5708 -1.7012 38 1 4.3860 6.7031 -2.4790 39 1 5.9978 10.2543 1.6972 40 1 5.1776 9.6522 0.2371 41 1 4.7033 9.0408 1.8401 42 1 7.7169 8.5287 -0.6611 43 1 11.5116 10.8515 0.0938 44 1 4.1480 7.2816 1.6468 45 1 5.2903 6.0620 2.2673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675614878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:00 Heat of formation + Delta-G solvation = 26.964173 kcal Electronic energy + Delta-G solvation = -27786.129938 eV Core-core repulsion = 23841.364350 eV Total energy + Delta-G solvation = -3944.765588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.34668 -41.29718 -39.56524 -37.28049 -36.46956 -35.70355 -34.36172 -32.52905 -32.30257 -31.31398 -30.21299 -28.57788 -26.49288 -25.63560 -24.85177 -24.58481 -23.05157 -22.67424 -21.34053 -20.62712 -19.76060 -18.69122 -17.79764 -17.53721 -17.29777 -17.01783 -16.64385 -16.36527 -16.27561 -15.84002 -15.66479 -15.48313 -15.15185 -14.91187 -14.56748 -14.32348 -14.28466 -13.95283 -13.76476 -13.59039 -13.33865 -13.20728 -12.95207 -12.91177 -12.51270 -12.40484 -12.32903 -12.12699 -12.05554 -11.79304 -11.67519 -11.58674 -11.35851 -11.26430 -10.96601 -10.90498 -10.41557 -9.61595 -9.30570 -8.00244 -5.32541 0.11307 0.50859 1.07935 1.38651 1.41204 1.48534 1.73834 2.09887 2.49967 2.73105 3.02717 3.31209 3.32146 3.42246 3.69287 3.89592 3.91692 3.94878 3.96739 3.99578 4.10906 4.25524 4.27246 4.28034 4.39334 4.42650 4.58287 4.63179 4.67805 4.74778 4.79299 4.87827 4.94601 5.03659 5.07376 5.22971 5.25300 5.34769 5.46356 5.61183 5.79102 6.16406 6.18661 6.25703 6.74694 6.98772 7.09789 7.86377 8.06558 9.21107 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026955 B = 0.002628 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.534894 B =10652.835396 C =10895.794387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.346 5.346 4 C 0.113 3.887 5 C -0.125 4.125 6 C 0.602 3.398 7 O -0.567 6.567 8 N -0.601 5.601 9 C 0.063 3.937 10 C 0.042 3.958 11 O -0.382 6.382 12 C 0.086 3.914 13 H 0.048 0.952 14 C 0.181 3.819 15 H 0.064 0.936 16 C -0.151 4.151 17 N -0.748 5.748 18 C -0.225 4.225 19 H 0.062 0.938 20 C -0.065 4.065 21 N -0.983 5.983 22 Si 0.953 3.047 23 H -0.280 1.280 24 H -0.295 1.295 25 H -0.258 1.258 26 C 0.092 3.908 27 N -0.221 5.221 28 N -0.084 5.084 29 H 0.056 0.944 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.115 0.885 33 H 0.141 0.859 34 H 0.236 0.764 35 H 0.084 0.916 36 H 0.137 0.863 37 H 0.046 0.954 38 H 0.128 0.872 39 H 0.035 0.965 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.366 0.634 43 H 0.257 0.743 44 H 0.096 0.904 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.261 -26.355 -2.813 36.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.131 5.131 4 C -0.045 4.045 5 C -0.264 4.264 6 C 0.390 3.610 7 O -0.446 6.446 8 N -0.333 5.333 9 C -0.059 4.059 10 C -0.035 4.035 11 O -0.301 6.301 12 C 0.027 3.973 13 H 0.066 0.934 14 C 0.073 3.927 15 H 0.082 0.918 16 C -0.210 4.210 17 N -0.391 5.391 18 C -0.355 4.355 19 H 0.080 0.920 20 C -0.256 4.256 21 N -0.634 5.634 22 Si 0.781 3.219 23 H -0.206 1.206 24 H -0.222 1.222 25 H -0.183 1.183 26 C -0.031 4.031 27 N -0.094 5.094 28 N -0.064 5.064 29 H 0.075 0.925 30 H 0.127 0.873 31 H 0.074 0.926 32 H 0.133 0.867 33 H 0.159 0.841 34 H 0.253 0.747 35 H 0.103 0.897 36 H 0.154 0.846 37 H 0.064 0.936 38 H 0.146 0.854 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.199 0.801 43 H 0.066 0.934 44 H 0.114 0.886 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.730 -25.963 -3.420 36.712 hybrid contribution 1.168 -0.148 -0.076 1.180 sum -24.562 -26.111 -3.495 36.018 Atomic orbital electron populations 1.22082 0.92578 1.04970 1.02686 1.22596 0.97005 0.73881 1.07764 1.50939 1.30258 1.13210 1.18693 1.23840 0.91813 0.92852 0.96015 1.21289 1.08896 0.95950 1.00281 1.17111 0.79403 0.80764 0.83696 1.90790 1.51646 1.78411 1.23709 1.47986 1.55193 1.11937 1.18205 1.23164 0.96791 1.04691 0.81287 1.23201 0.94458 0.89864 0.96020 1.88013 1.75635 1.33962 1.32464 1.22620 0.93410 0.96469 0.84838 0.93353 1.20397 0.87080 0.91566 0.93674 0.91815 1.22207 0.98472 0.98801 1.01540 1.42722 1.22230 1.66533 1.07664 1.19057 0.97534 1.24803 0.94156 0.92028 1.25431 0.96800 1.01019 1.02337 1.69869 1.12149 1.44615 1.36738 0.85431 0.76411 0.78803 0.81259 1.20645 1.22219 1.18318 1.22329 0.94831 0.90343 0.95588 1.74376 1.05767 1.18685 1.10620 1.81904 1.20434 0.91004 1.13015 0.92507 0.87320 0.92588 0.86702 0.84107 0.74734 0.89737 0.84630 0.93552 0.85376 0.94577 0.92851 0.90850 0.80057 0.93431 0.88588 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.44 10.12 71.98 0.73 0.29 16 2 C 0.11 0.20 7.26 86.38 0.63 0.82 16 3 N -0.35 -3.99 3.69 -347.11 -1.28 -5.27 16 4 C 0.11 1.52 11.28 83.85 0.95 2.47 16 5 C -0.12 -2.66 6.69 40.82 0.27 -2.38 16 6 C 0.60 16.12 7.69 86.69 0.67 16.79 16 7 O -0.57 -17.78 16.35 -4.04 -0.07 -17.84 16 8 N -0.60 -15.87 3.02 -821.11 -2.48 -18.35 16 9 C 0.06 1.44 6.23 86.35 0.54 1.97 16 10 C 0.04 1.02 6.98 72.08 0.50 1.52 16 11 O -0.38 -12.28 9.24 -148.98 -1.38 -13.66 16 12 C 0.09 2.86 2.61 30.70 0.08 2.94 16 13 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 14 C 0.18 7.12 2.77 44.99 0.12 7.25 16 15 H 0.06 2.56 8.08 -2.39 -0.02 2.54 16 16 C -0.15 -5.36 9.06 71.98 0.65 -4.71 16 17 N -0.75 -36.60 4.91 -322.94 -1.58 -38.19 16 18 C -0.22 -13.13 10.41 84.03 0.87 -12.26 16 19 H 0.06 3.89 8.06 -2.91 -0.02 3.87 16 20 C -0.06 -3.92 5.50 84.86 0.47 -3.46 16 21 N -0.98 -64.38 13.97 21.65 0.30 -64.08 16 22 Si 0.95 47.76 27.74 68.60 1.90 49.66 16 23 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 24 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 25 H -0.26 -12.00 6.52 99.48 0.65 -11.35 16 26 C 0.09 2.60 5.84 86.36 0.50 3.11 16 27 N -0.22 -4.79 8.83 -50.00 -0.44 -5.24 16 28 N -0.08 -1.57 13.65 37.02 0.51 -1.07 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.05 0.27 8.14 -2.38 -0.02 0.25 16 32 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 33 H 0.14 -0.64 8.08 -2.39 -0.02 -0.66 16 34 H 0.24 1.53 8.06 -2.91 -0.02 1.50 16 35 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.14 2.95 4.32 -14.59 -0.06 2.89 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.13 2.49 8.14 -2.38 -0.02 2.47 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.05 1.93 7.55 -2.39 -0.02 1.92 16 41 H 0.07 2.09 6.42 -2.39 -0.02 2.07 16 42 H 0.37 17.79 5.45 -92.71 -0.51 17.28 16 43 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 44 H 0.10 2.48 6.27 -2.39 -0.01 2.46 16 45 H 0.10 2.88 7.06 -2.39 -0.02 2.86 16 Total: -1.00 -80.25 365.51 2.86 -77.38 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.40 Total: 22.30 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 6.98 Total: 14.36 kcal Atomic # 7 Polarization: -127.22 SS G_CDS: -4.98 Total: -132.20 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -1.44 Total: -31.50 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 1.90 Total: 49.66 kcal Total: -80.25 2.86 -77.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675614878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.349 kcal (2) G-P(sol) polarization free energy of solvation -80.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds