Wall clock time and date at job start Fri Apr 10 2020 18:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 110.99805 * 2 1 4 4 C 1.52998 * 109.47035 * 66.04498 * 3 2 1 5 5 C 1.53006 * 109.47037 * 180.02562 * 4 3 2 6 6 N 1.46501 * 109.47157 * 180.02562 * 5 4 3 7 7 C 1.34769 * 119.99854 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00559 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.50704 * 109.47511 * 179.97438 * 9 7 6 11 11 C 1.34664 * 126.58651 * 275.03761 * 10 9 7 12 12 N 1.34134 * 108.01786 * 179.74146 * 11 10 9 13 13 C 1.30496 * 109.25675 * 0.37372 * 12 11 10 14 14 N 1.35047 * 108.70161 * 359.62603 * 13 12 11 15 15 H 0.96997 * 126.40535 * 180.25138 * 14 13 12 16 16 C 1.46897 * 111.00333 * 236.05016 * 2 1 3 17 17 C 1.50706 * 109.46914 * 293.95154 * 16 2 1 18 18 O 1.21290 * 119.99814 * 359.97438 * 17 16 2 19 19 N 1.34773 * 120.00265 * 179.97438 * 17 16 2 20 20 C 1.37094 * 120.00236 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99806 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00261 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99920 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99940 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47134 * 90.00383 * 24 22 20 26 26 H 1.48499 * 109.47318 * 210.00726 * 24 22 20 27 27 H 1.48505 * 109.46919 * 330.00679 * 24 22 20 28 28 H 1.08999 * 109.47244 * 60.00026 * 1 2 3 29 29 H 1.09005 * 109.46913 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47172 * 299.99986 * 1 2 3 31 31 H 1.08999 * 109.47232 * 306.04633 * 3 2 1 32 32 H 1.09002 * 109.47414 * 186.05004 * 3 2 1 33 33 H 1.08997 * 109.47292 * 60.00703 * 4 3 2 34 34 H 1.08991 * 109.47354 * 299.99745 * 4 3 2 35 35 H 1.08999 * 109.47235 * 60.00133 * 5 4 3 36 36 H 1.09002 * 109.47410 * 300.00505 * 5 4 3 37 37 H 0.96999 * 119.99913 * 359.97438 * 6 5 4 38 38 H 1.08992 * 109.47512 * 59.99585 * 9 7 6 39 39 H 1.09004 * 109.47075 * 299.99537 * 9 7 6 40 40 H 1.07998 * 125.99171 * 359.92955 * 11 10 9 41 41 H 1.08002 * 125.65353 * 179.89694 * 13 12 11 42 42 H 1.09004 * 109.47400 * 53.94685 * 16 2 1 43 43 H 1.08993 * 109.47422 * 173.95213 * 16 2 1 44 44 H 0.97004 * 119.99761 * 0.02562 * 19 17 16 45 45 H 0.96998 * 119.99476 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0574 1.3182 5 6 2.1791 3.4861 1.3180 6 7 1.8310 4.1428 2.5805 7 6 2.2117 5.4159 2.8051 8 8 2.8428 6.0180 1.9623 9 6 1.8542 6.0912 4.1040 10 6 2.3936 7.4985 4.1037 11 6 3.6363 7.8818 4.4531 12 7 3.7157 9.2130 4.3094 13 6 2.5669 9.6701 3.8918 14 7 1.7146 8.6325 3.7476 15 1 0.7936 8.6815 3.4474 16 6 1.9955 -0.7659 -1.1376 17 6 1.6370 -2.2204 -0.9729 18 8 1.0055 -2.5833 -0.0030 19 7 2.0181 -3.1179 -1.9033 20 6 1.6916 -4.4410 -1.7537 21 1 1.1293 -4.7641 -0.8901 22 6 2.0849 -5.3664 -2.7126 23 7 1.7723 -6.6347 -2.5689 24 14 3.0581 -4.8077 -4.2060 25 1 4.5105 -4.8751 -3.9039 26 1 2.7503 -5.6937 -5.3573 27 1 2.6872 -3.4100 -4.5439 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5610 1.9274 -0.8309 32 1 3.0797 1.3445 -0.1083 33 1 2.0658 1.5016 2.1491 34 1 0.5471 2.0845 1.4265 35 1 1.7443 4.0418 0.4871 36 1 3.2633 3.4596 1.2094 37 1 1.3260 3.6615 3.2544 38 1 2.2899 5.5357 4.9344 39 1 0.7700 6.1174 4.2135 40 1 4.4308 7.2310 4.7872 41 1 2.3371 10.7060 3.6904 42 1 1.5611 -0.3872 -2.0628 43 1 3.0797 -0.6610 -1.1756 44 1 2.5235 -2.8277 -2.6787 45 1 2.0466 -7.2806 -3.2386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689854051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:02 Heat of formation + Delta-G solvation = -36.177776 kcal Electronic energy + Delta-G solvation = -25614.333222 eV Core-core repulsion = 21666.829593 eV Total energy + Delta-G solvation = -3947.503629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.95883 -40.63996 -40.43880 -38.30653 -36.26134 -35.79817 -33.86708 -33.74171 -33.05126 -32.19899 -29.53054 -28.39587 -27.25471 -26.23274 -23.89075 -22.55235 -22.17827 -21.93296 -21.23507 -21.15670 -20.15468 -18.89020 -18.04602 -17.82304 -17.02161 -16.94931 -16.80078 -16.46238 -16.15776 -15.79759 -15.65060 -15.33319 -15.19212 -14.86146 -14.78134 -14.51312 -14.39403 -14.27434 -13.98654 -13.70163 -13.48171 -13.10112 -12.97880 -12.77284 -12.70351 -12.49092 -12.40663 -12.29893 -11.97199 -11.62111 -11.46016 -11.09947 -10.96458 -10.87702 -10.35005 -10.21930 -10.07814 -9.32471 -9.19083 -8.40316 -6.00707 1.05065 1.30600 1.36087 1.44575 1.64734 1.97740 2.09157 2.23526 2.27235 2.41489 2.70965 3.15811 3.28548 3.65707 3.92720 3.98517 4.01927 4.10445 4.14343 4.16643 4.27899 4.40497 4.44669 4.54628 4.56810 4.61790 4.63750 4.66460 4.68507 4.76907 4.82756 5.12181 5.22042 5.26486 5.31434 5.47244 5.54360 5.78571 5.91473 6.03163 6.22958 6.54809 6.61190 6.61481 6.90175 7.14556 7.28243 7.41772 7.99212 8.77314 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.040980 B = 0.001541 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.099900 B =18164.797254 C =18489.796957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.058 3.942 4 C -0.115 4.115 5 C 0.128 3.872 6 N -0.717 5.717 7 C 0.509 3.491 8 O -0.583 6.583 9 C -0.057 4.057 10 C -0.008 4.008 11 C -0.044 4.044 12 N -0.544 5.544 13 C 0.187 3.813 14 N -0.554 5.554 15 H 0.434 0.566 16 C 0.053 3.947 17 C 0.451 3.549 18 O -0.605 6.605 19 N -0.594 5.594 20 C -0.327 4.327 21 H 0.056 0.944 22 C -0.014 4.014 23 N -0.935 5.935 24 Si 0.963 3.037 25 H -0.258 1.258 26 H -0.276 1.276 27 H -0.232 1.232 28 H 0.031 0.969 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.418 0.582 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.166 0.834 41 H 0.242 0.758 42 H 0.076 0.924 43 H 0.119 0.881 44 H 0.389 0.611 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.952 31.588 9.300 32.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.070 4.070 4 C -0.153 4.153 5 C 0.003 3.997 6 N -0.370 5.370 7 C 0.296 3.704 8 O -0.463 6.463 9 C -0.098 4.098 10 C -0.124 4.124 11 C -0.192 4.192 12 N -0.263 5.263 13 C -0.097 4.097 14 N -0.159 5.159 15 H 0.275 0.725 16 C -0.078 4.078 17 C 0.239 3.761 18 O -0.489 6.489 19 N -0.236 5.236 20 C -0.456 4.456 21 H 0.074 0.926 22 C -0.213 4.213 23 N -0.576 5.576 24 Si 0.784 3.216 25 H -0.182 1.182 26 H -0.201 1.201 27 H -0.155 1.155 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.256 0.744 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.183 0.817 41 H 0.258 0.742 42 H 0.094 0.906 43 H 0.137 0.863 44 H 0.224 0.776 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.044 31.790 9.884 33.308 hybrid contribution -1.033 -0.904 -1.649 2.146 sum -2.077 30.886 8.235 32.032 Atomic orbital electron populations 1.22469 0.86937 1.02071 1.00944 1.61488 1.08864 1.13776 1.42354 1.22100 1.00945 0.86584 0.97398 1.21631 1.02161 0.93183 0.98293 1.21152 1.00016 0.92349 0.86145 1.45885 1.57533 1.13352 1.20200 1.21065 0.78467 0.81677 0.89202 1.90753 1.41430 1.65564 1.48517 1.20138 1.05082 0.88517 0.96020 1.20760 0.94349 0.89480 1.07856 1.22273 0.96743 0.92122 1.08028 1.70219 1.24364 1.11228 1.20515 1.25624 0.85374 0.96146 1.02571 1.43208 1.15312 1.06569 1.50793 0.72538 1.21839 1.02788 0.89306 0.93873 1.20913 0.82895 0.88863 0.83426 1.90510 1.44136 1.81450 1.32760 1.42056 1.51909 1.06833 1.22758 1.19003 1.34772 0.83106 1.08734 0.92580 1.26081 0.98644 0.94659 1.01893 1.69803 1.47285 1.02992 1.37495 0.85384 0.79037 0.80092 0.77133 1.18222 1.20114 1.15532 0.95099 0.93141 0.89740 0.93529 0.89674 0.90433 0.90297 0.92172 0.92310 0.74440 0.83758 0.84547 0.81690 0.74250 0.90621 0.86293 0.77587 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 8.96 127.69 1.14 1.80 16 2 N -0.54 -14.97 4.50 -927.05 -4.17 -19.14 16 3 C 0.06 1.06 4.96 86.30 0.43 1.49 16 4 C -0.11 -1.62 5.25 30.60 0.16 -1.46 16 5 C 0.13 1.78 5.67 86.38 0.49 2.27 16 6 N -0.72 -7.45 5.56 -463.05 -2.57 -10.02 16 7 C 0.51 7.30 7.82 87.66 0.69 7.99 16 8 O -0.58 -14.78 16.03 -3.04 -0.05 -14.83 16 9 C -0.06 -0.38 6.26 29.10 0.18 -0.20 16 10 C -0.01 -0.10 5.73 40.95 0.23 0.13 16 11 C -0.04 -0.88 11.79 83.52 0.98 0.11 16 12 N -0.54 -11.87 11.25 -200.31 -2.25 -14.13 16 13 C 0.19 2.52 13.04 180.26 2.35 4.87 16 14 N -0.55 -5.68 6.15 -186.49 -1.15 -6.83 16 15 H 0.43 1.32 8.96 -92.71 -0.83 0.49 16 16 C 0.05 1.58 5.45 85.56 0.47 2.05 16 17 C 0.45 20.01 7.47 87.66 0.66 20.67 16 18 O -0.60 -32.69 13.91 -3.06 -0.04 -32.74 16 19 N -0.59 -27.70 5.09 -306.99 -1.56 -29.27 16 20 C -0.33 -19.02 10.16 84.04 0.85 -18.17 16 21 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.93 -56.17 13.96 21.66 0.30 -55.87 16 24 Si 0.96 38.58 27.74 68.60 1.90 40.48 16 25 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 26 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 27 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 28 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 1.89 5.83 -2.38 -0.01 1.88 16 30 H 0.08 1.91 6.47 -2.39 -0.02 1.89 16 31 H 0.05 0.76 8.12 -2.39 -0.02 0.74 16 32 H 0.08 1.44 7.93 -2.39 -0.02 1.42 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.02 6.55 -2.39 -0.02 1.00 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.42 1.75 8.47 -92.71 -0.79 0.96 16 38 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.14 -0.03 8.14 -2.38 -0.02 -0.05 16 40 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 41 H 0.24 1.09 8.06 -2.91 -0.02 1.06 16 42 H 0.08 1.90 8.12 -2.39 -0.02 1.88 16 43 H 0.12 2.90 7.93 -2.39 -0.02 2.88 16 44 H 0.39 15.02 5.76 -92.70 -0.53 14.48 16 45 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -92.00 377.81 -1.66 -93.66 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -1.17 Total: 27.46 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 9.10 Total: 21.22 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -11.40 Total: -135.25 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -0.09 Total: -47.57 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 1.90 Total: 40.48 kcal Total: -92.00 -1.66 -93.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689854051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.478 kcal (2) G-P(sol) polarization free energy of solvation -92.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds