Wall clock time and date at job start Fri Apr 10 2020 18:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47097 * 2 1 4 4 C 1.53001 * 109.47091 * 119.99678 * 2 1 3 5 5 N 1.46492 * 109.47109 * 65.00110 * 4 2 1 6 6 C 1.46827 * 124.33690 * 269.93544 * 5 4 2 7 7 C 1.54479 * 105.44512 * 196.99959 * 6 5 4 8 8 H 1.09006 * 110.96665 * 92.76712 * 7 6 5 9 9 C 1.50700 * 110.96841 * 216.49131 * 7 6 5 10 10 O 1.21283 * 119.99803 * 356.91126 * 9 7 6 11 11 N 1.34777 * 119.99675 * 177.19001 * 9 7 6 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 7 13 13 C 1.52999 * 109.46992 * 179.97438 * 12 11 9 14 14 H 1.08996 * 112.96703 * 55.33372 * 13 12 11 15 15 C 1.53944 * 113.77251 * 187.01187 * 13 12 11 16 16 C 1.53945 * 86.29519 * 137.90543 * 15 13 12 17 17 N 1.47583 * 113.77308 * 283.65417 * 13 12 11 18 18 C 1.36943 * 134.48795 * 41.06427 * 17 13 12 19 19 H 1.08002 * 120.00255 * 359.97438 * 18 17 13 20 20 C 1.38813 * 119.99748 * 180.02562 * 18 17 13 21 21 N 1.31621 * 120.00127 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99929 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47150 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47329 * 119.99635 * 22 20 18 25 25 H 1.48504 * 109.47300 * 239.99607 * 22 20 18 26 26 C 1.54626 * 101.80017 * 334.63063 * 7 6 5 27 27 C 1.34423 * 124.35077 * 89.97844 * 5 4 2 28 28 O 1.21282 * 124.93881 * 359.54587 * 27 5 4 29 29 H 1.09003 * 109.46856 * 60.00686 * 1 2 3 30 30 H 1.09001 * 109.46986 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47093 * 300.00500 * 1 2 3 32 32 H 1.08997 * 109.47424 * 239.99886 * 2 1 3 33 33 H 1.09001 * 109.47681 * 179.97438 * 3 2 1 34 34 H 1.09012 * 109.47199 * 299.99770 * 3 2 1 35 35 H 1.09004 * 109.47594 * 59.99262 * 3 2 1 36 36 H 1.09009 * 109.47068 * 304.99801 * 4 2 1 37 37 H 1.09002 * 109.46796 * 185.00602 * 4 2 1 38 38 H 1.08993 * 110.23736 * 78.02079 * 6 5 4 39 39 H 1.09005 * 110.28131 * 316.00376 * 6 5 4 40 40 H 0.97000 * 119.99894 * 359.71837 * 11 9 7 41 41 H 1.08995 * 109.47421 * 299.99467 * 12 11 9 42 42 H 1.09001 * 109.47621 * 60.00103 * 12 11 9 43 43 H 1.09003 * 113.74305 * 252.25316 * 15 13 12 44 44 H 1.09004 * 113.74023 * 23.56350 * 15 13 12 45 45 H 1.09007 * 113.76668 * 90.69134 * 16 15 13 46 46 H 1.08995 * 113.77329 * 221.97874 * 16 15 13 47 47 H 0.97000 * 119.99564 * 179.97438 * 21 20 18 48 48 H 1.09001 * 110.48772 * 143.45757 * 26 7 6 49 49 H 1.09000 * 110.48508 * 266.10126 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1327 1.1907 6 6 0.3980 -2.6703 1.7321 7 6 0.6165 -4.1958 1.8391 8 1 0.9835 -4.4689 2.8285 9 6 -0.6484 -4.9461 1.5101 10 8 -1.6687 -4.3372 1.2667 11 7 -0.6471 -6.2937 1.4919 12 6 -1.8782 -7.0231 1.1780 13 6 -1.6053 -8.5279 1.2240 14 1 -1.1823 -8.8545 2.1739 15 6 -2.7879 -9.3881 0.7431 16 6 -1.7389 -10.2403 0.0061 17 7 -0.8807 -9.0375 0.0436 18 6 0.1651 -8.5788 -0.7122 19 1 0.6352 -7.6374 -0.4690 20 6 0.6204 -9.3235 -1.7916 21 7 0.0472 -10.4706 -2.0883 22 14 2.0474 -8.6982 -2.8222 23 1 2.5124 -7.3944 -2.2845 24 1 3.1607 -9.6798 -2.7734 25 1 1.6032 -8.5232 -4.2284 26 6 1.6989 -4.4366 0.7615 27 6 2.4000 -3.1020 0.6351 28 8 3.4791 -2.9313 0.1085 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6054 -0.2616 2.1371 37 1 3.1263 -0.6441 1.2952 38 1 -0.4282 -2.4542 1.0549 39 1 0.1998 -2.2476 2.7171 40 1 0.1689 -6.7806 1.6865 41 1 -2.6466 -6.7705 1.9086 42 1 -2.2202 -6.7467 0.1806 43 1 -3.2994 -9.9192 1.5459 44 1 -3.4716 -8.8613 0.0773 45 1 -1.3537 -11.0711 0.5974 46 1 -2.0408 -10.5371 -0.9983 47 1 0.3651 -10.9907 -2.8429 48 1 2.3986 -5.2056 1.0887 49 1 1.2383 -4.7168 -0.1859 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038332114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:43 Heat of formation + Delta-G solvation = -26.163931 kcal Electronic energy + Delta-G solvation = -28348.411888 eV Core-core repulsion = 24504.882835 eV Total energy + Delta-G solvation = -3843.529052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.92384 -39.26180 -37.95613 -36.84834 -35.66367 -34.19892 -32.28989 -31.99402 -28.27706 -27.97245 -27.81305 -27.20931 -26.32471 -23.40895 -23.33978 -21.85091 -20.88003 -20.10374 -19.36588 -19.11107 -17.71373 -16.88986 -16.68396 -16.03786 -15.75892 -15.43093 -15.24506 -14.83408 -14.70859 -14.35703 -14.12289 -13.73203 -13.61917 -13.47333 -13.26067 -13.11431 -12.88395 -12.69551 -12.49739 -12.01669 -11.96758 -11.64734 -11.56916 -11.47820 -11.43122 -11.15737 -11.05029 -11.03100 -10.92372 -10.76646 -10.56191 -10.14225 -9.96068 -9.78008 -9.65422 -9.39799 -8.83870 -8.81463 -8.68899 -6.93501 -5.80201 -3.13011 2.51633 2.71388 2.79531 3.36215 3.38738 3.44464 3.45838 4.14085 4.26461 4.39929 4.58667 4.63098 4.69460 4.77729 4.86252 5.04752 5.13220 5.16172 5.29502 5.31888 5.35723 5.39548 5.42027 5.54053 5.56965 5.60646 5.64255 5.67936 5.72028 5.81523 5.86141 5.86904 6.01473 6.03387 6.14158 6.25271 6.35559 6.41602 6.56925 6.64151 6.78237 6.96549 7.20181 7.36171 7.54836 7.74099 7.93951 8.08563 8.37798 8.99654 9.67643 10.55220 11.36543 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.003496 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.846057 B = 8006.907941 C = 9368.753736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.144 4.144 4 C 0.132 3.868 5 N -0.619 5.619 6 C 0.117 3.883 7 C -0.124 4.124 8 H 0.116 0.884 9 C 0.522 3.478 10 O -0.546 6.546 11 N -0.707 5.707 12 C 0.123 3.877 13 C 0.126 3.874 14 H 0.050 0.950 15 C -0.156 4.156 16 C 0.158 3.842 17 N -0.603 5.603 18 C -0.221 4.221 19 H 0.079 0.921 20 C -0.005 4.005 21 N -0.918 5.918 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.290 1.290 26 C -0.147 4.147 27 C 0.522 3.478 28 O -0.529 6.529 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.405 0.595 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.027 0.973 46 H 0.073 0.927 47 H 0.253 0.747 48 H 0.113 0.887 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 16.465 11.022 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.136 4.136 3 C -0.202 4.202 4 C 0.011 3.989 5 N -0.353 5.353 6 C -0.006 4.006 7 C -0.146 4.146 8 H 0.134 0.866 9 C 0.307 3.693 10 O -0.425 6.425 11 N -0.357 5.357 12 C -0.002 4.002 13 C 0.018 3.982 14 H 0.067 0.933 15 C -0.195 4.195 16 C 0.033 3.967 17 N -0.329 5.329 18 C -0.348 4.348 19 H 0.097 0.903 20 C -0.202 4.202 21 N -0.565 5.565 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.217 1.217 26 C -0.188 4.188 27 C 0.310 3.690 28 O -0.406 6.406 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.239 0.761 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.045 0.955 46 H 0.091 0.909 47 H 0.063 0.937 48 H 0.131 0.869 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.800 17.028 10.303 19.919 hybrid contribution 1.252 -0.113 -0.480 1.346 sum 0.452 16.915 9.824 19.566 Atomic orbital electron populations 1.21947 0.94682 1.02478 1.01683 1.21561 0.96627 0.96389 0.99053 1.21764 1.01088 0.95328 1.01975 1.21473 1.00684 0.78878 0.97912 1.48309 1.20451 1.07672 1.58839 1.22090 0.86836 0.91104 1.00587 1.22240 0.94937 0.95916 1.01529 0.86621 1.19960 0.89183 0.82793 0.77380 1.90684 1.33975 1.68019 1.49784 1.45941 1.14506 1.05625 1.69585 1.21799 0.85412 0.92037 1.00923 1.22499 0.92499 0.90888 0.92321 0.93320 1.23765 0.96734 0.99220 0.99765 1.22232 0.86237 0.89384 0.98812 1.46116 1.37832 1.20568 1.28419 1.18951 1.06907 1.02819 1.06131 0.90294 1.24752 0.99680 0.96832 0.98946 1.69825 1.42922 1.13825 1.29933 0.86182 0.81982 0.78006 0.80439 1.20268 1.21722 1.21726 1.22385 0.98099 0.97083 1.01199 1.20795 0.84401 0.86825 0.77002 1.90728 1.20666 1.85007 1.44151 0.92692 0.91928 0.92693 0.90743 0.92519 0.92355 0.92566 0.90321 0.90018 0.88721 0.89933 0.76071 0.92060 0.90914 0.92776 0.90503 0.95535 0.90866 0.93705 0.86915 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.87 37.16 0.33 -1.05 16 2 C -0.12 -1.10 3.13 -90.62 -0.28 -1.38 16 3 C -0.14 -1.08 9.19 37.16 0.34 -0.73 16 4 C 0.13 1.25 5.35 -4.05 -0.02 1.23 16 5 N -0.62 -6.96 2.71 -172.36 -0.47 -7.43 16 6 C 0.12 1.20 6.03 -3.09 -0.02 1.18 16 7 C -0.12 -1.35 3.54 -90.14 -0.32 -1.67 16 8 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 9 C 0.52 7.42 7.06 -10.98 -0.08 7.35 16 10 O -0.55 -9.38 15.53 5.55 0.09 -9.29 16 11 N -0.71 -10.48 5.34 -60.30 -0.32 -10.80 16 12 C 0.12 2.02 5.54 -4.04 -0.02 2.00 16 13 C 0.13 2.25 4.33 -66.86 -0.29 1.96 16 14 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 15 C -0.16 -2.70 7.86 -25.80 -0.20 -2.91 16 16 C 0.16 3.51 7.52 -2.85 -0.02 3.49 16 17 N -0.60 -14.03 3.59 -169.75 -0.61 -14.64 16 18 C -0.22 -5.68 10.51 -15.06 -0.16 -5.84 16 19 H 0.08 1.92 7.49 -52.49 -0.39 1.53 16 20 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 21 N -0.92 -26.50 11.40 55.49 0.63 -25.87 16 22 Si 0.90 21.85 29.55 -169.99 -5.02 16.83 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 C -0.15 -1.87 6.40 -26.74 -0.17 -2.04 16 27 C 0.52 7.40 8.02 -10.86 -0.09 7.32 16 28 O -0.53 -9.49 17.60 5.56 0.10 -9.40 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.67 5.44 -51.93 -0.28 0.38 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 37 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 38 H 0.09 1.12 5.05 -51.93 -0.26 0.86 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.40 5.69 8.35 -40.82 -0.34 5.35 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 1.82 7.18 -51.93 -0.37 1.45 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.11 1.65 7.89 -51.93 -0.41 1.24 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -32.81 393.76 -9.14 -41.95 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -8.37 Total: 4.05 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -1.10 Total: 8.67 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.76 Total: -58.73 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.18 Total: -18.69 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.81 -9.14 -41.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038332114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.783 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds