Wall clock time and date at job start Fri Apr 10 2020 18:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.99962 * 2 1 4 4 C 1.54322 * 109.88183 * 238.90501 * 2 1 3 5 5 H 1.09006 * 110.71959 * 336.74843 * 4 2 1 6 6 N 1.46498 * 110.72056 * 99.84806 * 4 2 1 7 7 C 1.34773 * 119.99897 * 205.00000 * 6 4 2 8 8 O 1.21286 * 119.99827 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00211 * 180.02562 * 7 6 4 10 10 O 1.42897 * 109.47624 * 180.02562 * 9 7 6 11 11 C 1.42893 * 114.00366 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47438 * 179.97438 * 11 10 9 13 13 N 1.30520 * 126.34842 * 269.69193 * 12 11 10 14 14 N 1.28598 * 109.67644 * 179.82186 * 13 12 11 15 15 C 1.30520 * 109.66507 * 0.44566 * 14 13 12 16 16 N 1.35491 * 126.34429 * 90.00002 * 12 11 10 17 17 C 1.46494 * 126.98193 * 359.97438 * 16 12 11 18 18 C 1.55282 * 103.00430 * 218.47057 * 4 2 1 19 19 C 1.54905 * 101.53029 * 35.35966 * 18 4 2 20 20 N 1.47023 * 109.88116 * 121.09746 * 2 1 3 21 21 C 1.36943 * 125.64628 * 298.37310 * 20 2 1 22 22 H 1.07999 * 119.99997 * 0.02562 * 21 20 2 23 23 C 1.38816 * 119.99832 * 180.02562 * 21 20 2 24 24 N 1.31616 * 120.00113 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99740 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47746 * 60.00204 * 25 23 21 27 27 H 1.48506 * 109.47230 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47299 * 299.99977 * 25 23 21 29 29 H 1.09002 * 109.47094 * 300.35691 * 1 2 3 30 30 H 1.08994 * 109.47380 * 60.35827 * 1 2 3 31 31 H 1.08996 * 109.47109 * 180.36020 * 1 2 3 32 32 H 0.96997 * 120.00355 * 25.00009 * 6 4 2 33 33 H 1.09011 * 109.46606 * 299.99832 * 9 7 6 34 34 H 1.08995 * 109.47398 * 59.99178 * 9 7 6 35 35 H 1.08993 * 109.47430 * 299.99880 * 11 10 9 36 36 H 1.09006 * 109.46847 * 59.99525 * 11 10 9 37 37 H 1.08006 * 126.34122 * 179.72748 * 15 14 13 38 38 H 1.09006 * 109.46759 * 90.00394 * 17 16 12 39 39 H 1.08995 * 109.47653 * 210.00038 * 17 16 12 40 40 H 1.08995 * 109.47351 * 330.00570 * 17 16 12 41 41 H 1.09001 * 110.95548 * 277.33125 * 18 4 2 42 42 H 1.08996 * 111.09853 * 153.45188 * 18 4 2 43 43 H 1.09002 * 110.36692 * 204.23391 * 19 18 4 44 44 H 1.08995 * 110.36664 * 82.02192 * 19 18 4 45 45 H 0.97000 * 120.00077 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3051 -1.4460 -1.6182 6 7 2.4515 0.1960 -2.2891 7 6 2.4532 -0.1898 -3.5804 8 8 2.1268 -1.3199 -3.8761 9 6 2.8618 0.7825 -4.6568 10 8 2.7814 0.1429 -5.9321 11 6 3.1495 0.9829 -7.0279 12 6 3.0291 0.2100 -8.3160 13 7 3.9678 -0.4960 -8.8851 14 7 3.5172 -1.0223 -9.9685 15 6 2.2733 -0.6682 -10.1445 16 7 1.9281 0.1240 -9.1009 17 6 0.6282 0.7581 -8.8681 18 6 3.2876 -1.5172 -0.6930 19 6 2.8145 -1.8794 0.7368 20 7 2.0300 -0.7141 1.1839 21 6 1.8041 -0.3562 2.4863 22 1 1.2126 0.5191 2.7109 23 6 2.3354 -1.1184 3.5177 24 7 3.0566 -2.1847 3.2439 25 14 2.0266 -0.6306 5.2942 26 1 0.5659 -0.6335 5.5617 27 1 2.6976 -1.5997 6.1975 28 1 2.5713 0.7296 5.5359 29 1 -0.3633 0.5194 0.8868 30 1 -0.3634 0.5082 -0.8931 31 1 -0.3633 -1.0276 0.0065 32 1 2.7129 1.0996 -2.0526 33 1 2.1944 1.6443 -4.6403 34 1 3.8853 1.1123 -4.4791 35 1 2.4883 1.8487 -7.0602 36 1 4.1793 1.3169 -6.8998 37 1 1.6371 -0.9537 -10.9693 38 1 0.6154 1.7428 -9.3355 39 1 -0.1597 0.1409 -9.2997 40 1 0.4616 0.8626 -7.7960 41 1 4.1663 -0.8728 -0.6624 42 1 3.4839 -2.4151 -1.2789 43 1 3.6716 -2.0338 1.3923 44 1 2.1891 -2.7718 0.7148 45 1 3.4282 -2.7171 3.9646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689327149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:57 Heat of formation + Delta-G solvation = 11.981560 kcal Electronic energy + Delta-G solvation = -26907.271924 eV Core-core repulsion = 22961.856641 eV Total energy + Delta-G solvation = -3945.415283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.13176 -41.05688 -39.45569 -38.46470 -36.00591 -35.59312 -33.88129 -32.70816 -32.06136 -30.79322 -29.30147 -28.48216 -27.29268 -26.09175 -25.65526 -23.40315 -22.30047 -22.03196 -21.59754 -21.29218 -18.75290 -18.52856 -18.11852 -17.82402 -17.39783 -17.29195 -16.86721 -16.42999 -16.17560 -15.90355 -15.68668 -15.37523 -15.23465 -14.61184 -14.32388 -14.26418 -13.99597 -13.77447 -13.63570 -13.23047 -13.18633 -13.00279 -12.93565 -12.70357 -12.59772 -12.57037 -12.24198 -12.09592 -12.02148 -11.56465 -11.44218 -11.44045 -11.12781 -10.88269 -10.82326 -10.71143 -10.43055 -10.02268 -8.89229 -7.73519 -5.18874 0.63200 1.48985 1.51935 1.52748 1.58200 1.61082 1.69646 1.98169 2.52354 2.91541 3.36680 3.45081 3.58820 3.67695 3.82795 3.86898 3.87339 3.94742 3.99105 4.20576 4.23184 4.28186 4.36659 4.41159 4.50924 4.60751 4.63574 4.68582 4.70685 4.81731 4.87465 4.94778 5.05714 5.10447 5.14173 5.37346 5.50777 5.60048 5.62507 5.80849 5.86170 5.94655 6.31365 6.60770 7.11714 7.28709 7.65538 7.80168 8.43742 9.28201 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.036652 B = 0.002039 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.754772 B =13731.611840 C =14050.159057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.152 3.848 3 H 0.060 0.940 4 C 0.153 3.847 5 H 0.075 0.925 6 N -0.698 5.698 7 C 0.508 3.492 8 O -0.580 6.580 9 C 0.053 3.947 10 O -0.396 6.396 11 C 0.149 3.851 12 C 0.165 3.835 13 N -0.328 5.328 14 N -0.353 5.353 15 C 0.167 3.833 16 N -0.466 5.466 17 C 0.061 3.939 18 C -0.140 4.140 19 C 0.157 3.843 20 N -0.614 5.614 21 C -0.225 4.225 22 H 0.088 0.912 23 C -0.072 4.072 24 N -0.952 5.952 25 Si 0.979 3.021 26 H -0.280 1.280 27 H -0.300 1.300 28 H -0.273 1.273 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.419 0.581 33 H 0.131 0.869 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.264 0.736 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.077 0.923 44 H -0.019 1.019 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.163 15.500 -24.513 29.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.045 3.955 3 H 0.077 0.923 4 C 0.047 3.953 5 H 0.093 0.907 6 N -0.352 5.352 7 C 0.295 3.705 8 O -0.459 6.459 9 C -0.026 4.026 10 O -0.314 6.314 11 C 0.071 3.929 12 C -0.105 4.105 13 N -0.170 5.170 14 N -0.193 5.193 15 C -0.121 4.121 16 N -0.156 5.156 17 C -0.080 4.080 18 C -0.180 4.180 19 C 0.031 3.969 20 N -0.339 5.339 21 C -0.354 4.354 22 H 0.106 0.894 23 C -0.264 4.264 24 N -0.602 5.602 25 Si 0.808 3.192 26 H -0.206 1.206 27 H -0.226 1.226 28 H -0.199 1.199 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.257 0.743 33 H 0.149 0.851 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.118 0.882 37 H 0.280 0.720 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.095 0.905 44 H -0.001 1.001 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.115 13.834 -24.772 28.831 hybrid contribution -1.083 0.371 1.516 1.900 sum -6.199 14.205 -23.256 27.947 Atomic orbital electron populations 1.22132 0.96576 1.00541 1.01375 1.21216 0.93473 0.95282 0.85518 0.92278 1.21695 0.96023 0.90920 0.86641 0.90685 1.45666 1.68269 1.16461 1.04814 1.21032 0.76871 0.88628 0.83945 1.90738 1.49088 1.23126 1.82939 1.22387 1.05234 0.94066 0.80938 1.88026 1.89394 1.39754 1.14204 1.20784 1.03799 0.90092 0.78184 1.24807 0.84713 1.03080 0.97856 1.74143 1.27295 1.10908 1.04626 1.74164 1.10328 1.22358 1.12407 1.27323 0.95450 0.94056 0.95305 1.46476 1.13553 1.37339 1.18216 1.22574 0.79513 1.00350 1.05514 1.23221 0.98003 0.99908 0.96854 1.21656 0.95735 0.87814 0.91709 1.44729 1.59714 1.28528 1.00975 1.19369 1.26269 1.08110 0.81667 0.89424 1.25647 1.00934 0.97780 1.02061 1.70044 1.40335 1.19080 1.30781 0.85134 0.77476 0.77147 0.79461 1.20613 1.22605 1.19921 0.93282 0.90754 0.95017 0.74306 0.85127 0.86629 0.86565 0.88176 0.71990 0.87039 0.86649 0.88571 0.90738 0.92220 0.90468 1.00101 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.14 71.98 0.66 -4.34 16 2 C 0.15 5.61 3.48 45.34 0.16 5.77 16 3 H 0.06 1.96 7.72 -2.39 -0.02 1.94 16 4 C 0.15 5.25 2.83 46.22 0.13 5.38 16 5 H 0.08 2.91 7.26 -2.38 -0.02 2.89 16 6 N -0.70 -16.81 5.19 -436.71 -2.26 -19.07 16 7 C 0.51 13.14 7.91 87.66 0.69 13.83 16 8 O -0.58 -22.22 16.14 15.99 0.26 -21.96 16 9 C 0.05 0.74 6.42 71.24 0.46 1.20 16 10 O -0.40 -8.26 9.86 -129.95 -1.28 -9.54 16 11 C 0.15 1.97 6.11 71.24 0.43 2.40 16 12 C 0.16 3.35 7.66 137.98 1.06 4.41 16 13 N -0.33 -9.48 12.21 -50.16 -0.61 -10.10 16 14 N -0.35 -9.47 12.21 -59.99 -0.73 -10.20 16 15 C 0.17 2.62 12.74 180.11 2.30 4.91 16 16 N -0.47 -6.37 3.15 -542.09 -1.71 -8.08 16 17 C 0.06 0.17 10.90 127.77 1.39 1.56 16 18 C -0.14 -5.54 6.79 32.03 0.22 -5.32 16 19 C 0.16 7.86 5.88 86.85 0.51 8.37 16 20 N -0.61 -30.10 3.13 -668.27 -2.09 -32.19 16 21 C -0.23 -12.00 9.87 84.03 0.83 -11.17 16 22 H 0.09 4.38 7.83 -2.91 -0.02 4.35 16 23 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 24 N -0.95 -56.69 10.09 21.65 0.22 -56.47 16 25 Si 0.98 44.79 29.55 68.60 2.03 46.81 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 29 H 0.05 1.71 8.02 -2.39 -0.02 1.69 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.42 6.78 8.37 -92.71 -0.78 6.00 16 33 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.12 0.43 7.86 -2.39 -0.02 0.41 16 36 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.26 1.15 8.06 -2.91 -0.02 1.12 16 38 H 0.11 -0.26 8.14 -2.38 -0.02 -0.28 16 39 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.10 0.30 7.81 -2.39 -0.02 0.29 16 41 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.08 4.39 5.87 -2.39 -0.01 4.38 16 44 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 45 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -90.87 376.59 3.34 -87.53 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.23 Total: 9.82 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 9.30 Total: 23.45 kcal Atomic # 7 Polarization: -128.93 SS G_CDS: -7.19 Total: -136.12 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -1.02 Total: -31.49 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -90.87 3.34 -87.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689327149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.507 kcal (2) G-P(sol) polarization free energy of solvation -90.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds