Wall clock time and date at job start Fri Apr 10 2020 18:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.99962 * 2 1 4 4 C 1.54322 * 109.88183 * 238.90501 * 2 1 3 5 5 H 1.09006 * 110.71959 * 336.74843 * 4 2 1 6 6 N 1.46498 * 110.72056 * 99.84806 * 4 2 1 7 7 C 1.34773 * 119.99897 * 205.00000 * 6 4 2 8 8 O 1.21286 * 119.99827 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00211 * 180.02562 * 7 6 4 10 10 O 1.42897 * 109.47624 * 180.02562 * 9 7 6 11 11 C 1.42893 * 114.00366 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47438 * 179.97438 * 11 10 9 13 13 N 1.30520 * 126.34842 * 269.69193 * 12 11 10 14 14 N 1.28598 * 109.67644 * 179.82186 * 13 12 11 15 15 C 1.30520 * 109.66507 * 0.44566 * 14 13 12 16 16 N 1.35491 * 126.34429 * 90.00002 * 12 11 10 17 17 C 1.46494 * 126.98193 * 359.97438 * 16 12 11 18 18 C 1.55282 * 103.00430 * 218.47057 * 4 2 1 19 19 C 1.54905 * 101.53029 * 35.35966 * 18 4 2 20 20 N 1.47023 * 109.88116 * 121.09746 * 2 1 3 21 21 C 1.36943 * 125.64628 * 298.37310 * 20 2 1 22 22 H 1.07999 * 119.99997 * 0.02562 * 21 20 2 23 23 C 1.38816 * 119.99832 * 180.02562 * 21 20 2 24 24 N 1.31616 * 120.00113 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99740 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47746 * 60.00204 * 25 23 21 27 27 H 1.48506 * 109.47230 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47299 * 299.99977 * 25 23 21 29 29 H 1.09002 * 109.47094 * 300.35691 * 1 2 3 30 30 H 1.08994 * 109.47380 * 60.35827 * 1 2 3 31 31 H 1.08996 * 109.47109 * 180.36020 * 1 2 3 32 32 H 0.96997 * 120.00355 * 25.00009 * 6 4 2 33 33 H 1.09011 * 109.46606 * 299.99832 * 9 7 6 34 34 H 1.08995 * 109.47398 * 59.99178 * 9 7 6 35 35 H 1.08993 * 109.47430 * 299.99880 * 11 10 9 36 36 H 1.09006 * 109.46847 * 59.99525 * 11 10 9 37 37 H 1.08006 * 126.34122 * 179.72748 * 15 14 13 38 38 H 1.09006 * 109.46759 * 90.00394 * 17 16 12 39 39 H 1.08995 * 109.47653 * 210.00038 * 17 16 12 40 40 H 1.08995 * 109.47351 * 330.00570 * 17 16 12 41 41 H 1.09001 * 110.95548 * 277.33125 * 18 4 2 42 42 H 1.08996 * 111.09853 * 153.45188 * 18 4 2 43 43 H 1.09002 * 110.36692 * 204.23391 * 19 18 4 44 44 H 1.08995 * 110.36664 * 82.02192 * 19 18 4 45 45 H 0.97000 * 120.00077 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3051 -1.4460 -1.6182 6 7 2.4515 0.1960 -2.2891 7 6 2.4532 -0.1898 -3.5804 8 8 2.1268 -1.3199 -3.8761 9 6 2.8618 0.7825 -4.6568 10 8 2.7814 0.1429 -5.9321 11 6 3.1495 0.9829 -7.0279 12 6 3.0291 0.2100 -8.3160 13 7 3.9678 -0.4960 -8.8851 14 7 3.5172 -1.0223 -9.9685 15 6 2.2733 -0.6682 -10.1445 16 7 1.9281 0.1240 -9.1009 17 6 0.6282 0.7581 -8.8681 18 6 3.2876 -1.5172 -0.6930 19 6 2.8145 -1.8794 0.7368 20 7 2.0300 -0.7141 1.1839 21 6 1.8041 -0.3562 2.4863 22 1 1.2126 0.5191 2.7109 23 6 2.3354 -1.1184 3.5177 24 7 3.0566 -2.1847 3.2439 25 14 2.0266 -0.6306 5.2942 26 1 0.5659 -0.6335 5.5617 27 1 2.6976 -1.5997 6.1975 28 1 2.5713 0.7296 5.5359 29 1 -0.3633 0.5194 0.8868 30 1 -0.3634 0.5082 -0.8931 31 1 -0.3633 -1.0276 0.0065 32 1 2.7129 1.0996 -2.0526 33 1 2.1944 1.6443 -4.6403 34 1 3.8853 1.1123 -4.4791 35 1 2.4883 1.8487 -7.0602 36 1 4.1793 1.3169 -6.8998 37 1 1.6371 -0.9537 -10.9693 38 1 0.6154 1.7428 -9.3355 39 1 -0.1597 0.1409 -9.2997 40 1 0.4616 0.8626 -7.7960 41 1 4.1663 -0.8728 -0.6624 42 1 3.4839 -2.4151 -1.2789 43 1 3.6716 -2.0338 1.3923 44 1 2.1891 -2.7718 0.7148 45 1 3.4282 -2.7171 3.9646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689327149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:58 Heat of formation + Delta-G solvation = 38.829814 kcal Electronic energy + Delta-G solvation = -26906.107696 eV Core-core repulsion = 22961.856641 eV Total energy + Delta-G solvation = -3944.251055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.45622 -39.87671 -38.27598 -37.26779 -35.43356 -34.06767 -32.21101 -31.91925 -30.42383 -29.30493 -28.30918 -27.93096 -26.49683 -24.42403 -24.00700 -22.75593 -21.41055 -20.77991 -20.21549 -19.69494 -17.83815 -17.42624 -16.96962 -16.81065 -16.66924 -16.33822 -15.68829 -15.45798 -15.06627 -14.69230 -14.38922 -13.96713 -13.89038 -13.83852 -13.45117 -13.23552 -12.86667 -12.63134 -12.32206 -12.16550 -11.93811 -11.82923 -11.59846 -11.17662 -10.87939 -10.85810 -10.73402 -10.60221 -10.58914 -10.44040 -10.21227 -10.14817 -9.79564 -9.76919 -9.63269 -9.53538 -8.72383 -8.64594 -6.90646 -5.67728 -3.11145 1.26664 2.03721 2.42205 2.67375 2.89596 3.37853 3.42171 3.43954 3.62600 4.05313 4.17417 4.20993 4.40050 4.45621 4.51717 4.61519 4.75395 4.80707 4.85280 4.91943 5.15063 5.26243 5.39128 5.44536 5.51389 5.59298 5.72508 5.78947 6.08343 6.21127 6.26621 6.30773 6.38141 6.47745 6.50356 6.58778 6.69879 6.82778 7.07532 7.49398 7.59234 7.64397 7.83175 8.30960 8.34916 8.37904 9.17799 9.78755 10.42445 11.35373 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.036652 B = 0.002039 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.754772 B =13731.611840 C =14050.159057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.036 0.964 4 C 0.136 3.864 5 H 0.094 0.906 6 N -0.713 5.713 7 C 0.512 3.488 8 O -0.520 6.520 9 C 0.045 3.955 10 O -0.356 6.356 11 C 0.149 3.851 12 C 0.175 3.825 13 N -0.270 5.270 14 N -0.296 5.296 15 C 0.155 3.845 16 N -0.469 5.469 17 C 0.069 3.931 18 C -0.153 4.153 19 C 0.152 3.848 20 N -0.595 5.595 21 C -0.222 4.222 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.920 5.920 25 Si 0.915 3.085 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.398 0.602 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.221 0.779 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.110 0.890 44 H 0.015 0.985 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.606 11.860 -23.191 26.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.032 3.968 5 H 0.112 0.888 6 N -0.366 5.366 7 C 0.296 3.704 8 O -0.395 6.395 9 C -0.035 4.035 10 O -0.273 6.273 11 C 0.070 3.930 12 C -0.092 4.092 13 N -0.113 5.113 14 N -0.136 5.136 15 C -0.132 4.132 16 N -0.160 5.160 17 C -0.074 4.074 18 C -0.193 4.193 19 C 0.027 3.973 20 N -0.320 5.320 21 C -0.350 4.350 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.568 5.568 25 Si 0.745 3.255 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.233 0.767 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.238 0.762 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.127 0.873 44 H 0.033 0.967 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.540 10.104 -23.425 25.756 hybrid contribution -1.483 1.486 1.190 2.414 sum -5.023 11.590 -22.235 25.573 Atomic orbital electron populations 1.22242 0.97908 1.01430 0.99892 1.20988 0.92569 0.94774 0.86924 0.94645 1.22199 0.97811 0.90714 0.86109 0.88823 1.45931 1.68684 1.16328 1.05621 1.20037 0.78582 0.88567 0.83250 1.90753 1.46472 1.20212 1.82087 1.22290 1.02530 0.95149 0.83548 1.88096 1.88879 1.37482 1.12812 1.20498 1.02077 0.90005 0.80397 1.24274 0.84397 1.03595 0.96930 1.74285 1.24823 1.08806 1.03347 1.74308 1.07648 1.20131 1.11519 1.26515 0.96332 0.95662 0.94710 1.46183 1.12753 1.37907 1.19153 1.22190 0.81367 0.98891 1.04908 1.23426 0.96717 0.99390 0.99784 1.21954 0.97428 0.88385 0.89527 1.44483 1.59251 1.28255 1.00044 1.18963 1.27309 1.08268 0.80490 0.90509 1.24801 1.00319 0.97372 0.98089 1.69781 1.38864 1.17842 1.30348 0.86155 0.77636 0.77418 0.84264 1.21232 1.21577 1.21182 0.92671 0.94412 0.92931 0.76743 0.90013 0.89572 0.91029 0.89027 0.76225 0.89718 0.88582 0.88636 0.91916 0.91915 0.87270 0.96738 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.14 37.16 0.34 -2.44 16 2 C 0.16 3.01 3.48 -66.95 -0.23 2.77 16 3 H 0.04 0.65 7.72 -51.93 -0.40 0.25 16 4 C 0.14 2.40 2.83 -66.03 -0.19 2.22 16 5 H 0.09 1.82 7.26 -51.93 -0.38 1.44 16 6 N -0.71 -9.64 5.19 -51.97 -0.27 -9.91 16 7 C 0.51 7.24 7.91 -10.99 -0.09 7.15 16 8 O -0.52 -10.08 16.14 -14.36 -0.23 -10.31 16 9 C 0.04 0.41 6.42 36.00 0.23 0.64 16 10 O -0.36 -4.17 9.86 -55.14 -0.54 -4.71 16 11 C 0.15 1.20 6.11 36.00 0.22 1.42 16 12 C 0.18 1.90 7.66 -154.99 -1.19 0.71 16 13 N -0.27 -3.84 12.21 32.79 0.40 -3.44 16 14 N -0.30 -3.91 12.21 29.69 0.36 -3.55 16 15 C 0.16 1.32 12.74 -89.95 -1.15 0.18 16 16 N -0.47 -3.72 3.15 -122.69 -0.39 -4.11 16 17 C 0.07 0.22 10.90 59.84 0.65 0.87 16 18 C -0.15 -3.01 6.79 -24.52 -0.17 -3.18 16 19 C 0.15 3.67 5.88 -2.53 -0.01 3.66 16 20 N -0.60 -14.53 3.13 -162.58 -0.51 -15.04 16 21 C -0.22 -5.93 9.87 -15.06 -0.15 -6.08 16 22 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 23 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 24 N -0.92 -26.41 10.09 55.49 0.56 -25.85 16 25 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 H 0.05 1.02 8.02 -51.93 -0.42 0.60 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.40 4.11 8.37 -40.82 -0.34 3.77 16 33 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.31 7.86 -51.93 -0.41 -0.10 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.22 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 40 H 0.09 0.33 7.81 -51.93 -0.41 -0.08 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.11 2.95 5.87 -51.93 -0.30 2.65 16 44 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -38.27 376.59 -8.64 -46.91 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.85 Total: 0.19 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -1.82 Total: 7.55 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.16 Total: -61.89 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.78 Total: -15.02 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.27 -8.64 -46.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689327149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.744 kcal (2) G-P(sol) polarization free energy of solvation -38.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds