Wall clock time and date at job start Fri Apr 10 2020 18:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46501 * 119.99948 * 2 1 4 4 C 1.38399 * 119.99965 * 179.97438 * 2 1 3 5 5 C 1.39888 * 119.99918 * 0.31317 * 4 2 1 6 6 N 1.31457 * 120.01710 * 180.02562 * 5 4 2 7 7 C 1.33278 * 120.00643 * 359.97438 * 6 5 4 8 8 C 1.47820 * 120.00106 * 180.02562 * 7 6 5 9 9 O 1.21561 * 119.99945 * 187.16692 * 8 7 6 10 10 N 1.34770 * 120.00007 * 7.16238 * 8 7 6 11 11 C 1.46499 * 120.00227 * 357.23623 * 10 8 7 12 12 C 1.46504 * 120.00137 * 177.23207 * 10 8 7 13 13 C 1.53001 * 109.47076 * 90.00197 * 12 10 8 14 14 H 1.08997 * 109.47236 * 60.00285 * 13 12 10 15 15 O 1.42902 * 109.46923 * 300.00185 * 13 12 10 16 16 C 1.52997 * 109.46897 * 180.02562 * 13 12 10 17 17 N 1.46505 * 109.47168 * 184.99728 * 16 13 12 18 18 C 1.36936 * 120.00197 * 179.72425 * 17 16 13 19 19 H 1.07997 * 120.00089 * 0.27507 * 18 17 16 20 20 C 1.38807 * 119.99774 * 180.28161 * 18 17 16 21 21 N 1.31624 * 120.00385 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99858 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47331 * 89.99772 * 22 20 18 24 24 H 1.48504 * 109.46948 * 209.99668 * 22 20 18 25 25 H 1.48504 * 109.47076 * 329.99261 * 22 20 18 26 26 C 1.39407 * 119.99584 * 0.27476 * 7 6 5 27 27 N 1.32051 * 119.98833 * 359.43660 * 26 7 6 28 28 H 1.09004 * 109.47271 * 185.29001 * 1 2 3 29 29 H 1.09003 * 109.47235 * 305.29233 * 1 2 3 30 30 H 1.09004 * 109.47743 * 65.28780 * 1 2 3 31 31 H 1.08995 * 109.47123 * 269.99742 * 3 2 1 32 32 H 1.09003 * 109.46949 * 30.00097 * 3 2 1 33 33 H 1.09007 * 109.46991 * 149.99705 * 3 2 1 34 34 H 1.08000 * 119.99332 * 0.04068 * 5 4 2 35 35 H 1.09001 * 109.46862 * 276.09455 * 11 10 8 36 36 H 1.08996 * 109.47271 * 36.09409 * 11 10 8 37 37 H 1.08997 * 109.47323 * 156.09185 * 11 10 8 38 38 H 1.08997 * 109.46856 * 330.00249 * 12 10 8 39 39 H 1.08996 * 109.47489 * 210.00340 * 12 10 8 40 40 H 0.96698 * 114.00040 * 299.99688 * 15 13 12 41 41 H 1.08999 * 109.47630 * 65.00224 * 16 13 12 42 42 H 1.09000 * 109.47549 * 305.00032 * 16 13 12 43 43 H 0.97006 * 119.99365 * 0.02562 * 17 16 13 44 44 H 0.96996 * 119.99853 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.00667 * 179.72821 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1569 -1.1986 0.0005 5 6 1.4575 -2.4100 -0.0055 6 7 2.1144 -3.5487 -0.0045 7 6 3.4472 -3.5493 0.0018 8 6 4.1857 -4.8297 0.0023 9 8 5.3936 -4.8346 0.1394 10 7 3.5200 -5.9917 -0.1490 11 6 2.0587 -5.9905 -0.2533 12 6 4.2576 -7.2561 -0.2093 13 6 4.4120 -7.8243 1.2029 14 1 3.4263 -7.9989 1.6341 15 8 5.1291 -6.8927 2.0154 16 6 5.1828 -9.1444 1.1400 17 7 5.2275 -9.7479 2.4742 18 6 5.8645 -10.9453 2.6631 19 1 6.3377 -11.4426 1.8294 20 6 5.9017 -11.5199 3.9261 21 7 5.3252 -10.9136 4.9423 22 14 6.7712 -13.1529 4.1840 23 1 8.1952 -12.9070 4.5258 24 1 6.1165 -13.8926 5.2929 25 1 6.6929 -13.9575 2.9382 26 6 4.1446 -2.3423 0.0131 27 7 3.4846 -1.1985 0.0063 28 1 -0.3634 -1.0233 0.0947 29 1 -0.3634 0.5937 0.8388 30 1 -0.3635 0.4296 -0.9335 31 1 2.3791 1.5834 -1.0276 32 1 1.6083 2.0284 0.5139 33 1 3.1499 1.1384 0.5139 34 1 0.3775 -2.4099 -0.0113 35 1 1.6232 -5.9722 0.7458 36 1 1.7347 -5.1095 -0.8071 37 1 1.7310 -6.8890 -0.7761 38 1 5.2433 -7.0814 -0.6404 39 1 3.7107 -7.9666 -0.8290 40 1 6.0170 -6.6898 1.6908 41 1 6.1986 -8.9559 0.7924 42 1 4.6832 -9.8244 0.4501 43 1 4.8021 -9.3013 3.2229 44 1 5.3510 -11.3154 5.8247 45 1 5.2246 -2.3425 0.0226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677080290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:39 Heat of formation + Delta-G solvation = -8.544369 kcal Electronic energy + Delta-G solvation = -27102.958670 eV Core-core repulsion = 23156.653316 eV Total energy + Delta-G solvation = -3946.305354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.35388 -40.68673 -38.69502 -37.90136 -36.52597 -35.88311 -35.05476 -33.20673 -32.13078 -30.74069 -29.38747 -27.92171 -27.75410 -26.39024 -25.25845 -24.63744 -23.30956 -22.60751 -21.07719 -19.22979 -19.08707 -18.57774 -18.06253 -17.70229 -17.17358 -16.75904 -16.52270 -16.40602 -16.13034 -16.01792 -15.46218 -15.39400 -15.30727 -14.80913 -14.71929 -14.23788 -14.10456 -13.86493 -13.70948 -13.65529 -13.39117 -13.14116 -12.96664 -12.85696 -12.77636 -12.64918 -12.40093 -12.16090 -12.02335 -11.81529 -11.77009 -11.31088 -11.14912 -11.04529 -10.96417 -10.00371 -9.53010 -9.01471 -8.76751 -7.94353 -5.24662 -0.41705 0.08127 1.46193 1.49606 1.57820 1.69982 1.75112 2.02225 2.55949 2.78173 3.04062 3.23943 3.36065 3.37225 3.52403 3.72964 3.81036 4.03353 4.08382 4.20891 4.22396 4.35382 4.40724 4.52678 4.53066 4.58145 4.58484 4.73065 4.75198 4.84854 4.92902 4.93461 4.94964 5.03070 5.25632 5.28258 5.46874 5.59819 5.65212 5.96191 6.26122 6.29442 6.37873 6.75691 6.83543 7.14984 7.32089 8.08312 8.31534 9.29286 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030640 B = 0.002142 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.623554 B =13066.338632 C =13081.231692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.592 5.592 3 C 0.088 3.912 4 C 0.367 3.633 5 C -0.006 4.006 6 N -0.372 5.372 7 C -0.072 4.072 8 C 0.577 3.423 9 O -0.568 6.568 10 N -0.592 5.592 11 C 0.076 3.924 12 C 0.094 3.906 13 C 0.096 3.904 14 H 0.085 0.915 15 O -0.567 6.567 16 C 0.125 3.875 17 N -0.742 5.742 18 C -0.247 4.247 19 H 0.079 0.921 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.980 3.020 23 H -0.288 1.288 24 H -0.294 1.294 25 H -0.265 1.265 26 C 0.170 3.830 27 N -0.528 5.528 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.210 0.790 35 H 0.046 0.954 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.118 0.882 40 H 0.377 0.623 41 H 0.024 0.976 42 H 0.043 0.957 43 H 0.373 0.627 44 H 0.251 0.749 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.170 26.235 -16.872 34.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.302 5.302 3 C -0.054 4.054 4 C 0.125 3.875 5 C -0.180 4.180 6 N -0.088 5.088 7 C -0.210 4.210 8 C 0.366 3.634 9 O -0.447 6.447 10 N -0.322 5.322 11 C -0.066 4.066 12 C -0.029 4.029 13 C 0.036 3.964 14 H 0.103 0.897 15 O -0.373 6.373 16 C -0.002 4.002 17 N -0.385 5.385 18 C -0.379 4.379 19 H 0.097 0.903 20 C -0.273 4.273 21 N -0.622 5.622 22 Si 0.808 3.192 23 H -0.215 1.215 24 H -0.221 1.221 25 H -0.190 1.190 26 C 0.008 3.992 27 N -0.251 5.251 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.226 0.774 35 H 0.064 0.936 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.225 0.775 41 H 0.042 0.958 42 H 0.061 0.939 43 H 0.204 0.796 44 H 0.059 0.941 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -15.080 26.221 -16.548 34.479 hybrid contribution 1.049 -0.768 0.604 1.433 sum -14.031 25.454 -15.944 33.151 Atomic orbital electron populations 1.22254 0.75165 1.05136 1.04022 1.46637 1.07236 1.02491 1.73860 1.21805 0.97575 0.83661 1.02385 1.19991 0.89571 0.88988 0.88973 1.24012 1.02977 0.85938 1.05074 1.68603 1.07025 1.28375 1.04832 1.21375 0.91330 0.94766 1.13549 1.17801 0.86143 0.83388 0.76113 1.90714 1.14807 1.87247 1.51926 1.47610 1.09027 1.05159 1.70432 1.22488 0.76835 1.04850 1.02392 1.22184 0.99051 0.85326 0.96360 1.22409 0.95232 0.87262 0.91527 0.89678 1.86518 1.32368 1.64087 1.54361 1.21445 0.97660 0.93442 0.87703 1.42489 1.66471 1.23337 1.06161 1.19695 1.26497 0.97372 0.94289 0.90275 1.25691 1.02883 1.03112 0.95654 1.69868 1.50857 1.41419 1.00099 0.85048 0.77548 0.79121 0.77463 1.21531 1.22103 1.18976 1.23426 1.01772 0.86049 0.87910 1.68149 1.07309 1.29104 1.20540 0.88750 0.89634 0.89955 0.92282 0.88583 0.91824 0.77357 0.93556 0.86996 0.90067 0.89797 0.86423 0.77525 0.95788 0.93940 0.79556 0.94050 0.80552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.15 10.60 127.77 1.35 1.50 16 2 N -0.59 -6.04 3.37 -753.48 -2.54 -8.58 16 3 C 0.09 0.75 10.50 127.77 1.34 2.09 16 4 C 0.37 6.17 7.38 133.34 0.98 7.15 16 5 C -0.01 -0.09 10.48 85.15 0.89 0.80 16 6 N -0.37 -7.85 6.17 -183.79 -1.13 -8.99 16 7 C -0.07 -1.88 6.61 41.74 0.28 -1.60 16 8 C 0.58 17.71 7.20 86.78 0.62 18.33 16 9 O -0.57 -20.30 14.56 7.36 0.11 -20.19 16 10 N -0.59 -16.06 2.83 -850.24 -2.40 -18.46 16 11 C 0.08 1.58 9.39 127.77 1.20 2.78 16 12 C 0.09 2.59 5.18 86.38 0.45 3.03 16 13 C 0.10 3.45 3.27 30.59 0.10 3.55 16 14 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 15 O -0.57 -23.53 12.03 -137.71 -1.66 -25.19 16 16 C 0.12 5.17 5.90 86.38 0.51 5.68 16 17 N -0.74 -40.37 5.55 -343.45 -1.91 -42.27 16 18 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 19 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 20 C -0.08 -4.90 5.50 84.86 0.47 -4.44 16 21 N -0.97 -62.76 13.06 21.65 0.28 -62.48 16 22 Si 0.98 47.80 29.55 68.60 2.03 49.83 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 24 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 C 0.17 4.16 10.76 84.94 0.91 5.07 16 27 N -0.53 -11.55 9.25 -191.74 -1.77 -13.32 16 28 H 0.09 -0.02 5.28 -2.39 -0.01 -0.03 16 29 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.08 -0.05 8.14 -2.39 -0.02 -0.06 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.10 0.31 8.07 -2.39 -0.02 0.29 16 33 H 0.06 0.81 7.37 -2.38 -0.02 0.80 16 34 H 0.21 1.34 5.72 -2.91 -0.02 1.32 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.11 2.13 5.20 -3.47 -0.02 2.11 16 37 H 0.08 1.32 7.83 -2.39 -0.02 1.30 16 38 H 0.08 2.39 7.46 -2.39 -0.02 2.37 16 39 H 0.12 2.49 7.85 -2.39 -0.02 2.47 16 40 H 0.38 14.77 8.36 -74.06 -0.62 14.15 16 41 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.37 22.25 7.67 -92.70 -0.71 21.54 16 44 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 45 H 0.18 4.24 7.65 -2.91 -0.02 4.22 16 Total: -1.00 -81.24 372.04 0.65 -80.59 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: -0.30 Total: 38.70 kcal Atomic # 6 Polarization: 20.41 SS G_CDS: 9.95 Total: 30.36 kcal Atomic # 7 Polarization: -144.62 SS G_CDS: -9.48 Total: -154.10 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.55 Total: -45.38 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -81.24 0.65 -80.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677080290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.044 kcal (2) G-P(sol) polarization free energy of solvation -81.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds