Wall clock time and date at job start Fri Apr 10 2020 18:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99638 * 2 1 4 4 H 1.48498 * 109.46941 * 240.00259 * 3 2 1 5 5 H 1.48500 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46961 * 120.00268 * 3 2 1 7 7 C 1.38812 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99920 * 196.91565 * 7 2 1 9 9 N 1.36936 * 119.99795 * 16.91637 * 7 2 1 10 10 C 1.47152 * 120.98522 * 26.21554 * 9 7 2 11 11 C 1.53295 * 108.38341 * 129.48520 * 10 9 7 12 12 O 1.42963 * 109.22199 * 52.30351 * 11 10 9 13 13 C 1.42961 * 114.16623 * 297.41464 * 12 11 10 14 14 H 1.08995 * 109.55535 * 302.63538 * 13 12 11 15 15 C 1.52999 * 109.51041 * 182.50789 * 13 12 11 16 16 N 1.46497 * 109.47557 * 65.25533 * 15 13 12 17 17 C 1.34777 * 120.00383 * 179.97438 * 16 15 13 18 18 O 1.21286 * 119.99802 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00026 * 180.02562 * 17 16 15 20 20 H 1.08991 * 109.57772 * 59.99767 * 19 17 16 21 21 C 1.53140 * 109.57421 * 299.73534 * 19 17 16 22 22 N 1.47187 * 109.22196 * 240.23050 * 21 19 17 23 23 C 1.46938 * 111.02061 * 297.89882 * 22 21 19 24 24 C 1.53126 * 109.35082 * 62.02948 * 23 22 21 25 25 C 1.53379 * 109.57751 * 180.26335 * 19 17 16 26 26 C 1.53396 * 108.60004 * 60.84357 * 25 19 17 27 27 C 1.46945 * 111.12835 * 61.92127 * 22 21 19 28 28 C 1.47156 * 120.97724 * 206.23273 * 9 7 2 29 29 H 0.96998 * 120.00557 * 359.97438 * 1 2 3 30 30 H 1.08990 * 109.68272 * 249.20746 * 10 9 7 31 31 H 1.08998 * 109.68011 * 9.76339 * 10 9 7 32 32 H 1.09002 * 109.50892 * 172.22642 * 11 10 9 33 33 H 1.09006 * 109.51369 * 292.37575 * 11 10 9 34 34 H 1.09005 * 109.47119 * 305.25323 * 15 13 12 35 35 H 1.09004 * 109.46838 * 185.25463 * 15 13 12 36 36 H 0.97001 * 119.99478 * 0.02562 * 16 15 13 37 37 H 1.09001 * 109.49353 * 0.15456 * 21 19 17 38 38 H 1.08996 * 109.48774 * 120.22247 * 21 19 17 39 39 H 1.08999 * 109.49201 * 302.06717 * 23 22 21 40 40 H 1.08993 * 109.51302 * 182.00345 * 23 22 21 41 41 H 1.09004 * 109.57844 * 240.24224 * 24 23 22 42 42 H 1.09001 * 109.57491 * 119.85916 * 24 23 22 43 43 H 1.09002 * 110.11376 * 299.41258 * 25 19 17 44 44 H 1.08998 * 109.57481 * 178.81264 * 26 25 19 45 45 H 1.08993 * 109.57512 * 299.19732 * 26 25 19 46 46 H 1.09000 * 109.49082 * 58.00777 * 27 22 21 47 47 H 1.09006 * 109.49207 * 178.07740 * 27 22 21 48 48 H 1.09003 * 109.67309 * 110.79266 * 28 9 7 49 49 H 1.09000 * 109.71595 * 350.26228 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2716 9 7 1.3701 -2.3622 -0.3461 10 6 0.1974 -2.3445 -1.2348 11 6 0.4243 -3.3659 -2.3552 12 8 0.7650 -4.6290 -1.7787 13 6 1.9815 -4.6205 -1.0277 14 1 2.8009 -4.2871 -1.6644 15 6 2.2748 -6.0316 -0.5142 16 7 2.5331 -6.9206 -1.6495 17 6 2.8170 -8.2208 -1.4364 18 8 2.8590 -8.6547 -0.3046 19 6 3.0834 -9.1352 -2.6044 20 1 3.9417 -8.7683 -3.1671 21 6 1.8526 -9.1766 -3.5147 22 7 1.3548 -10.5595 -3.5940 23 6 2.3622 -11.4490 -4.1880 24 6 3.6088 -11.4692 -3.2990 25 6 3.3718 -10.5520 -2.0925 26 6 2.1407 -11.0564 -1.3289 27 6 0.9353 -11.0480 -2.2731 28 6 1.8343 -3.6634 0.1606 29 1 -0.4851 0.8400 0.0004 30 1 -0.6955 -2.6118 -0.6698 31 1 0.0769 -1.3497 -1.6638 32 1 -0.4870 -3.4684 -2.9444 33 1 1.2376 -3.0274 -2.9972 34 1 1.4161 -6.3996 0.0474 35 1 3.1502 -6.0074 0.1348 36 1 2.5006 -6.5733 -2.5547 37 1 1.0749 -8.5325 -3.1043 38 1 2.1253 -8.8286 -4.5109 39 1 2.6290 -11.0850 -5.1802 40 1 1.9560 -12.4573 -4.2676 41 1 4.4680 -11.1115 -3.8664 42 1 3.7946 -12.4862 -2.9536 43 1 4.2506 -10.5460 -1.4478 44 1 2.3208 -12.0717 -0.9756 45 1 1.9442 -10.4018 -0.4798 46 1 0.1631 -10.3921 -1.8712 47 1 0.5406 -12.0596 -2.3680 48 1 1.1062 -4.0634 0.8662 49 1 2.7976 -3.5426 0.6562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035368541.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:37 Heat of formation + Delta-G solvation = -50.495303 kcal Electronic energy + Delta-G solvation = -28617.385768 eV Core-core repulsion = 24772.801629 eV Total energy + Delta-G solvation = -3844.584140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.42584 -39.12591 -38.29361 -34.98198 -34.33190 -32.46155 -32.10831 -31.31760 -31.13110 -30.40549 -27.54414 -25.69671 -23.93668 -23.30654 -23.16735 -23.09791 -21.79858 -20.59073 -19.61661 -17.85536 -17.41871 -16.95506 -16.73705 -16.57050 -16.00296 -15.76123 -15.31500 -14.91626 -14.71299 -14.40360 -13.92015 -13.62642 -13.31327 -13.24485 -13.12508 -12.99437 -12.84134 -12.62927 -12.42723 -12.40819 -12.34315 -11.96351 -11.71989 -11.56829 -11.25548 -11.15155 -10.87256 -10.76588 -10.57610 -10.44718 -10.43459 -10.31998 -10.01208 -9.76249 -9.56016 -9.10616 -8.98343 -8.57614 -8.46829 -6.79487 -5.87782 -3.31660 2.62569 3.16441 3.32626 3.38616 3.39392 3.70927 4.19100 4.23917 4.38661 4.41215 4.59592 4.76729 4.87668 4.91837 4.92403 5.03702 5.08711 5.15425 5.20199 5.29716 5.33994 5.45129 5.48352 5.51903 5.58631 5.68230 5.72922 5.76740 5.82549 5.87405 5.93715 5.95549 6.00335 6.11226 6.20349 6.27759 6.33326 6.45010 6.53085 6.71534 6.78704 6.81382 7.06685 7.47939 7.53735 7.66771 7.81757 8.24151 8.29749 9.07672 9.70322 10.27091 11.20335 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.031972 B = 0.002460 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.543571 B =11380.351882 C =11633.393594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.068 0.932 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.389 6.389 13 C 0.065 3.935 14 H 0.058 0.942 15 C 0.130 3.870 16 N -0.719 5.719 17 C 0.517 3.483 18 O -0.540 6.540 19 C -0.140 4.140 20 H 0.098 0.902 21 C 0.060 3.940 22 N -0.527 5.527 23 C 0.051 3.949 24 C -0.151 4.151 25 C -0.064 4.064 26 C -0.160 4.160 27 C 0.051 3.949 28 C 0.122 3.878 29 H 0.256 0.744 30 H 0.028 0.972 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.402 0.598 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.030 0.970 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.223 -20.985 -9.466 23.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.076 0.924 15 C 0.007 3.993 16 N -0.370 5.370 17 C 0.303 3.697 18 O -0.418 6.418 19 C -0.163 4.163 20 H 0.116 0.884 21 C -0.069 4.069 22 N -0.247 5.247 23 C -0.077 4.077 24 C -0.190 4.190 25 C -0.084 4.084 26 C -0.199 4.199 27 C -0.077 4.077 28 C -0.006 4.006 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.237 0.763 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.114 0.886 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.047 0.953 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.564 -21.271 -8.971 23.533 hybrid contribution 1.315 1.435 0.183 1.955 sum 5.880 -19.836 -8.788 22.478 Atomic orbital electron populations 1.70020 1.05279 1.25839 1.53530 1.25051 0.95350 0.98497 1.00690 0.86316 0.78878 0.83070 0.78185 1.20968 1.21515 1.20782 1.19152 0.92624 0.84493 1.42380 0.91391 1.44064 1.33582 1.00975 1.53151 1.21444 0.89109 0.98328 0.89746 1.23327 0.99024 0.84870 0.96581 1.87788 1.41154 1.32594 1.69322 1.22792 0.87526 0.93844 0.95289 0.92420 1.21410 1.01517 0.87963 0.88449 1.45990 1.71138 1.09085 1.10792 1.20481 0.76395 0.82302 0.90475 1.90630 1.51742 1.75123 1.24314 1.22111 1.01689 0.96049 0.96497 0.88413 1.22316 0.94499 0.90936 0.99114 1.62562 1.37668 1.01870 1.22622 1.22223 0.90388 0.97552 0.97569 1.22315 0.99326 1.00183 0.97200 1.20878 0.99293 0.91891 0.96333 1.22469 0.94927 1.02135 1.00382 1.22236 0.96986 1.00925 0.87567 1.21440 0.98915 0.87249 0.92951 0.93396 0.95364 0.88768 0.90002 0.94117 0.90730 0.90250 0.76324 0.89673 0.89668 0.90596 0.90619 0.91600 0.91328 0.89927 0.92060 0.88612 0.90681 0.90773 0.95262 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 11.14 55.49 0.62 -25.13 16 2 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 3 Si 0.91 21.23 29.59 -169.99 -5.03 16.20 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.26 -6.92 9.65 -15.06 -0.15 -7.07 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.68 3.05 -171.83 -0.52 -15.20 16 10 C 0.14 3.27 5.44 -3.53 -0.02 3.25 16 11 C 0.04 0.74 6.98 37.31 0.26 1.00 16 12 O -0.39 -7.07 10.33 -35.23 -0.36 -7.44 16 13 C 0.07 1.11 2.81 -26.58 -0.07 1.03 16 14 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 15 C 0.13 1.91 5.34 -4.04 -0.02 1.89 16 16 N -0.72 -8.97 5.26 -60.29 -0.32 -9.28 16 17 C 0.52 6.60 6.59 -10.98 -0.07 6.52 16 18 O -0.54 -8.65 13.74 5.55 0.08 -8.58 16 19 C -0.14 -1.35 2.59 -91.50 -0.24 -1.59 16 20 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 21 C 0.06 0.55 5.64 -3.59 -0.02 0.53 16 22 N -0.53 -4.93 5.22 -234.06 -1.22 -6.15 16 23 C 0.05 0.38 6.09 -3.74 -0.02 0.36 16 24 C -0.15 -1.12 5.75 -26.47 -0.15 -1.28 16 25 C -0.06 -0.62 2.59 -90.02 -0.23 -0.85 16 26 C -0.16 -1.67 5.43 -26.46 -0.14 -1.82 16 27 C 0.05 0.50 6.10 -3.74 -0.02 0.47 16 28 C 0.12 2.50 6.02 -3.53 -0.02 2.48 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 2.42 6.14 -51.93 -0.32 2.10 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.40 4.36 8.38 -40.82 -0.34 4.02 16 37 H 0.08 0.90 7.46 -51.93 -0.39 0.51 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 1.27 5.57 -51.93 -0.29 0.98 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 LS Contribution 371.75 15.07 5.60 5.60 Total: -1.00 -30.74 371.75 -10.66 -41.40 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -8.49 Total: 3.64 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -1.01 Total: 4.95 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -1.45 Total: -55.77 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.29 Total: -16.01 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.74 -10.66 -41.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035368541.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.097 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds