Wall clock time and date at job start Fri Apr 10 2020 18:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99638 * 2 1 4 4 H 1.48498 * 109.46941 * 240.00259 * 3 2 1 5 5 H 1.48500 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46961 * 120.00268 * 3 2 1 7 7 C 1.38812 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99920 * 196.91565 * 7 2 1 9 9 N 1.36936 * 119.99795 * 16.91637 * 7 2 1 10 10 C 1.47152 * 120.98522 * 26.21554 * 9 7 2 11 11 C 1.53295 * 108.38341 * 129.48520 * 10 9 7 12 12 O 1.42963 * 109.22199 * 52.30351 * 11 10 9 13 13 C 1.42961 * 114.16623 * 297.41464 * 12 11 10 14 14 H 1.08995 * 109.55535 * 302.63538 * 13 12 11 15 15 C 1.52999 * 109.51041 * 182.50789 * 13 12 11 16 16 N 1.46497 * 109.47557 * 65.25533 * 15 13 12 17 17 C 1.34777 * 120.00383 * 179.97438 * 16 15 13 18 18 O 1.21286 * 119.99802 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00026 * 180.02562 * 17 16 15 20 20 H 1.08991 * 109.57772 * 59.99767 * 19 17 16 21 21 C 1.53140 * 109.57421 * 299.73534 * 19 17 16 22 22 N 1.47187 * 109.22196 * 240.23050 * 21 19 17 23 23 C 1.46938 * 111.02061 * 297.89882 * 22 21 19 24 24 C 1.53126 * 109.35082 * 62.02948 * 23 22 21 25 25 C 1.53379 * 109.57751 * 180.26335 * 19 17 16 26 26 C 1.53396 * 108.60004 * 60.84357 * 25 19 17 27 27 C 1.46945 * 111.12835 * 61.92127 * 22 21 19 28 28 C 1.47156 * 120.97724 * 206.23273 * 9 7 2 29 29 H 0.96998 * 120.00557 * 359.97438 * 1 2 3 30 30 H 1.08990 * 109.68272 * 249.20746 * 10 9 7 31 31 H 1.08998 * 109.68011 * 9.76339 * 10 9 7 32 32 H 1.09002 * 109.50892 * 172.22642 * 11 10 9 33 33 H 1.09006 * 109.51369 * 292.37575 * 11 10 9 34 34 H 1.09005 * 109.47119 * 305.25323 * 15 13 12 35 35 H 1.09004 * 109.46838 * 185.25463 * 15 13 12 36 36 H 0.97001 * 119.99478 * 0.02562 * 16 15 13 37 37 H 1.09001 * 109.49353 * 0.15456 * 21 19 17 38 38 H 1.08996 * 109.48774 * 120.22247 * 21 19 17 39 39 H 1.08999 * 109.49201 * 302.06717 * 23 22 21 40 40 H 1.08993 * 109.51302 * 182.00345 * 23 22 21 41 41 H 1.09004 * 109.57844 * 240.24224 * 24 23 22 42 42 H 1.09001 * 109.57491 * 119.85916 * 24 23 22 43 43 H 1.09002 * 110.11376 * 299.41258 * 25 19 17 44 44 H 1.08998 * 109.57481 * 178.81264 * 26 25 19 45 45 H 1.08993 * 109.57512 * 299.19732 * 26 25 19 46 46 H 1.09000 * 109.49082 * 58.00777 * 27 22 21 47 47 H 1.09006 * 109.49207 * 178.07740 * 27 22 21 48 48 H 1.09003 * 109.67309 * 110.79266 * 28 9 7 49 49 H 1.09000 * 109.71595 * 350.26228 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2716 9 7 1.3701 -2.3622 -0.3461 10 6 0.1974 -2.3445 -1.2348 11 6 0.4243 -3.3659 -2.3552 12 8 0.7650 -4.6290 -1.7787 13 6 1.9815 -4.6205 -1.0277 14 1 2.8009 -4.2871 -1.6644 15 6 2.2748 -6.0316 -0.5142 16 7 2.5331 -6.9206 -1.6495 17 6 2.8170 -8.2208 -1.4364 18 8 2.8590 -8.6547 -0.3046 19 6 3.0834 -9.1352 -2.6044 20 1 3.9417 -8.7683 -3.1671 21 6 1.8526 -9.1766 -3.5147 22 7 1.3548 -10.5595 -3.5940 23 6 2.3622 -11.4490 -4.1880 24 6 3.6088 -11.4692 -3.2990 25 6 3.3718 -10.5520 -2.0925 26 6 2.1407 -11.0564 -1.3289 27 6 0.9353 -11.0480 -2.2731 28 6 1.8343 -3.6634 0.1606 29 1 -0.4851 0.8400 0.0004 30 1 -0.6955 -2.6118 -0.6698 31 1 0.0769 -1.3497 -1.6638 32 1 -0.4870 -3.4684 -2.9444 33 1 1.2376 -3.0274 -2.9972 34 1 1.4161 -6.3996 0.0474 35 1 3.1502 -6.0074 0.1348 36 1 2.5006 -6.5733 -2.5547 37 1 1.0749 -8.5325 -3.1043 38 1 2.1253 -8.8286 -4.5109 39 1 2.6290 -11.0850 -5.1802 40 1 1.9560 -12.4573 -4.2676 41 1 4.4680 -11.1115 -3.8664 42 1 3.7946 -12.4862 -2.9536 43 1 4.2506 -10.5460 -1.4478 44 1 2.3208 -12.0717 -0.9756 45 1 1.9442 -10.4018 -0.4798 46 1 0.1631 -10.3921 -1.8712 47 1 0.5406 -12.0596 -2.3680 48 1 1.1062 -4.0634 0.8662 49 1 2.7976 -3.5426 0.6562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035368541.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:29:36 Heat of formation + Delta-G solvation = -72.654171 kcal Electronic energy + Delta-G solvation = -28618.346649 eV Core-core repulsion = 24772.801629 eV Total energy + Delta-G solvation = -3845.545020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.23370 -40.40148 -39.56393 -36.52935 -35.81487 -33.50521 -33.18317 -32.83807 -31.82205 -31.72174 -29.21162 -27.24529 -25.13484 -24.71943 -24.02944 -23.79470 -23.23354 -21.80260 -21.10258 -18.97304 -18.62409 -18.19899 -17.70149 -17.40343 -17.28454 -16.93367 -16.78523 -16.16822 -16.12266 -15.73607 -15.50442 -15.07275 -14.91640 -14.56752 -14.23390 -13.98439 -13.91015 -13.68327 -13.27144 -13.12333 -13.10469 -13.06994 -12.98280 -12.87221 -12.66324 -12.54134 -12.47235 -12.20325 -12.11897 -11.97872 -11.88397 -11.36414 -11.33811 -11.08888 -10.81601 -10.62198 -10.51127 -10.08349 -9.18844 -8.77469 -7.92685 -5.40418 1.46492 1.48170 1.55523 1.62568 2.13204 2.47403 2.76634 3.02890 3.22279 3.46525 3.49215 3.65060 3.84803 3.96042 4.03384 4.06033 4.09905 4.23465 4.24651 4.30463 4.36311 4.40091 4.47908 4.50243 4.51068 4.60738 4.65567 4.69763 4.75662 4.84583 4.88574 4.98739 5.02068 5.05550 5.10231 5.16076 5.21815 5.22481 5.22845 5.34983 5.49649 5.53852 5.59632 6.07910 6.16288 6.24150 6.31617 6.55226 7.04476 7.24683 7.72452 8.26076 9.13232 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.031972 B = 0.002460 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.543571 B =11380.351882 C =11633.393594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.269 4.269 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.054 3.946 12 O -0.389 6.389 13 C 0.081 3.919 14 H 0.071 0.929 15 C 0.142 3.858 16 N -0.712 5.712 17 C 0.515 3.485 18 O -0.577 6.577 19 C -0.132 4.132 20 H 0.123 0.877 21 C 0.063 3.937 22 N -0.535 5.535 23 C 0.050 3.950 24 C -0.142 4.142 25 C -0.067 4.067 26 C -0.158 4.158 27 C 0.054 3.946 28 C 0.116 3.884 29 H 0.252 0.748 30 H -0.003 1.003 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.413 0.587 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.057 0.943 47 H 0.086 0.914 48 H 0.015 0.985 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.918 -22.187 -11.816 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.800 3.200 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.398 4.398 8 H 0.090 0.910 9 N -0.337 5.337 10 C 0.017 3.983 11 C -0.023 4.023 12 O -0.308 6.308 13 C 0.021 3.979 14 H 0.088 0.912 15 C 0.018 3.982 16 N -0.363 5.363 17 C 0.303 3.697 18 O -0.457 6.457 19 C -0.154 4.154 20 H 0.141 0.859 21 C -0.066 4.066 22 N -0.255 5.255 23 C -0.078 4.078 24 C -0.181 4.181 25 C -0.087 4.087 26 C -0.197 4.197 27 C -0.074 4.074 28 C -0.010 4.010 29 H 0.061 0.939 30 H 0.015 0.985 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.250 0.750 37 H 0.086 0.914 38 H 0.127 0.873 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.033 0.967 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.278 -22.502 -11.350 25.973 hybrid contribution 0.762 1.753 1.002 2.158 sum 7.040 -20.749 -10.348 24.232 Atomic orbital electron populations 1.70184 1.06760 1.26204 1.55024 1.25845 0.96099 1.01679 1.00917 0.85271 0.77501 0.78776 0.78463 1.19983 1.22018 1.20198 1.19520 0.93039 0.85572 1.41709 0.90964 1.44350 1.33686 1.01857 1.53855 1.21319 0.87841 0.98483 0.90647 1.23159 1.00805 0.83550 0.94794 1.87807 1.41753 1.32007 1.69225 1.22618 0.87449 0.94129 0.93661 0.91160 1.21126 1.01070 0.86990 0.89055 1.45870 1.70911 1.08897 1.10653 1.21107 0.75326 0.82335 0.90958 1.90629 1.53235 1.75691 1.26123 1.22143 1.02925 0.95148 0.95223 0.85926 1.22339 0.93538 0.90785 0.99968 1.62576 1.38632 1.02285 1.21975 1.22330 0.89786 0.97655 0.97988 1.22265 0.99901 0.99900 0.96078 1.20892 0.98154 0.92538 0.97133 1.22392 0.95966 1.01721 0.99647 1.22173 0.96201 1.01225 0.87836 1.21602 0.98640 0.86382 0.94396 0.93884 0.98474 0.91386 0.87298 0.92920 0.92441 0.89710 0.75021 0.91412 0.87255 0.89043 0.89886 0.90093 0.90738 0.91256 0.91424 0.91883 0.92440 0.89537 0.96719 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.79 11.14 21.65 0.24 -54.55 16 2 C -0.05 -2.74 4.95 84.86 0.42 -2.32 16 3 Si 0.97 43.86 29.59 68.60 2.03 45.89 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.27 -14.54 9.65 84.03 0.81 -13.73 16 8 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 9 N -0.61 -30.62 3.05 -697.55 -2.13 -32.75 16 10 C 0.14 6.82 5.44 86.35 0.47 7.29 16 11 C 0.05 1.97 6.98 72.08 0.50 2.47 16 12 O -0.39 -13.57 10.33 -148.98 -1.54 -15.11 16 13 C 0.08 2.65 2.81 30.69 0.09 2.74 16 14 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 15 C 0.14 4.07 5.34 86.38 0.46 4.53 16 16 N -0.71 -16.70 5.26 -463.05 -2.44 -19.14 16 17 C 0.51 12.65 6.59 87.66 0.58 13.23 16 18 O -0.58 -18.67 13.74 -3.05 -0.04 -18.71 16 19 C -0.13 -2.24 2.59 -11.37 -0.03 -2.27 16 20 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 21 C 0.06 0.99 5.64 86.30 0.49 1.48 16 22 N -0.53 -8.77 5.22 -894.45 -4.67 -13.44 16 23 C 0.05 0.59 6.09 86.34 0.53 1.11 16 24 C -0.14 -1.68 5.75 30.77 0.18 -1.50 16 25 C -0.07 -1.19 2.59 -10.40 -0.03 -1.22 16 26 C -0.16 -3.24 5.43 30.77 0.17 -3.08 16 27 C 0.05 1.01 6.10 86.34 0.53 1.53 16 28 C 0.12 4.79 6.02 86.35 0.52 5.31 16 29 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.07 3.59 6.14 -2.39 -0.01 3.58 16 32 H 0.11 3.35 8.14 -2.39 -0.02 3.34 16 33 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 36 H 0.41 7.94 8.38 -92.71 -0.78 7.16 16 37 H 0.07 1.32 7.46 -2.39 -0.02 1.30 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 1.73 5.57 -2.39 -0.01 1.72 16 46 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.09 1.36 8.14 -2.38 -0.02 1.35 16 48 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.07 2.78 7.96 -2.39 -0.02 2.76 16 Total: -1.00 -67.95 371.75 -2.71 -70.66 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.15 Total: 21.58 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 5.68 Total: 15.57 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -8.99 Total: -119.88 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -1.58 Total: -33.82 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -67.95 -2.71 -70.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035368541.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.993 kcal (2) G-P(sol) polarization free energy of solvation -67.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds