Wall clock time and date at job start Fri Apr 10 2020 18:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99850 * 2 1 4 4 H 1.48498 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46674 * 299.99720 * 3 2 1 6 6 H 1.48496 * 109.47175 * 59.99620 * 3 2 1 7 7 C 1.38816 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00103 * 0.02562 * 7 2 1 10 10 C 1.48151 * 126.39391 * 0.02562 * 9 7 2 11 11 C 1.55302 * 107.04275 * 184.96713 * 10 9 7 12 12 C 1.53706 * 101.81303 * 22.44987 * 11 10 9 13 13 H 1.08997 * 111.10652 * 79.36178 * 12 11 10 14 14 C 1.51975 * 115.00444 * 206.54203 * 12 11 10 15 15 C 1.53886 * 107.28934 * 175.44291 * 14 12 11 16 16 N 1.46597 * 110.71108 * 308.19303 * 15 14 12 17 17 C 1.34774 * 119.74722 * 227.73944 * 16 15 14 18 18 O 1.21281 * 119.99835 * 180.02562 * 17 16 15 19 19 C 1.50699 * 120.00506 * 0.02562 * 17 16 15 20 20 N 1.46897 * 109.47415 * 180.02562 * 19 17 16 21 21 C 1.47011 * 111.00070 * 293.63244 * 20 19 17 22 22 C 1.53091 * 109.25941 * 177.60738 * 21 20 19 23 23 O 1.43017 * 109.26070 * 56.85204 * 22 21 20 24 24 C 1.43016 * 113.73527 * 301.33208 * 23 22 21 25 25 C 1.47019 * 110.99901 * 170.00040 * 20 19 17 26 26 C 1.47792 * 120.49842 * 47.75812 * 16 15 14 27 27 C 1.45264 * 126.31146 * 179.97438 * 9 7 2 28 28 H 1.09001 * 108.98169 * 266.38427 * 27 9 7 29 29 H 0.96996 * 120.00720 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.91967 * 65.62677 * 10 9 7 31 31 H 1.08999 * 110.09583 * 304.41301 * 10 9 7 32 32 H 1.09000 * 110.96386 * 264.32097 * 11 10 9 33 33 H 1.08995 * 110.99142 * 140.58899 * 11 10 9 34 34 H 1.09002 * 109.89628 * 55.99494 * 14 12 11 35 35 H 1.09008 * 109.88913 * 294.88528 * 14 12 11 36 36 H 1.08997 * 109.23220 * 187.87100 * 15 14 12 37 37 H 1.09002 * 109.19412 * 68.48674 * 15 14 12 38 38 H 1.09002 * 109.47069 * 300.00500 * 19 17 16 39 39 H 1.09000 * 109.47032 * 59.99787 * 19 17 16 40 40 H 1.08998 * 109.50789 * 297.54788 * 21 20 19 41 41 H 1.08996 * 109.50469 * 57.67248 * 21 20 19 42 42 H 1.08998 * 109.51050 * 296.91548 * 22 21 20 43 43 H 1.09000 * 109.54414 * 176.81064 * 22 21 20 44 44 H 1.08995 * 109.50615 * 298.72992 * 24 23 22 45 45 H 1.09004 * 109.54471 * 178.62484 * 24 23 22 46 46 H 1.08993 * 109.50687 * 302.32485 * 25 20 19 47 47 H 1.09005 * 109.50907 * 62.45864 * 25 20 19 48 48 H 1.09002 * 110.06559 * 67.94534 * 26 16 15 49 49 H 1.09003 * 110.06613 * 189.40375 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1467 -2.5532 -0.0005 11 6 -0.4343 -4.0739 0.1285 12 6 0.8678 -4.5876 0.7634 13 1 0.8845 -4.3942 1.8360 14 6 1.1974 -6.0412 0.4664 15 6 2.5769 -6.3325 1.0831 16 7 3.5600 -5.3356 0.6489 17 6 4.7634 -5.7371 0.1941 18 8 5.5804 -4.9162 -0.1659 19 6 5.0941 -7.2061 0.1329 20 7 6.4544 -7.3803 -0.3936 21 6 6.5349 -6.9517 -1.7976 22 6 7.9785 -7.0937 -2.2869 23 8 8.4062 -8.4467 -2.1086 24 6 8.3413 -8.8970 -0.7528 25 6 6.9013 -8.7733 -0.2478 26 6 3.2415 -3.8935 0.7064 27 6 1.9093 -3.7183 0.0005 28 1 1.9923 -4.0691 -1.0282 29 1 -0.4851 0.8399 -0.0004 30 1 -0.5621 -2.1747 -0.9345 31 1 -0.5839 -2.0196 0.8434 32 1 -0.5949 -4.5248 -0.8508 33 1 -1.2859 -4.2559 0.7839 34 1 1.2317 -6.2010 -0.6113 35 1 0.4459 -6.6910 0.9150 36 1 2.9079 -7.3229 0.7707 37 1 2.4961 -6.3074 2.1699 38 1 5.0346 -7.6339 1.1336 39 1 4.3835 -7.7115 -0.5211 40 1 5.8810 -7.5758 -2.4067 41 1 6.2239 -5.9102 -1.8785 42 1 8.6244 -6.4292 -1.7131 43 1 8.0329 -6.8310 -3.3434 44 1 8.9978 -8.2850 -0.1342 45 1 8.6577 -9.9387 -0.6990 46 1 6.8579 -9.0614 0.8025 47 1 6.2534 -9.4266 -0.8322 48 1 3.1603 -3.5696 1.7440 49 1 4.0140 -3.3192 0.1951 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042021046.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:31 Heat of formation + Delta-G solvation = -30.585143 kcal Electronic energy + Delta-G solvation = -28914.731784 eV Core-core repulsion = 25071.011014 eV Total energy + Delta-G solvation = -3843.720770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.46510 -39.48317 -38.17938 -35.68941 -35.34044 -32.91484 -31.39375 -31.28606 -30.28648 -28.83930 -28.30420 -25.35645 -24.68322 -24.21162 -23.30307 -22.26584 -20.70600 -20.13754 -19.73558 -18.87455 -17.24875 -16.81649 -16.38553 -16.26261 -15.73628 -15.60466 -15.24268 -14.87842 -14.77201 -14.46622 -14.33104 -14.00806 -13.80017 -13.60392 -13.19259 -12.89049 -12.81527 -12.45687 -12.28769 -12.23263 -11.90238 -11.61949 -11.55927 -11.40098 -11.33316 -10.97047 -10.81761 -10.78253 -10.73546 -10.12927 -10.03687 -9.97226 -9.88582 -9.67502 -9.52771 -9.45082 -8.63898 -8.58879 -8.40535 -6.86322 -5.72654 -3.06491 2.75160 2.94098 3.41061 3.47767 3.50084 3.57725 3.71848 4.44538 4.50683 4.63665 4.74958 4.82863 4.87641 4.91683 4.95979 5.02652 5.12206 5.13498 5.18128 5.32267 5.36314 5.44575 5.46328 5.54634 5.60436 5.65627 5.74447 5.77178 5.80358 5.89322 5.98887 6.04976 6.10744 6.14349 6.36997 6.45624 6.53879 6.57341 6.68584 6.72648 6.75490 6.93982 7.03900 7.53880 7.56539 7.61216 7.80687 8.22331 8.35805 9.18536 9.81639 10.47737 11.39746 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.003215 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.908271 B = 8706.155550 C = 9953.833484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.080 0.920 9 N -0.592 5.592 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.113 4.113 13 H 0.077 0.923 14 C -0.120 4.120 15 C 0.109 3.891 16 N -0.607 5.607 17 C 0.511 3.489 18 O -0.524 6.524 19 C 0.038 3.962 20 N -0.520 5.520 21 C 0.012 3.988 22 C 0.066 3.934 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.018 3.982 26 C 0.118 3.882 27 C 0.158 3.842 28 H 0.023 0.977 29 H 0.252 0.748 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.108 0.892 42 H 0.062 0.938 43 H 0.098 0.902 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.043 0.957 48 H 0.069 0.931 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.805 -20.728 1.309 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.356 4.356 8 H 0.098 0.902 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.177 4.177 12 C -0.133 4.133 13 H 0.095 0.905 14 C -0.159 4.159 15 C -0.015 4.015 16 N -0.342 5.342 17 C 0.298 3.702 18 O -0.400 6.400 19 C -0.093 4.093 20 N -0.245 5.245 21 C -0.115 4.115 22 C -0.011 4.011 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.111 4.111 26 C -0.004 4.004 27 C 0.049 3.951 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.126 0.874 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.104 0.896 47 H 0.061 0.939 48 H 0.088 0.912 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.581 -19.837 1.232 21.649 hybrid contribution -0.508 0.517 -0.136 0.737 sum 8.074 -19.321 1.096 20.968 Atomic orbital electron populations 1.69946 1.04907 1.24975 1.57074 1.24785 0.95679 0.97674 1.02126 0.86073 0.78946 0.83782 0.77216 1.20341 1.21747 1.21756 1.19098 0.90474 0.82264 1.43774 0.90200 1.44130 1.01660 0.99272 1.86660 1.21536 0.83682 0.88459 1.01011 1.22732 0.96006 0.99692 0.99230 1.22309 0.97434 0.93348 1.00170 0.90461 1.21807 0.95291 0.97596 1.01158 1.21722 0.89485 0.90976 0.99293 1.48297 1.13929 1.07912 1.64084 1.20371 0.81685 0.90576 0.77570 1.90668 1.47338 1.54651 1.47345 1.22032 0.90365 0.94838 1.02031 1.61859 1.22595 1.20510 1.19576 1.22981 0.97799 1.03586 0.87158 1.22663 0.93726 0.83142 1.01527 1.87962 1.86801 1.29277 1.26745 1.22624 0.94883 1.00261 0.83441 1.22823 0.97484 0.88777 1.01967 1.21697 0.98989 0.78352 1.01380 1.20970 0.91046 0.87606 0.95497 0.96016 0.93806 0.94461 0.92616 0.92612 0.92235 0.91500 0.90857 0.90667 0.91588 0.87902 0.91854 0.94467 0.87385 0.91925 0.88389 0.92159 0.88504 0.89554 0.93906 0.91235 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 10.44 55.49 0.58 -26.34 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.23 -6.30 9.87 -15.06 -0.15 -6.45 16 8 H 0.08 2.18 7.41 -52.49 -0.39 1.79 16 9 N -0.59 -14.81 3.34 -162.92 -0.54 -15.36 16 10 C 0.18 4.21 5.45 -1.91 -0.01 4.20 16 11 C -0.14 -2.46 6.54 -25.14 -0.16 -2.63 16 12 C -0.11 -1.85 2.61 -89.37 -0.23 -2.08 16 13 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.12 -1.45 5.73 -26.79 -0.15 -1.60 16 15 C 0.11 1.19 6.22 -3.53 -0.02 1.17 16 16 N -0.61 -8.98 3.01 -172.75 -0.52 -9.50 16 17 C 0.51 7.70 7.38 -10.99 -0.08 7.62 16 18 O -0.52 -9.94 13.72 5.56 0.08 -9.87 16 19 C 0.04 0.41 3.78 -4.98 -0.02 0.40 16 20 N -0.52 -6.05 4.46 -235.76 -1.05 -7.11 16 21 C 0.01 0.15 5.29 -3.72 -0.02 0.13 16 22 C 0.07 0.73 7.01 37.20 0.26 0.99 16 23 O -0.39 -4.42 10.83 -35.23 -0.38 -4.80 16 24 C 0.07 0.57 7.01 37.21 0.26 0.83 16 25 C 0.02 0.15 5.64 -3.71 -0.02 0.13 16 26 C 0.12 2.21 5.69 -3.95 -0.02 2.19 16 27 C 0.16 3.19 2.75 -67.81 -0.19 3.00 16 28 H 0.02 0.48 7.95 -51.93 -0.41 0.07 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 31 H 0.06 1.46 7.21 -51.93 -0.37 1.09 16 32 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.84 8.00 -51.93 -0.42 0.42 16 35 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.07 0.61 5.84 -51.93 -0.30 0.30 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.88 7.89 -51.93 -0.41 0.47 16 39 H 0.06 0.60 7.53 -51.93 -0.39 0.21 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.11 1.58 5.88 -51.93 -0.31 1.28 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 47 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 49 H 0.09 1.96 6.76 -51.93 -0.35 1.61 16 LS Contribution 369.45 15.07 5.57 5.57 Total: -1.00 -32.74 369.45 -10.34 -43.08 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -8.38 Total: -0.60 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -0.66 Total: 7.63 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -1.54 Total: -58.31 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.31 Total: -14.67 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.74 -10.34 -43.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042021046.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.492 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds