Wall clock time and date at job start Fri Apr 10 2020 18:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 C 1.53008 * 109.47092 * 119.99930 * 2 1 3 5 5 N 1.46490 * 109.46949 * 64.99685 * 4 2 1 6 6 C 1.46772 * 124.34831 * 90.00773 * 5 4 2 7 7 C 1.54483 * 105.46994 * 197.03463 * 6 5 4 8 8 H 1.09000 * 110.96836 * 92.73927 * 7 6 5 9 9 C 1.50703 * 110.96556 * 216.46186 * 7 6 5 10 10 O 1.21279 * 119.99926 * 356.90934 * 9 7 6 11 11 N 1.34775 * 119.99773 * 176.91333 * 9 7 6 12 12 C 1.46504 * 119.99531 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.46883 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.96182 * 306.68448 * 13 12 11 15 15 C 1.53937 * 113.76864 * 175.00061 * 13 12 11 16 16 C 1.53947 * 86.29361 * 222.09460 * 15 13 12 17 17 N 1.47583 * 86.11496 * 23.60822 * 16 15 13 18 18 C 1.36938 * 134.49525 * 155.35841 * 17 16 15 19 19 H 1.07998 * 119.99974 * 179.97438 * 18 17 16 20 20 C 1.38810 * 119.99598 * 0.02562 * 18 17 16 21 21 N 1.31616 * 120.00315 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99590 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47112 * 60.00331 * 22 20 18 24 24 H 1.48502 * 109.46929 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47190 * 299.99952 * 22 20 18 26 26 C 1.54621 * 101.80022 * 334.59787 * 7 6 5 27 27 C 1.34418 * 124.35537 * 270.02478 * 5 4 2 28 28 O 1.21287 * 124.93470 * 359.60304 * 27 5 4 29 29 H 1.09000 * 109.46974 * 59.99983 * 1 2 3 30 30 H 1.09000 * 109.47258 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47204 * 300.00669 * 1 2 3 32 32 H 1.08994 * 109.47348 * 239.99869 * 2 1 3 33 33 H 1.09002 * 109.47149 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47076 * 299.99359 * 3 2 1 35 35 H 1.08996 * 109.47584 * 59.99936 * 3 2 1 36 36 H 1.09002 * 109.46374 * 304.99850 * 4 2 1 37 37 H 1.08998 * 109.46691 * 185.00529 * 4 2 1 38 38 H 1.08989 * 110.24680 * 78.02869 * 6 5 4 39 39 H 1.09009 * 110.24105 * 316.03149 * 6 5 4 40 40 H 0.96992 * 120.00503 * 359.97438 * 11 9 7 41 41 H 1.09001 * 109.46891 * 60.00097 * 12 11 9 42 42 H 1.08993 * 109.47378 * 299.99469 * 12 11 9 43 43 H 1.08999 * 113.74218 * 336.43980 * 15 13 12 44 44 H 1.09008 * 113.74080 * 107.64098 * 15 13 12 45 45 H 1.08993 * 113.77115 * 137.90934 * 16 15 13 46 46 H 1.09004 * 113.76864 * 269.31379 * 16 15 13 47 47 H 0.97003 * 120.00164 * 180.02562 * 21 20 18 48 48 H 1.09000 * 110.48558 * 143.45979 * 26 7 6 49 49 H 1.09004 * 110.48816 * 266.10317 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 -2.1327 1.1907 6 6 2.4687 -3.1912 0.5845 7 6 1.5056 -4.3786 0.3631 8 1 1.0731 -4.3488 -0.6369 9 6 2.2037 -5.6918 0.6069 10 8 3.3860 -5.7092 0.8764 11 7 1.5140 -6.8468 0.5253 12 6 2.1928 -8.1234 0.7618 13 6 1.1907 -9.2697 0.6095 14 1 0.3016 -9.1420 1.2269 15 6 1.8261 -10.6676 0.7178 16 6 0.9231 -11.0601 -0.4656 17 7 0.8982 -9.6214 -0.7937 18 6 0.6880 -8.9019 -1.9397 19 1 0.7236 -7.8228 -1.9139 20 6 0.4282 -9.5595 -3.1342 21 7 0.3834 -10.8745 -3.1653 22 14 0.1409 -8.5778 -4.6973 23 1 1.3419 -7.7565 -4.9939 24 1 -0.1141 -9.5083 -5.8263 25 1 -1.0342 -7.6885 -4.5144 26 6 0.4278 -4.1166 1.4403 27 6 0.5032 -2.6250 1.6847 28 8 -0.3498 -1.9688 2.2441 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6053 -0.2616 2.1370 37 1 3.1263 -0.6442 1.2952 38 1 3.2742 -3.4796 1.2597 39 1 2.8768 -2.8538 -0.3683 40 1 0.5684 -6.8330 0.3101 41 1 2.6058 -8.1339 1.7705 42 1 2.9984 -8.2461 0.0380 43 1 2.8902 -10.6855 0.4827 44 1 1.5871 -11.1876 1.6457 45 1 1.4232 -11.6731 -1.2154 46 1 -0.0459 -11.4591 -0.1655 47 1 0.2022 -11.3340 -4.0001 48 1 -0.5586 -4.3934 1.0682 49 1 0.6597 -4.6648 2.3535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038332115.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:50 Heat of formation + Delta-G solvation = -47.781265 kcal Electronic energy + Delta-G solvation = -28026.293076 eV Core-core repulsion = 24181.826626 eV Total energy + Delta-G solvation = -3844.466450 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.93837 -40.50287 -39.51218 -37.62862 -36.65701 -35.52015 -34.17313 -32.96661 -29.90193 -29.38964 -28.66845 -28.05805 -27.18778 -25.25466 -24.58899 -23.18791 -21.50087 -21.34735 -20.70573 -20.34599 -18.88630 -18.18199 -18.04073 -17.05999 -17.00149 -16.82388 -16.45688 -16.14065 -15.73101 -15.51218 -15.32909 -15.01758 -14.90431 -14.72659 -14.48118 -14.18088 -13.89442 -13.56655 -13.40957 -13.23114 -13.08616 -12.91497 -12.88732 -12.66105 -12.59169 -12.54765 -12.48541 -12.29518 -12.05274 -11.87404 -11.81255 -11.64229 -11.50218 -11.36034 -11.05986 -10.79078 -10.67565 -9.99119 -9.70915 -8.85028 -7.83078 -5.14685 1.47162 1.48378 1.49200 1.54651 1.59503 1.89836 2.26094 2.50995 3.17851 3.31000 3.38601 3.44019 3.74536 3.83203 3.87943 3.95723 4.02529 4.12154 4.14294 4.24098 4.40505 4.46032 4.52456 4.56642 4.63611 4.68980 4.74700 4.75852 4.78346 4.81285 4.91515 4.91924 4.96173 5.02695 5.09464 5.15432 5.19272 5.34232 5.37761 5.38202 5.48142 5.56267 5.64996 5.78762 6.01595 6.04878 6.57230 6.98525 7.09207 7.22791 7.69895 8.64439 9.33963 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.003028 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.098452 B = 9245.670838 C =10359.244357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.125 3.875 5 N -0.612 5.612 6 C 0.122 3.878 7 C -0.115 4.115 8 H 0.134 0.866 9 C 0.526 3.474 10 O -0.576 6.576 11 N -0.708 5.708 12 C 0.132 3.868 13 C 0.133 3.867 14 H 0.072 0.928 15 C -0.132 4.132 16 C 0.148 3.852 17 N -0.630 5.630 18 C -0.211 4.211 19 H 0.091 0.909 20 C -0.073 4.073 21 N -0.957 5.957 22 Si 0.966 3.034 23 H -0.280 1.280 24 H -0.302 1.302 25 H -0.274 1.274 26 C -0.139 4.139 27 C 0.515 3.485 28 O -0.566 6.566 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.410 0.590 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.037 0.963 46 H 0.020 0.980 47 H 0.244 0.756 48 H 0.125 0.875 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 18.278 9.571 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.004 3.996 5 N -0.344 5.344 6 C -0.001 4.001 7 C -0.137 4.137 8 H 0.152 0.848 9 C 0.312 3.688 10 O -0.457 6.457 11 N -0.357 5.357 12 C 0.008 3.992 13 C 0.027 3.973 14 H 0.089 0.911 15 C -0.171 4.171 16 C 0.022 3.978 17 N -0.356 5.356 18 C -0.340 4.340 19 H 0.108 0.892 20 C -0.265 4.265 21 N -0.607 5.607 22 Si 0.795 3.205 23 H -0.207 1.207 24 H -0.229 1.229 25 H -0.200 1.200 26 C -0.179 4.179 27 C 0.304 3.696 28 O -0.445 6.445 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.245 0.755 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.055 0.945 46 H 0.038 0.962 47 H 0.053 0.947 48 H 0.143 0.857 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.969 18.721 9.735 21.471 hybrid contribution -0.878 -0.122 -1.380 1.640 sum 3.091 18.599 8.356 20.623 Atomic orbital electron populations 1.21762 0.95798 1.00761 1.01272 1.21515 0.95667 0.97488 0.98280 1.21741 1.01684 0.94088 1.02342 1.21663 1.01309 0.78085 0.98541 1.48389 1.19630 1.08675 1.57719 1.21976 0.92899 0.84798 1.00441 1.22183 0.96854 0.91818 1.02820 0.84779 1.20381 0.86653 0.85694 0.76051 1.90680 1.16898 1.87881 1.50197 1.45918 1.14079 1.05655 1.70073 1.21545 0.95173 0.81943 1.00586 1.22667 0.95412 0.93505 0.85695 0.91094 1.23569 0.99546 0.95326 0.98643 1.22168 0.95272 0.87022 0.93290 1.46437 1.83077 1.03246 1.02846 1.19313 1.38719 0.90658 0.85272 0.89182 1.25524 1.03877 0.96512 1.00634 1.69998 1.57557 1.07462 1.25691 0.85333 0.78203 0.77372 0.79569 1.20676 1.22921 1.20028 1.22348 1.01517 0.93434 1.00575 1.21039 0.81077 0.90457 0.77025 1.90709 1.42828 1.66256 1.44746 0.92303 0.94623 0.93622 0.90532 0.91229 0.91958 0.92536 0.90973 0.88060 0.89805 0.88105 0.75452 0.90008 0.93749 0.90373 0.88959 0.94468 0.96171 0.94722 0.85721 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.34 71.98 0.60 -2.01 16 2 C -0.11 -1.61 3.13 -10.79 -0.03 -1.64 16 3 C -0.14 -1.54 9.19 71.98 0.66 -0.88 16 4 C 0.13 1.97 5.39 86.38 0.47 2.44 16 5 N -0.61 -11.54 2.78 -817.89 -2.27 -13.81 16 6 C 0.12 2.16 6.69 86.83 0.58 2.74 16 7 C -0.12 -2.18 3.54 -10.48 -0.04 -2.21 16 8 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 9 C 0.53 13.71 7.06 87.66 0.62 14.33 16 10 O -0.58 -18.85 15.53 -3.03 -0.05 -18.90 16 11 N -0.71 -19.15 5.52 -463.05 -2.55 -21.71 16 12 C 0.13 4.08 5.54 86.38 0.48 4.56 16 13 C 0.13 4.47 4.33 45.09 0.20 4.67 16 14 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 15 C -0.13 -4.31 7.86 31.25 0.25 -4.06 16 16 C 0.15 6.57 7.51 86.48 0.65 7.22 16 17 N -0.63 -28.89 3.57 -694.14 -2.48 -31.37 16 18 C -0.21 -10.73 10.51 84.03 0.88 -9.85 16 19 H 0.09 4.22 7.80 -2.91 -0.02 4.20 16 20 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 21 N -0.96 -56.48 11.38 21.65 0.25 -56.23 16 22 Si 0.97 44.10 29.55 68.60 2.03 46.13 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 C -0.14 -2.54 6.40 30.60 0.20 -2.34 16 27 C 0.52 11.88 6.60 87.92 0.58 12.46 16 28 O -0.57 -17.04 16.46 -3.05 -0.05 -17.09 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.03 0.80 6.13 -2.39 -0.01 0.79 16 31 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.07 1.31 7.92 -2.39 -0.02 1.29 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.70 7.01 -2.39 -0.02 1.68 16 39 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.41 10.26 8.47 -92.71 -0.79 9.47 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.08 2.55 8.10 -2.39 -0.02 2.53 16 44 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 45 H 0.04 1.91 7.16 -2.39 -0.02 1.89 16 46 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 47 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 48 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.11 2.01 7.89 -2.38 -0.02 1.99 16 Total: -1.00 -71.07 394.64 1.56 -69.51 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.14 Total: 21.57 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: 6.55 Total: 21.90 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -7.06 Total: -123.12 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.10 Total: -35.98 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -71.07 1.56 -69.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038332115.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.725 kcal (2) G-P(sol) polarization free energy of solvation -71.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds