Wall clock time and date at job start Fri Apr 10 2020 18:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99805 * 2 1 4 4 C 1.52998 * 109.47035 * 66.04498 * 3 2 1 5 5 C 1.53006 * 109.47037 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47157 * 180.02562 * 5 4 3 7 7 C 1.34769 * 119.99854 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00559 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.50704 * 109.47511 * 179.97438 * 9 7 6 11 11 C 1.34664 * 126.58651 * 275.03761 * 10 9 7 12 12 N 1.34134 * 108.01786 * 179.74146 * 11 10 9 13 13 C 1.30496 * 109.25675 * 0.37372 * 12 11 10 14 14 N 1.35047 * 108.70161 * 359.62603 * 13 12 11 15 15 H 0.96997 * 126.40535 * 180.25138 * 14 13 12 16 16 C 1.46897 * 111.00333 * 236.05016 * 2 1 3 17 17 C 1.50706 * 109.46914 * 293.95154 * 16 2 1 18 18 O 1.21290 * 119.99814 * 359.97438 * 17 16 2 19 19 N 1.34773 * 120.00265 * 179.97438 * 17 16 2 20 20 C 1.37094 * 120.00236 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99806 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00261 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99920 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99940 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47134 * 90.00383 * 24 22 20 26 26 H 1.48499 * 109.47318 * 210.00726 * 24 22 20 27 27 H 1.48505 * 109.46919 * 330.00679 * 24 22 20 28 28 H 1.08999 * 109.47244 * 60.00026 * 1 2 3 29 29 H 1.09005 * 109.46913 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47172 * 299.99986 * 1 2 3 31 31 H 1.08999 * 109.47232 * 306.04633 * 3 2 1 32 32 H 1.09002 * 109.47414 * 186.05004 * 3 2 1 33 33 H 1.08997 * 109.47292 * 60.00703 * 4 3 2 34 34 H 1.08991 * 109.47354 * 299.99745 * 4 3 2 35 35 H 1.08999 * 109.47235 * 60.00133 * 5 4 3 36 36 H 1.09002 * 109.47410 * 300.00505 * 5 4 3 37 37 H 0.96999 * 119.99913 * 359.97438 * 6 5 4 38 38 H 1.08992 * 109.47512 * 59.99585 * 9 7 6 39 39 H 1.09004 * 109.47075 * 299.99537 * 9 7 6 40 40 H 1.07998 * 125.99171 * 359.92955 * 11 10 9 41 41 H 1.08002 * 125.65353 * 179.89694 * 13 12 11 42 42 H 1.09004 * 109.47400 * 53.94685 * 16 2 1 43 43 H 1.08993 * 109.47422 * 173.95213 * 16 2 1 44 44 H 0.97004 * 119.99761 * 0.02562 * 19 17 16 45 45 H 0.96998 * 119.99476 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0574 1.3182 5 6 2.1791 3.4861 1.3180 6 7 1.8310 4.1428 2.5805 7 6 2.2117 5.4159 2.8051 8 8 2.8428 6.0180 1.9623 9 6 1.8542 6.0912 4.1040 10 6 2.3936 7.4985 4.1037 11 6 3.6363 7.8818 4.4531 12 7 3.7157 9.2130 4.3094 13 6 2.5669 9.6701 3.8918 14 7 1.7146 8.6325 3.7476 15 1 0.7936 8.6815 3.4474 16 6 1.9955 -0.7659 -1.1376 17 6 1.6370 -2.2204 -0.9729 18 8 1.0055 -2.5833 -0.0030 19 7 2.0181 -3.1179 -1.9033 20 6 1.6916 -4.4410 -1.7537 21 1 1.1293 -4.7641 -0.8901 22 6 2.0849 -5.3664 -2.7126 23 7 1.7723 -6.6347 -2.5689 24 14 3.0581 -4.8077 -4.2060 25 1 4.5105 -4.8751 -3.9039 26 1 2.7503 -5.6937 -5.3573 27 1 2.6872 -3.4100 -4.5439 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5610 1.9274 -0.8309 32 1 3.0797 1.3445 -0.1083 33 1 2.0658 1.5016 2.1491 34 1 0.5471 2.0845 1.4265 35 1 1.7443 4.0418 0.4871 36 1 3.2633 3.4596 1.2094 37 1 1.3260 3.6615 3.2544 38 1 2.2899 5.5357 4.9344 39 1 0.7700 6.1174 4.2135 40 1 4.4308 7.2310 4.7872 41 1 2.3371 10.7060 3.6904 42 1 1.5611 -0.3872 -2.0628 43 1 3.0797 -0.6610 -1.1756 44 1 2.5235 -2.8277 -2.6787 45 1 2.0466 -7.2806 -3.2386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689854051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:03 Heat of formation + Delta-G solvation = -3.842251 kcal Electronic energy + Delta-G solvation = -25612.931048 eV Core-core repulsion = 21666.829593 eV Total energy + Delta-G solvation = -3946.101455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.41915 -39.93633 -38.85928 -37.10128 -35.34918 -33.93442 -33.29072 -32.44378 -31.71291 -31.44615 -28.21732 -27.67910 -26.22869 -24.64807 -22.82504 -21.99034 -21.54900 -21.16648 -20.47846 -19.36485 -18.40225 -18.23582 -17.45833 -16.53574 -16.30205 -15.86915 -15.55511 -15.24281 -15.02430 -14.97078 -14.66709 -14.33542 -14.06701 -13.86715 -13.70249 -13.53877 -13.49433 -13.10623 -12.81388 -12.45071 -12.31318 -12.19988 -11.83261 -11.78023 -11.41751 -11.36409 -11.04086 -10.83282 -10.60917 -10.44255 -10.35459 -10.24147 -9.99055 -9.55445 -9.44420 -8.75689 -8.60320 -8.19607 -7.99972 -6.32567 -3.83950 1.58586 2.23575 2.62056 2.79048 2.98859 3.01339 3.05990 3.14204 3.72054 3.88576 4.09093 4.10566 4.39554 4.45833 4.49783 4.69944 4.76284 4.86514 4.88182 4.95796 5.06594 5.20042 5.24598 5.29466 5.40944 5.46771 5.54084 5.61198 5.78914 5.79415 5.82550 5.89142 5.92209 5.98420 6.07734 6.36024 6.45864 6.95864 7.08638 7.11841 7.26439 7.57154 7.70097 7.83055 8.13132 8.58879 8.93856 9.41133 9.82056 10.80537 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.040980 B = 0.001541 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.099900 B =18164.797254 C =18489.796957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.519 5.519 3 C 0.058 3.942 4 C -0.127 4.127 5 C 0.120 3.880 6 N -0.729 5.729 7 C 0.509 3.491 8 O -0.529 6.529 9 C -0.065 4.065 10 C -0.010 4.010 11 C -0.006 4.006 12 N -0.494 5.494 13 C 0.187 3.813 14 N -0.563 5.563 15 H 0.418 0.582 16 C 0.043 3.957 17 C 0.453 3.547 18 O -0.560 6.560 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.014 0.986 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.403 0.597 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.168 0.832 41 H 0.208 0.792 42 H 0.049 0.951 43 H 0.090 0.910 44 H 0.370 0.630 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.089 28.850 10.453 30.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.242 5.242 3 C -0.071 4.071 4 C -0.166 4.166 5 C -0.003 4.003 6 N -0.381 5.381 7 C 0.294 3.706 8 O -0.404 6.404 9 C -0.106 4.106 10 C -0.126 4.126 11 C -0.154 4.154 12 N -0.213 5.213 13 C -0.097 4.097 14 N -0.167 5.167 15 H 0.255 0.745 16 C -0.089 4.089 17 C 0.238 3.762 18 O -0.442 6.442 19 N -0.231 5.231 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.033 0.967 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.237 0.763 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.185 0.815 41 H 0.224 0.776 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.203 0.797 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.138 29.043 11.005 31.079 hybrid contribution -0.898 -0.056 -2.146 2.327 sum -2.037 28.988 8.859 30.379 Atomic orbital electron populations 1.22594 0.86707 1.04560 0.99006 1.61538 1.08790 1.11340 1.42582 1.22008 1.00484 0.88831 0.95790 1.21776 1.01772 0.93446 0.99564 1.21342 1.00796 0.92665 0.85541 1.45994 1.58080 1.13705 1.20361 1.20525 0.79612 0.81667 0.88784 1.90768 1.38859 1.64276 1.46506 1.20030 1.02854 0.90411 0.97339 1.20427 0.94868 0.87990 1.09274 1.22051 0.95367 0.91951 1.06032 1.70289 1.22163 1.10380 1.18488 1.24959 0.86078 0.94613 1.04010 1.43198 1.14637 1.07234 1.51597 0.74461 1.21901 1.00838 0.94003 0.92129 1.19636 0.85111 0.86445 0.84973 1.90520 1.42708 1.79955 1.30990 1.42216 1.51015 1.08390 1.21434 1.19425 1.33864 0.80325 1.09756 0.86269 1.25032 0.97854 0.95124 0.98099 1.69621 1.45658 1.01151 1.35702 0.86678 0.80940 0.78695 0.83101 1.19580 1.20193 1.19552 0.96731 0.88552 0.91959 0.94890 0.90535 0.90005 0.91076 0.91623 0.91175 0.76319 0.86238 0.88091 0.81503 0.77559 0.93346 0.89211 0.79718 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.96 60.06 0.54 0.82 16 2 N -0.52 -7.80 4.50 -244.37 -1.10 -8.90 16 3 C 0.06 0.63 4.96 -3.82 -0.02 0.61 16 4 C -0.13 -1.09 5.25 -26.73 -0.14 -1.23 16 5 C 0.12 0.98 5.67 -4.04 -0.02 0.96 16 6 N -0.73 -4.76 5.56 -60.29 -0.33 -5.09 16 7 C 0.51 4.18 7.82 -10.99 -0.09 4.09 16 8 O -0.53 -6.92 16.03 5.55 0.09 -6.83 16 9 C -0.07 -0.31 6.26 -29.03 -0.18 -0.49 16 10 C -0.01 -0.08 5.73 -81.60 -0.47 -0.54 16 11 C -0.01 -0.06 11.79 -17.81 -0.21 -0.27 16 12 N -0.49 -5.37 11.25 -14.66 -0.16 -5.53 16 13 C 0.19 1.37 13.04 -90.37 -1.18 0.19 16 14 N -0.56 -3.40 6.15 -10.30 -0.06 -3.46 16 15 H 0.42 1.17 8.96 -40.82 -0.37 0.80 16 16 C 0.04 0.70 5.45 -4.97 -0.03 0.67 16 17 C 0.45 10.07 7.47 -10.98 -0.08 9.99 16 18 O -0.56 -14.58 13.91 5.55 0.08 -14.51 16 19 N -0.59 -13.89 5.09 -10.96 -0.06 -13.95 16 20 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 21 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.55 13.96 55.50 0.77 -24.78 16 24 Si 0.88 19.21 27.74 -169.99 -4.71 14.49 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.10 1.79 5.83 -51.93 -0.30 1.49 16 30 H 0.06 0.77 6.47 -51.93 -0.34 0.43 16 31 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.08 0.79 7.93 -51.93 -0.41 0.37 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.58 6.55 -51.93 -0.34 0.24 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.40 1.52 8.47 -40.82 -0.35 1.18 16 38 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 41 H 0.21 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 43 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 44 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 45 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 377.81 15.07 5.69 5.69 Total: -1.00 -38.54 377.81 -8.46 -47.00 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.53 Total: 8.71 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -2.13 Total: 7.15 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.94 Total: -61.72 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.17 Total: -21.33 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.54 -8.46 -47.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689854051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.156 kcal (2) G-P(sol) polarization free energy of solvation -38.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds