Wall clock time and date at job start Fri Apr 10 2020 18:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 120.00121 * 2 1 4 4 O 1.21279 * 120.00134 * 185.29394 * 3 2 1 5 5 C 1.50699 * 119.99841 * 5.30198 * 3 2 1 6 6 H 1.09002 * 110.86392 * 36.02285 * 5 3 2 7 7 C 1.54629 * 110.96791 * 272.23443 * 5 3 2 8 8 C 1.51340 * 104.16906 * 217.11056 * 7 5 3 9 9 O 1.21281 * 124.92600 * 196.25536 * 8 7 5 10 10 N 1.34422 * 110.12968 * 16.20344 * 8 7 5 11 11 C 1.46499 * 124.34967 * 180.41563 * 10 8 7 12 12 C 1.52995 * 109.47128 * 240.02523 * 11 10 8 13 13 C 1.53004 * 109.46976 * 0.02562 * 11 10 8 14 14 C 1.52998 * 109.46983 * 120.02183 * 11 10 8 15 15 C 1.46762 * 111.29830 * 0.43695 * 10 8 7 16 16 C 1.46503 * 119.99881 * 179.97438 * 2 1 3 17 17 C 1.53937 * 113.73898 * 38.63661 * 16 2 1 18 18 N 1.47811 * 86.03564 * 222.08238 * 17 16 2 19 19 C 1.36941 * 134.45737 * 204.64211 * 18 17 16 20 20 H 1.08003 * 119.99594 * 186.68019 * 19 18 17 21 21 C 1.38804 * 120.00114 * 6.68941 * 19 18 17 22 22 N 1.31627 * 119.99959 * 4.93977 * 21 19 18 23 23 Si 1.86804 * 120.00273 * 184.94346 * 21 19 18 24 24 H 1.48491 * 109.47018 * 94.83985 * 23 21 19 25 25 H 1.48497 * 109.46893 * 214.84195 * 23 21 19 26 26 H 1.48497 * 109.46861 * 334.83875 * 23 21 19 27 27 C 1.47582 * 91.04943 * 24.55033 * 18 17 16 28 28 H 1.08995 * 109.47151 * 204.36512 * 1 2 3 29 29 H 1.08998 * 109.46790 * 84.36117 * 1 2 3 30 30 H 1.09002 * 109.46939 * 324.36829 * 1 2 3 31 31 H 1.09004 * 110.48714 * 335.76723 * 7 5 3 32 32 H 1.09001 * 110.48594 * 98.40345 * 7 5 3 33 33 H 1.08992 * 109.47391 * 60.00181 * 12 11 10 34 34 H 1.08998 * 109.46986 * 180.02562 * 12 11 10 35 35 H 1.08999 * 109.46724 * 299.99315 * 12 11 10 36 36 H 1.09003 * 109.47431 * 59.99997 * 13 11 10 37 37 H 1.09001 * 109.46703 * 180.02562 * 13 11 10 38 38 H 1.09006 * 109.47054 * 299.99642 * 13 11 10 39 39 H 1.09000 * 109.47306 * 59.99794 * 14 11 10 40 40 H 1.09000 * 109.47341 * 180.02562 * 14 11 10 41 41 H 1.09003 * 109.47316 * 299.99936 * 14 11 10 42 42 H 1.09005 * 110.23995 * 223.98599 * 15 10 8 43 43 H 1.09000 * 110.24526 * 101.99088 * 15 10 8 44 44 H 1.09002 * 112.93777 * 170.22350 * 16 2 1 45 45 H 1.09008 * 113.77462 * 336.34494 * 17 16 2 46 46 H 1.08996 * 113.77359 * 107.74711 * 17 16 2 47 47 H 0.97004 * 119.99858 * 180.02562 * 22 21 19 48 48 H 1.09002 * 113.76683 * 221.15195 * 27 18 17 49 49 H 1.08998 * 113.87378 * 89.77302 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3478 1.1694 -0.0969 5 6 1.3903 2.4695 0.1206 6 1 0.5334 2.3645 0.7862 7 6 0.9513 2.9861 -1.2691 8 6 1.1126 4.4879 -1.1740 9 8 0.6193 5.2891 -1.9393 10 7 1.8810 4.8046 -0.1175 11 6 2.2302 6.1737 0.2698 12 6 3.7507 6.3408 0.2370 13 6 1.5875 7.1598 -0.7077 14 6 1.7170 6.4501 1.6844 15 6 2.3254 3.6027 0.5978 16 6 2.1975 -1.2688 0.0006 17 6 1.5541 -2.3562 -0.8788 18 7 1.8614 -3.2876 0.2271 19 6 2.0642 -4.6390 0.3144 20 1 2.1733 -5.1073 1.2815 21 6 2.1299 -5.4070 -0.8399 22 7 2.0948 -4.8254 -2.0202 23 14 2.2680 -7.2660 -0.7185 24 1 0.9149 -7.8701 -0.8142 25 1 3.1160 -7.7728 -1.8273 26 1 2.8831 -7.6327 0.5824 27 6 1.8640 -2.1764 1.1983 28 1 -0.3633 -0.9361 0.4239 29 1 -0.3633 0.1010 -1.0227 30 1 -0.3633 0.8353 0.5987 31 1 1.5976 2.5817 -2.0481 32 1 -0.0893 2.7250 -1.4620 33 1 4.1162 6.1439 -0.7707 34 1 4.0105 7.3592 0.5256 35 1 4.2084 5.6382 0.9334 36 1 0.5043 7.0408 -0.6843 37 1 1.8478 8.1784 -0.4197 38 1 1.9531 6.9629 -1.7155 39 1 2.1748 5.7475 2.3807 40 1 1.9765 7.4688 1.9724 41 1 0.6338 6.3311 1.7077 42 1 2.2260 3.7458 1.6738 43 1 3.3594 3.3718 0.3412 44 1 3.2666 -1.1421 -0.1699 45 1 0.4869 -2.2108 -1.0470 46 1 2.1061 -2.5635 -1.7955 47 1 2.1403 -5.3622 -2.8270 48 1 2.6630 -2.2405 1.9370 49 1 0.8890 -1.9768 1.6429 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042842247.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:06 Heat of formation + Delta-G solvation = -21.512043 kcal Electronic energy + Delta-G solvation = -28427.292242 eV Core-core repulsion = 24583.964911 eV Total energy + Delta-G solvation = -3843.327331 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.15368 -40.93991 -39.29950 -37.76914 -36.51560 -35.90972 -34.00240 -31.60909 -29.59135 -28.96858 -28.22441 -28.08308 -27.83688 -26.58801 -25.65876 -23.76458 -22.44507 -21.04099 -19.81314 -19.69024 -18.93182 -18.56368 -17.60952 -17.36011 -16.96264 -16.63941 -16.36869 -16.04128 -15.69129 -15.22299 -15.00156 -14.79972 -14.70357 -14.63433 -14.37533 -14.01815 -13.87468 -13.58383 -13.27272 -13.25833 -13.16329 -13.05082 -13.03845 -12.96152 -12.79734 -12.61500 -12.53296 -12.41562 -12.36016 -12.08744 -11.96437 -11.93181 -11.91711 -11.54690 -10.90813 -10.87803 -10.44379 -9.67368 -9.53374 -8.92863 -7.91182 -5.27956 1.45750 1.46478 1.47899 1.56772 1.57245 1.81911 2.06892 2.48371 3.14316 3.27052 3.37975 3.42284 3.63257 3.79422 3.87204 3.92793 3.94476 4.03250 4.10346 4.31211 4.39050 4.47211 4.50366 4.57295 4.68184 4.71133 4.72213 4.73392 4.75384 4.81244 4.85359 4.88391 4.93877 4.94371 4.97737 5.05565 5.19582 5.20532 5.28345 5.30997 5.38442 5.49570 5.68480 5.72645 5.92750 6.12012 6.47375 6.88754 7.13361 7.16118 7.58213 8.51560 9.23611 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.033442 B = 0.002421 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.059773 B =11563.153705 C =11788.602780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.594 5.594 3 C 0.523 3.477 4 O -0.580 6.580 5 C -0.108 4.108 6 H 0.151 0.849 7 C -0.137 4.137 8 C 0.516 3.484 9 O -0.563 6.563 10 N -0.604 5.604 11 C 0.164 3.836 12 C -0.155 4.155 13 C -0.133 4.133 14 C -0.151 4.151 15 C 0.116 3.884 16 C 0.118 3.882 17 C 0.148 3.852 18 N -0.638 5.638 19 C -0.233 4.233 20 H 0.085 0.915 21 C -0.066 4.066 22 N -0.950 5.950 23 Si 0.980 3.020 24 H -0.286 1.286 25 H -0.296 1.296 26 H -0.266 1.266 27 C 0.117 3.883 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.132 0.868 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.110 0.890 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.041 0.959 46 H 0.044 0.956 47 H 0.249 0.751 48 H 0.049 0.951 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.410 23.592 9.201 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.325 5.325 3 C 0.312 3.688 4 O -0.460 6.460 5 C -0.129 4.129 6 H 0.168 0.832 7 C -0.177 4.177 8 C 0.305 3.695 9 O -0.443 6.443 10 N -0.338 5.338 11 C 0.082 3.918 12 C -0.213 4.213 13 C -0.191 4.191 14 C -0.209 4.209 15 C -0.007 4.007 16 C 0.012 3.988 17 C 0.022 3.978 18 N -0.365 5.365 19 C -0.362 4.362 20 H 0.103 0.897 21 C -0.259 4.259 22 N -0.599 5.599 23 Si 0.808 3.192 24 H -0.212 1.212 25 H -0.223 1.223 26 H -0.191 1.191 27 C -0.009 4.009 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.150 0.850 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.128 0.872 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.965 23.769 8.698 25.620 hybrid contribution 0.260 -1.522 -0.614 1.662 sum -3.705 22.248 8.084 23.959 Atomic orbital electron populations 1.22143 0.77177 1.04742 1.03428 1.47963 1.08417 1.04706 1.71433 1.20630 0.87292 0.85613 0.75286 1.90691 1.16210 1.87575 1.51507 1.22238 1.00499 0.90859 0.99322 0.83165 1.22315 1.06222 0.92227 0.96953 1.21006 0.77427 0.91133 0.79971 1.90716 1.51862 1.56161 1.45584 1.48554 1.49636 1.06925 1.28652 1.20701 0.95579 0.79270 0.96266 1.22175 0.93594 1.03689 1.01858 1.22003 1.00710 0.98331 0.98031 1.22142 1.01447 1.03520 0.93805 1.22008 0.98379 0.81743 0.98576 1.23255 0.96761 0.81154 0.97591 1.22694 0.96898 0.85000 0.93191 1.45965 1.82091 1.02442 1.05963 1.19367 1.41716 0.81861 0.93218 0.89685 1.25668 1.02663 1.02695 0.94899 1.70014 1.57643 1.35194 0.97038 0.85035 0.77307 0.79570 0.77269 1.21248 1.22285 1.19088 1.23096 0.99444 0.85223 0.93139 0.90942 0.91374 0.87235 0.88711 0.84984 0.93875 0.89366 0.91604 0.92872 0.90293 0.93859 0.91111 0.89640 0.92418 0.87223 0.90799 0.89198 0.94171 0.93807 0.94224 0.93241 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 8.93 127.77 1.14 2.38 16 2 N -0.59 -16.10 3.09 -828.38 -2.56 -18.66 16 3 C 0.52 13.63 6.80 87.66 0.60 14.23 16 4 O -0.58 -20.30 15.08 -3.02 -0.05 -20.34 16 5 C -0.11 -1.77 2.72 -10.48 -0.03 -1.80 16 6 H 0.15 1.39 6.38 -2.39 -0.02 1.37 16 7 C -0.14 -2.49 6.41 30.61 0.20 -2.29 16 8 C 0.52 11.63 7.84 87.92 0.69 12.32 16 9 O -0.56 -16.43 13.99 -3.03 -0.04 -16.47 16 10 N -0.60 -11.05 2.76 -770.96 -2.13 -13.18 16 11 C 0.16 2.55 1.20 3.60 0.00 2.55 16 12 C -0.16 -2.16 8.54 71.98 0.61 -1.55 16 13 C -0.13 -2.43 7.00 71.98 0.50 -1.93 16 14 C -0.15 -1.57 8.49 71.98 0.61 -0.96 16 15 C 0.12 1.91 6.09 86.83 0.53 2.44 16 16 C 0.12 4.41 4.41 46.75 0.21 4.62 16 17 C 0.15 6.79 7.18 86.44 0.62 7.41 16 18 N -0.64 -31.92 3.69 -716.81 -2.65 -34.57 16 19 C -0.23 -12.89 10.69 84.03 0.90 -11.99 16 20 H 0.09 4.48 7.83 -2.91 -0.02 4.45 16 21 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 22 N -0.95 -56.99 11.28 21.65 0.24 -56.75 16 23 Si 0.98 45.25 29.56 68.60 2.03 47.28 16 24 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 C 0.12 4.46 8.43 86.48 0.73 5.19 16 28 H 0.07 1.55 6.14 -2.39 -0.01 1.54 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.11 1.09 6.09 -2.39 -0.01 1.07 16 31 H 0.09 2.06 7.89 -2.39 -0.02 2.05 16 32 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.87 7.90 -2.39 -0.02 0.85 16 36 H 0.05 1.13 7.08 -2.39 -0.02 1.12 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.04 1.01 7.06 -2.38 -0.02 0.99 16 39 H 0.07 0.62 7.21 -2.39 -0.02 0.60 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.11 1.24 7.12 -2.38 -0.02 1.23 16 43 H 0.07 1.59 6.86 -2.39 -0.02 1.57 16 44 H 0.09 3.89 7.21 -2.39 -0.02 3.87 16 45 H 0.04 1.74 6.70 -2.38 -0.02 1.72 16 46 H 0.04 2.38 6.80 -2.39 -0.02 2.36 16 47 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 48 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 49 H 0.07 2.17 6.94 -2.39 -0.02 2.15 16 Total: -1.00 -75.75 379.66 3.57 -72.19 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.94 Total: 13.14 kcal Atomic # 6 Polarization: 19.60 SS G_CDS: 7.78 Total: 27.38 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -7.09 Total: -123.16 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -0.09 Total: -36.82 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -75.75 3.57 -72.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042842247.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.677 kcal (2) G-P(sol) polarization free energy of solvation -75.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds