Wall clock time and date at job start Fri Apr 10 2020 18:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 C 1.53008 * 109.47092 * 119.99930 * 2 1 3 5 5 N 1.46490 * 109.46949 * 64.99685 * 4 2 1 6 6 C 1.46772 * 124.34831 * 90.00773 * 5 4 2 7 7 C 1.54483 * 105.46994 * 197.03463 * 6 5 4 8 8 H 1.09000 * 110.96836 * 92.73927 * 7 6 5 9 9 C 1.50703 * 110.96556 * 216.46186 * 7 6 5 10 10 O 1.21279 * 119.99926 * 356.90934 * 9 7 6 11 11 N 1.34775 * 119.99773 * 176.91333 * 9 7 6 12 12 C 1.46504 * 119.99531 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.46883 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.96182 * 306.68448 * 13 12 11 15 15 C 1.53937 * 113.76864 * 175.00061 * 13 12 11 16 16 C 1.53947 * 86.29361 * 222.09460 * 15 13 12 17 17 N 1.47583 * 86.11496 * 23.60822 * 16 15 13 18 18 C 1.36938 * 134.49525 * 155.35841 * 17 16 15 19 19 H 1.07998 * 119.99974 * 179.97438 * 18 17 16 20 20 C 1.38810 * 119.99598 * 0.02562 * 18 17 16 21 21 N 1.31616 * 120.00315 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99590 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47112 * 60.00331 * 22 20 18 24 24 H 1.48502 * 109.46929 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47190 * 299.99952 * 22 20 18 26 26 C 1.54621 * 101.80022 * 334.59787 * 7 6 5 27 27 C 1.34418 * 124.35537 * 270.02478 * 5 4 2 28 28 O 1.21287 * 124.93470 * 359.60304 * 27 5 4 29 29 H 1.09000 * 109.46974 * 59.99983 * 1 2 3 30 30 H 1.09000 * 109.47258 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47204 * 300.00669 * 1 2 3 32 32 H 1.08994 * 109.47348 * 239.99869 * 2 1 3 33 33 H 1.09002 * 109.47149 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47076 * 299.99359 * 3 2 1 35 35 H 1.08996 * 109.47584 * 59.99936 * 3 2 1 36 36 H 1.09002 * 109.46374 * 304.99850 * 4 2 1 37 37 H 1.08998 * 109.46691 * 185.00529 * 4 2 1 38 38 H 1.08989 * 110.24680 * 78.02869 * 6 5 4 39 39 H 1.09009 * 110.24105 * 316.03149 * 6 5 4 40 40 H 0.96992 * 120.00503 * 359.97438 * 11 9 7 41 41 H 1.09001 * 109.46891 * 60.00097 * 12 11 9 42 42 H 1.08993 * 109.47378 * 299.99469 * 12 11 9 43 43 H 1.08999 * 113.74218 * 336.43980 * 15 13 12 44 44 H 1.09008 * 113.74080 * 107.64098 * 15 13 12 45 45 H 1.08993 * 113.77115 * 137.90934 * 16 15 13 46 46 H 1.09004 * 113.76864 * 269.31379 * 16 15 13 47 47 H 0.97003 * 120.00164 * 180.02562 * 21 20 18 48 48 H 1.09000 * 110.48558 * 143.45979 * 26 7 6 49 49 H 1.09004 * 110.48816 * 266.10317 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 -2.1327 1.1907 6 6 2.4687 -3.1912 0.5845 7 6 1.5056 -4.3786 0.3631 8 1 1.0731 -4.3488 -0.6369 9 6 2.2037 -5.6918 0.6069 10 8 3.3860 -5.7092 0.8764 11 7 1.5140 -6.8468 0.5253 12 6 2.1928 -8.1234 0.7618 13 6 1.1907 -9.2697 0.6095 14 1 0.3016 -9.1420 1.2269 15 6 1.8261 -10.6676 0.7178 16 6 0.9231 -11.0601 -0.4656 17 7 0.8982 -9.6214 -0.7937 18 6 0.6880 -8.9019 -1.9397 19 1 0.7236 -7.8228 -1.9139 20 6 0.4282 -9.5595 -3.1342 21 7 0.3834 -10.8745 -3.1653 22 14 0.1409 -8.5778 -4.6973 23 1 1.3419 -7.7565 -4.9939 24 1 -0.1141 -9.5083 -5.8263 25 1 -1.0342 -7.6885 -4.5144 26 6 0.4278 -4.1166 1.4403 27 6 0.5032 -2.6250 1.6847 28 8 -0.3498 -1.9688 2.2441 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6053 -0.2616 2.1370 37 1 3.1263 -0.6442 1.2952 38 1 3.2742 -3.4796 1.2597 39 1 2.8768 -2.8538 -0.3683 40 1 0.5684 -6.8330 0.3101 41 1 2.6058 -8.1339 1.7705 42 1 2.9984 -8.2461 0.0380 43 1 2.8902 -10.6855 0.4827 44 1 1.5871 -11.1876 1.6457 45 1 1.4232 -11.6731 -1.2154 46 1 -0.0459 -11.4591 -0.1655 47 1 0.2022 -11.3340 -4.0001 48 1 -0.5586 -4.3934 1.0682 49 1 0.6597 -4.6648 2.3535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038332115.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:53 Heat of formation + Delta-G solvation = -27.115984 kcal Electronic energy + Delta-G solvation = -28025.396962 eV Core-core repulsion = 24181.826626 eV Total energy + Delta-G solvation = -3843.570336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -40.99979 -39.31462 -37.98544 -36.75350 -35.81949 -34.22020 -32.31389 -32.05170 -28.31520 -27.92372 -27.68609 -27.37021 -26.37066 -23.46795 -23.41536 -21.86474 -20.77971 -20.14844 -19.51510 -19.12559 -17.62688 -17.18250 -16.62007 -15.91358 -15.79060 -15.51623 -15.35757 -14.94021 -14.67371 -14.15723 -14.09149 -13.97431 -13.83850 -13.55145 -13.18533 -13.09392 -12.87081 -12.71481 -12.46712 -12.23535 -11.93829 -11.70979 -11.68762 -11.46029 -11.29595 -11.18707 -11.16828 -11.06387 -10.97846 -10.78179 -10.61538 -10.19038 -9.99197 -9.81768 -9.70198 -9.40042 -8.87270 -8.84776 -8.70688 -6.94997 -5.81464 -3.14362 2.41108 2.68407 2.77122 3.33175 3.35438 3.38639 3.40362 4.08152 4.18534 4.37916 4.53120 4.59413 4.66460 4.70508 4.81021 5.02799 5.11865 5.14755 5.23350 5.29366 5.34506 5.36201 5.42191 5.50900 5.54753 5.57236 5.61718 5.65158 5.65372 5.75337 5.82114 5.85919 5.97908 6.01433 6.13268 6.25220 6.33145 6.35680 6.56772 6.63511 6.77905 6.90473 7.19322 7.35919 7.54035 7.72968 7.93161 7.99676 8.36897 8.98575 9.65939 10.54153 11.35176 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.003028 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.098452 B = 9245.670838 C =10359.244357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.130 3.870 5 N -0.617 5.617 6 C 0.118 3.882 7 C -0.125 4.125 8 H 0.119 0.881 9 C 0.523 3.477 10 O -0.546 6.546 11 N -0.708 5.708 12 C 0.123 3.877 13 C 0.126 3.874 14 H 0.050 0.950 15 C -0.156 4.156 16 C 0.158 3.842 17 N -0.603 5.603 18 C -0.222 4.222 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.907 3.093 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C -0.146 4.146 27 C 0.521 3.479 28 O -0.529 6.529 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.404 0.596 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.027 0.973 47 H 0.254 0.746 48 H 0.111 0.889 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.103 16.525 8.810 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.202 4.202 4 C 0.008 3.992 5 N -0.351 5.351 6 C -0.005 4.005 7 C -0.147 4.147 8 H 0.137 0.863 9 C 0.308 3.692 10 O -0.424 6.424 11 N -0.357 5.357 12 C -0.002 4.002 13 C 0.018 3.982 14 H 0.067 0.933 15 C -0.195 4.195 16 C 0.033 3.967 17 N -0.329 5.329 18 C -0.349 4.349 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.737 3.263 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.212 1.212 26 C -0.186 4.186 27 C 0.309 3.691 28 O -0.406 6.406 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.239 0.761 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.045 0.955 47 H 0.064 0.936 48 H 0.130 0.870 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.457 16.931 8.947 19.459 hybrid contribution -0.763 0.408 -1.236 1.508 sum 2.694 17.339 7.711 19.167 Atomic orbital electron populations 1.21797 0.94414 1.02170 1.01500 1.21551 0.96990 0.96357 0.98565 1.21771 1.00894 0.95410 1.02168 1.21496 1.00047 0.78978 0.98634 1.48304 1.20255 1.07960 1.58594 1.21979 0.93469 0.85148 0.99887 1.22249 0.96905 0.93663 1.01898 0.86344 1.19933 0.87070 0.85014 0.77226 1.90686 1.15417 1.87386 1.48926 1.45943 1.13824 1.05958 1.69978 1.21809 0.96476 0.81547 1.00358 1.22506 0.94557 0.92546 0.88604 0.93277 1.23773 1.00563 0.95919 0.99235 1.22202 0.94753 0.87688 0.92024 1.46075 1.83206 1.02473 1.01151 1.18869 1.41837 0.89818 0.84389 0.90453 1.24762 1.02216 0.95683 0.97617 1.69801 1.54923 1.05993 1.25879 0.86286 0.78022 0.78812 0.83144 1.21132 1.21540 1.21217 1.22363 1.00994 0.94708 1.00538 1.20746 0.81092 0.89804 0.77440 1.90728 1.41515 1.65364 1.42945 0.93083 0.92678 0.92418 0.90894 0.92530 0.92319 0.92479 0.89930 0.90218 0.88951 0.89813 0.76123 0.92056 0.90804 0.90500 0.92781 0.90815 0.95548 0.93577 0.87041 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.34 37.16 0.31 -1.08 16 2 C -0.12 -0.95 3.13 -90.62 -0.28 -1.23 16 3 C -0.14 -0.95 9.19 37.16 0.34 -0.61 16 4 C 0.13 1.14 5.39 -4.04 -0.02 1.12 16 5 N -0.62 -6.36 2.78 -172.38 -0.48 -6.84 16 6 C 0.12 1.19 6.69 -3.12 -0.02 1.17 16 7 C -0.13 -1.34 3.54 -90.14 -0.32 -1.66 16 8 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 9 C 0.52 7.41 7.06 -10.98 -0.08 7.33 16 10 O -0.55 -9.41 15.53 5.56 0.09 -9.33 16 11 N -0.71 -10.44 5.52 -60.29 -0.33 -10.77 16 12 C 0.12 2.03 5.54 -4.04 -0.02 2.00 16 13 C 0.13 2.26 4.33 -66.86 -0.29 1.97 16 14 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 15 C -0.16 -2.71 7.86 -25.81 -0.20 -2.92 16 16 C 0.16 3.51 7.51 -2.97 -0.02 3.49 16 17 N -0.60 -14.06 3.57 -170.75 -0.61 -14.67 16 18 C -0.22 -5.71 10.51 -15.06 -0.16 -5.86 16 19 H 0.08 1.88 7.80 -52.49 -0.41 1.47 16 20 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 21 N -0.92 -26.36 11.38 55.49 0.63 -25.73 16 22 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 26 C -0.15 -1.49 6.40 -26.72 -0.17 -1.66 16 27 C 0.52 6.34 6.60 -10.83 -0.07 6.26 16 28 O -0.53 -8.06 16.46 5.55 0.09 -7.96 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.64 6.13 -51.93 -0.32 0.32 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.79 7.92 -51.93 -0.41 0.38 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.03 7.01 -51.93 -0.36 0.67 16 39 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.40 5.62 8.47 -40.82 -0.35 5.27 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 44 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 45 H 0.07 1.83 7.16 -51.93 -0.37 1.46 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.11 1.09 7.89 -51.93 -0.41 0.68 16 LS Contribution 394.64 15.07 5.95 5.95 Total: -1.00 -32.20 394.64 -9.32 -41.52 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -8.53 Total: 3.45 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -1.11 Total: 8.07 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.79 Total: -58.01 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.18 Total: -17.29 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.20 -9.32 -41.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038332115.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.407 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds