Wall clock time and date at job start Fri Apr 10 2020 18:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.86993 * 2 1 4 4 C 1.54322 * 109.88363 * 238.98683 * 2 1 3 5 5 H 1.09002 * 110.71590 * 336.77737 * 4 2 1 6 6 N 1.46506 * 110.71932 * 99.86876 * 4 2 1 7 7 C 1.36937 * 119.99708 * 204.99786 * 6 4 2 8 8 H 1.07996 * 120.00283 * 0.02562 * 7 6 4 9 9 C 1.38815 * 119.99959 * 179.97438 * 7 6 4 10 10 N 1.31622 * 119.99483 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00333 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46651 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46828 * 120.00285 * 11 9 7 14 14 H 1.48497 * 109.47433 * 240.00454 * 11 9 7 15 15 C 1.55149 * 102.94288 * 218.23277 * 4 2 1 16 16 C 1.54913 * 101.58081 * 35.50266 * 15 4 2 17 17 N 1.47022 * 110.01189 * 121.09820 * 2 1 3 18 18 C 1.34768 * 125.65028 * 298.46831 * 17 2 1 19 19 O 1.21281 * 120.00424 * 359.97438 * 18 17 2 20 20 C 1.50701 * 119.99967 * 179.97438 * 18 17 2 21 21 O 1.42902 * 109.47096 * 180.02562 * 20 18 17 22 22 C 1.42901 * 114.00213 * 180.02562 * 21 20 18 23 23 C 1.50700 * 109.47281 * 180.02562 * 22 21 20 24 24 N 1.30515 * 126.35051 * 90.02293 * 23 22 21 25 25 N 1.28603 * 109.67385 * 179.97438 * 24 23 22 26 26 C 1.30522 * 109.67068 * 0.02562 * 25 24 23 27 27 N 1.35496 * 126.33885 * 269.70911 * 23 22 21 28 28 C 1.46501 * 126.98524 * 0.03586 * 27 23 22 29 29 H 1.09000 * 109.47232 * 181.01638 * 1 2 3 30 30 H 1.09004 * 109.47433 * 301.01384 * 1 2 3 31 31 H 1.09001 * 109.47028 * 61.00952 * 1 2 3 32 32 H 0.97000 * 120.00117 * 25.00192 * 6 4 2 33 33 H 0.97000 * 119.99481 * 179.97438 * 10 9 7 34 34 H 1.09005 * 111.00403 * 153.57461 * 15 4 2 35 35 H 1.08993 * 111.00882 * 277.42778 * 15 4 2 36 36 H 1.09006 * 110.36719 * 204.14961 * 16 15 4 37 37 H 1.08998 * 110.36705 * 81.82857 * 16 15 4 38 38 H 1.08998 * 109.47360 * 299.99914 * 20 18 17 39 39 H 1.08997 * 109.47426 * 60.00201 * 20 18 17 40 40 H 1.09003 * 109.46866 * 299.99454 * 22 21 20 41 41 H 1.08995 * 109.46992 * 59.99300 * 22 21 20 42 42 H 1.07995 * 126.34232 * 180.02562 * 26 25 24 43 43 H 1.08998 * 109.46792 * 90.00208 * 28 27 23 44 44 H 1.08997 * 109.47036 * 209.99945 * 28 27 23 45 45 H 1.08994 * 109.46866 * 329.99995 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0548 -0.7477 -1.2438 5 1 1.3049 -1.4433 -1.6205 6 7 2.4520 0.1993 -2.2886 7 6 2.4539 -0.1906 -3.6013 8 1 2.1623 -1.1961 -3.8664 9 6 2.8297 0.7068 -4.5914 10 7 3.1846 1.9324 -4.2683 11 14 2.8316 0.1752 -6.3821 12 1 2.3947 -1.2408 -6.4785 13 1 1.8986 1.0344 -7.1545 14 1 4.2025 0.3096 -6.9369 15 6 3.2900 -1.5099 -0.6955 16 6 2.8195 -1.8769 0.7341 17 7 2.0331 -0.7135 1.1829 18 6 1.8114 -0.3627 2.4651 19 8 1.1458 0.6189 2.7189 20 6 2.3906 -1.1900 3.5836 21 8 2.0183 -0.6198 4.8400 22 6 2.5198 -1.3319 5.9729 23 6 2.0683 -0.6467 7.2370 24 7 0.9689 -0.8883 7.8975 25 7 0.9048 -0.1202 8.9271 26 6 1.9602 0.6465 8.9697 27 7 2.7316 0.3302 7.9015 28 6 4.0193 0.9263 7.5371 29 1 -0.3634 -1.0275 0.0182 30 1 -0.3634 0.5295 0.8808 31 1 -0.3633 0.4981 -0.8989 32 1 2.7136 1.1025 -2.0506 33 1 3.4476 2.5594 -4.9602 34 1 3.4887 -2.4061 -1.2835 35 1 4.1664 -0.8627 -0.6643 36 1 3.6779 -2.0298 1.3884 37 1 2.1956 -2.7703 0.7105 38 1 2.0065 -2.2080 3.5191 39 1 3.4772 -1.2056 3.4991 40 1 2.1390 -2.3531 5.9578 41 1 3.6090 -1.3497 5.9378 42 1 2.1804 1.3912 9.7202 43 1 3.8511 1.7854 6.8878 44 1 4.5386 1.2490 8.4394 45 1 4.6261 0.1879 7.0131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676680815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:27 Heat of formation + Delta-G solvation = 29.455715 kcal Electronic energy + Delta-G solvation = -26976.702225 eV Core-core repulsion = 23032.044678 eV Total energy + Delta-G solvation = -3944.657547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.45121 -40.12298 -38.38681 -37.09513 -35.42722 -34.19243 -32.16633 -31.69044 -30.96391 -29.57283 -28.34518 -27.89784 -26.36390 -25.26211 -23.10346 -22.75024 -22.51253 -21.37668 -20.27468 -19.00758 -17.80302 -17.44786 -17.23589 -16.82052 -16.74801 -16.23232 -15.85845 -15.48515 -15.10505 -14.70871 -14.52817 -13.90575 -13.85951 -13.64668 -13.46409 -13.41748 -13.02078 -12.83948 -12.58306 -12.22323 -12.11735 -11.89595 -11.82544 -11.66924 -11.20923 -11.08124 -10.89291 -10.73014 -10.64935 -10.58015 -10.28460 -10.18809 -10.06361 -9.83090 -9.73463 -9.53025 -9.00277 -8.48065 -7.08829 -5.86528 -3.17202 1.27566 2.04304 2.41030 2.67536 2.80947 3.37481 3.43188 3.45660 3.55136 4.03550 4.12890 4.18190 4.37042 4.49129 4.50643 4.55750 4.72259 4.78920 4.88649 4.90301 4.95469 5.14525 5.17848 5.28039 5.43088 5.45764 5.50473 5.61688 5.72614 5.74485 5.88464 6.03907 6.07372 6.23879 6.37945 6.40870 6.48318 6.52827 6.60386 6.73143 6.85540 7.61511 7.65733 8.26753 8.30957 8.37999 9.42335 9.96307 10.30867 11.35604 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.032048 B = 0.002079 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.490002 B =13466.552909 C =13530.311486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 H 0.077 0.923 4 C 0.176 3.824 5 H 0.069 0.931 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.073 0.927 9 C -0.011 4.011 10 N -0.929 5.929 11 Si 0.909 3.091 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.156 4.156 16 C 0.095 3.905 17 N -0.609 5.609 18 C 0.527 3.473 19 O -0.521 6.521 20 C 0.050 3.950 21 O -0.356 6.356 22 C 0.150 3.850 23 C 0.175 3.825 24 N -0.271 5.271 25 N -0.297 5.297 26 C 0.155 3.845 27 N -0.468 5.468 28 C 0.070 3.930 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.221 0.779 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.674 -7.531 23.025 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.096 0.904 4 C 0.064 3.936 5 H 0.087 0.913 6 N -0.354 5.354 7 C -0.375 4.375 8 H 0.091 0.909 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.197 4.197 16 C -0.028 4.028 17 N -0.345 5.345 18 C 0.313 3.687 19 O -0.396 6.396 20 C -0.030 4.030 21 O -0.273 6.273 22 C 0.071 3.929 23 C -0.092 4.092 24 N -0.113 5.113 25 N -0.136 5.136 26 C -0.132 4.132 27 N -0.159 5.159 28 C -0.073 4.073 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.238 0.762 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.867 -7.469 23.431 24.895 hybrid contribution 1.738 0.531 -1.238 2.199 sum 5.605 -6.938 22.193 23.918 Atomic orbital electron populations 1.22047 0.94780 1.01662 1.02819 1.21982 0.94536 0.96912 0.84123 0.90447 1.21249 0.93539 0.91636 0.87135 0.91324 1.42363 1.79363 1.11762 1.01913 1.19256 1.38500 0.96910 0.82841 0.90882 1.24783 1.01900 0.95852 0.98174 1.69678 1.51169 1.04554 1.32273 0.86103 0.77212 0.77655 0.85087 1.20463 1.21790 1.21832 1.23575 1.01457 1.01824 0.92868 1.22442 0.94463 0.88419 0.97455 1.48495 1.52339 1.29058 1.04587 1.19644 0.81362 0.85545 0.82119 1.90736 1.38888 1.27104 1.82857 1.22246 0.99991 0.97237 0.83499 1.88089 1.75344 1.51885 1.11967 1.20488 0.97648 0.94693 0.80089 1.24258 0.92540 0.94039 0.98353 1.74278 1.14661 1.19953 1.02443 1.74303 1.19071 1.05848 1.14428 1.26514 0.90059 1.03150 0.93486 1.46192 1.19572 1.29117 1.21057 1.22188 0.81511 1.00269 1.03282 0.93045 0.91994 0.91030 0.77976 0.93392 0.90427 0.90620 0.91426 0.91429 0.89755 0.90066 0.89089 0.91073 0.76217 0.89258 0.88685 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.10 37.16 0.34 -2.27 16 2 C 0.13 2.21 3.20 -66.95 -0.21 1.99 16 3 H 0.08 1.52 7.72 -51.93 -0.40 1.12 16 4 C 0.18 3.22 3.14 -66.10 -0.21 3.02 16 5 H 0.07 1.26 7.80 -51.93 -0.40 0.85 16 6 N -0.71 -16.82 5.22 -51.65 -0.27 -17.08 16 7 C -0.24 -6.39 9.96 -15.06 -0.15 -6.54 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 11 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 C -0.16 -2.33 6.77 -24.58 -0.17 -2.49 16 16 C 0.10 1.09 6.69 -2.53 -0.02 1.07 16 17 N -0.61 -8.84 3.07 -163.02 -0.50 -9.34 16 18 C 0.53 7.95 7.72 -10.99 -0.08 7.87 16 19 O -0.52 -10.27 15.55 -14.36 -0.22 -10.49 16 20 C 0.05 0.51 5.42 36.01 0.20 0.70 16 21 O -0.36 -4.36 9.86 -55.14 -0.54 -4.91 16 22 C 0.15 1.26 6.29 36.01 0.23 1.48 16 23 C 0.18 1.93 7.66 -154.99 -1.19 0.74 16 24 N -0.27 -3.86 12.21 32.80 0.40 -3.46 16 25 N -0.30 -3.92 12.21 29.69 0.36 -3.56 16 26 C 0.16 1.35 12.74 -89.94 -1.15 0.20 16 27 N -0.47 -3.83 3.15 -122.69 -0.39 -4.22 16 28 C 0.07 0.25 11.04 59.85 0.66 0.91 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.10 6.91 -51.93 -0.36 0.75 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.39 9.87 7.56 -40.82 -0.31 9.56 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.07 0.58 7.48 -51.93 -0.39 0.19 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.34 7.21 -51.93 -0.37 -0.04 16 42 H 0.22 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 45 H 0.09 0.20 7.19 -51.93 -0.37 -0.17 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -37.61 377.64 -8.41 -46.01 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.79 Total: 4.97 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -1.85 Total: 6.31 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: 0.33 Total: -64.13 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.77 Total: -15.40 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.61 -8.41 -46.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676680815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.469 kcal (2) G-P(sol) polarization free energy of solvation -37.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds