Wall clock time and date at job start Fri Apr 10 2020 18:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34782 * 119.99782 * 2 1 4 4 O 1.21281 * 119.99948 * 184.63052 * 3 2 1 5 5 C 1.50694 * 119.99858 * 4.63076 * 3 2 1 6 6 H 1.09000 * 110.88908 * 328.65244 * 5 3 2 7 7 C 1.54628 * 110.96929 * 92.46270 * 5 3 2 8 8 C 1.51294 * 104.25860 * 142.69754 * 7 5 3 9 9 O 1.21278 * 124.94568 * 164.00892 * 8 7 5 10 10 N 1.34411 * 110.10832 * 344.14795 * 8 7 5 11 11 C 1.46503 * 124.34501 * 179.43621 * 10 8 7 12 12 C 1.53001 * 109.47195 * 239.69635 * 11 10 8 13 13 C 1.53006 * 109.46939 * 119.70116 * 11 10 8 14 14 C 1.53000 * 109.47241 * 359.69970 * 11 10 8 15 15 C 1.46763 * 111.30574 * 359.16921 * 10 8 7 16 16 C 1.46503 * 120.00252 * 180.02562 * 2 1 3 17 17 C 1.53937 * 113.74704 * 36.66767 * 16 2 1 18 18 N 1.47578 * 86.11995 * 222.05200 * 17 16 2 19 19 C 1.36936 * 134.48947 * 204.63962 * 18 17 16 20 20 H 1.08007 * 119.99387 * 179.97438 * 19 18 17 21 21 C 1.38803 * 120.00524 * 359.97438 * 19 18 17 22 22 N 1.31623 * 119.99753 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00390 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46708 * 90.00156 * 23 21 19 25 25 H 1.48496 * 109.47493 * 209.99925 * 23 21 19 26 26 H 1.48499 * 109.46956 * 330.00323 * 23 21 19 27 27 C 1.47576 * 91.01531 * 24.63961 * 18 17 16 28 28 H 1.09002 * 109.47517 * 94.40993 * 1 2 3 29 29 H 1.09000 * 109.46670 * 214.40473 * 1 2 3 30 30 H 1.08995 * 109.47381 * 334.39830 * 1 2 3 31 31 H 1.09004 * 110.49039 * 261.59272 * 7 5 3 32 32 H 1.09004 * 110.48709 * 24.10730 * 7 5 3 33 33 H 1.09000 * 109.47455 * 300.00600 * 12 11 10 34 34 H 1.09003 * 109.46677 * 60.00155 * 12 11 10 35 35 H 1.09003 * 109.47272 * 179.97438 * 12 11 10 36 36 H 1.09003 * 109.46768 * 180.02562 * 13 11 10 37 37 H 1.08997 * 109.46996 * 299.99837 * 13 11 10 38 38 H 1.08997 * 109.47434 * 59.99947 * 13 11 10 39 39 H 1.09001 * 109.46967 * 299.99632 * 14 11 10 40 40 H 1.08997 * 109.47140 * 59.99891 * 14 11 10 41 41 H 1.09000 * 109.46917 * 179.97438 * 14 11 10 42 42 H 1.08995 * 110.24475 * 136.28467 * 15 10 8 43 43 H 1.09007 * 110.24584 * 258.19743 * 15 10 8 44 44 H 1.09002 * 112.94474 * 168.40353 * 16 2 1 45 45 H 1.09005 * 113.76989 * 336.35154 * 17 16 2 46 46 H 1.08998 * 113.77416 * 107.74187 * 17 16 2 47 47 H 0.97000 * 119.99757 * 179.97438 * 22 21 19 48 48 H 1.09000 * 113.76945 * 221.05977 * 27 18 17 49 49 H 1.09001 * 113.77109 * 89.66169 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3487 1.1690 -0.0848 5 6 1.3890 2.4701 0.1054 6 1 0.4066 2.3919 -0.3604 7 6 1.2681 2.9214 1.5794 8 6 1.4173 4.4259 1.5219 9 8 1.1138 5.1887 2.4146 10 7 1.9323 4.7942 0.3363 11 6 2.1953 6.1812 -0.0556 12 6 1.3864 6.5190 -1.3095 13 6 3.6870 6.3540 -0.3491 14 6 1.7874 7.1188 1.0825 15 6 2.2032 3.6282 -0.5128 16 6 2.1975 -1.2687 -0.0006 17 6 1.5287 -2.3703 -0.8425 18 7 1.8683 -3.2839 0.2657 19 6 2.0739 -4.6339 0.3677 20 1 2.3192 -5.0719 1.3240 21 6 1.9672 -5.4393 -0.7577 22 7 1.6678 -4.9054 -1.9230 23 14 2.2483 -7.2808 -0.6186 24 1 0.9606 -7.9567 -0.3180 25 1 2.7907 -7.7970 -1.9009 26 1 3.2169 -7.5525 0.4738 27 6 1.8974 -2.1582 1.2196 28 1 -0.3634 -0.0790 -1.0246 29 1 -0.3633 -0.8479 0.5807 30 1 -0.3634 0.9267 0.4440 31 1 0.2937 2.6471 1.9837 32 1 2.0660 2.4835 2.1791 33 1 1.6769 5.8510 -2.1203 34 1 0.3237 6.3958 -1.1004 35 1 1.5817 7.5511 -1.6008 36 1 3.8827 7.3861 -0.6402 37 1 4.2633 6.1133 0.5442 38 1 3.9776 5.6861 -1.1599 39 1 0.7248 6.9957 1.2916 40 1 2.3638 6.8781 1.9758 41 1 1.9836 8.1507 0.7911 42 1 1.8718 3.8197 -1.5333 43 1 3.2672 3.3916 -0.5004 44 1 3.2615 -1.1449 -0.2023 45 1 0.4570 -2.2275 -0.9814 46 1 2.0533 -2.5926 -1.7717 47 1 1.5935 -5.4682 -2.7095 48 1 2.7164 -2.2112 1.9368 49 1 0.9340 -1.9530 1.6865 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042842250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:32:12 Heat of formation + Delta-G solvation = -21.892826 kcal Electronic energy + Delta-G solvation = -28416.325475 eV Core-core repulsion = 24572.981632 eV Total energy + Delta-G solvation = -3843.343843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -42.16328 -40.95124 -39.31728 -37.77031 -36.51756 -35.92543 -34.01034 -31.62086 -29.60381 -28.97033 -28.22636 -28.07405 -27.86011 -26.59735 -25.66599 -23.77803 -22.44699 -21.04632 -19.80694 -19.69196 -18.93463 -18.59851 -17.61684 -17.31935 -17.00309 -16.54823 -16.31336 -16.14598 -15.73239 -15.13161 -15.01349 -14.90964 -14.74465 -14.63397 -14.37440 -14.10365 -13.74583 -13.64674 -13.29835 -13.22432 -13.14629 -13.06368 -13.00585 -12.96143 -12.81199 -12.61882 -12.54849 -12.41955 -12.35876 -12.04621 -11.99597 -11.96579 -11.93339 -11.53815 -10.91528 -10.87290 -10.44196 -9.67797 -9.54622 -8.95423 -7.93170 -5.26919 1.43869 1.46226 1.48012 1.56732 1.57035 1.81760 2.06153 2.48486 3.14729 3.27211 3.37962 3.43200 3.60332 3.78984 3.86476 3.93612 3.94272 4.05370 4.10057 4.29721 4.36855 4.46617 4.47320 4.57935 4.68593 4.69454 4.71679 4.73247 4.78532 4.80148 4.84941 4.86810 4.91651 4.93806 4.97339 5.03788 5.19430 5.20921 5.24999 5.30914 5.38029 5.48133 5.67599 5.70999 5.90466 6.12008 6.46574 6.89748 7.12764 7.15544 7.57537 8.50823 9.23768 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.034082 B = 0.002408 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.357207 B =11627.444616 C =11857.362404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.594 5.594 3 C 0.524 3.476 4 O -0.579 6.579 5 C -0.110 4.110 6 H 0.148 0.852 7 C -0.135 4.135 8 C 0.517 3.483 9 O -0.563 6.563 10 N -0.604 5.604 11 C 0.164 3.836 12 C -0.152 4.152 13 C -0.155 4.155 14 C -0.133 4.133 15 C 0.116 3.884 16 C 0.117 3.883 17 C 0.162 3.838 18 N -0.638 5.638 19 C -0.235 4.235 20 H 0.085 0.915 21 C -0.065 4.065 22 N -0.952 5.952 23 Si 0.980 3.020 24 H -0.284 1.284 25 H -0.294 1.294 26 H -0.270 1.270 27 C 0.114 3.886 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.041 0.959 46 H 0.038 0.962 47 H 0.250 0.750 48 H 0.048 0.952 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 24.035 1.030 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.325 5.325 3 C 0.313 3.687 4 O -0.459 6.459 5 C -0.132 4.132 6 H 0.165 0.835 7 C -0.175 4.175 8 C 0.305 3.695 9 O -0.443 6.443 10 N -0.338 5.338 11 C 0.082 3.918 12 C -0.210 4.210 13 C -0.213 4.213 14 C -0.190 4.190 15 C -0.007 4.007 16 C 0.011 3.989 17 C 0.036 3.964 18 N -0.365 5.365 19 C -0.363 4.363 20 H 0.102 0.898 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.808 3.192 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.195 1.195 27 C -0.012 4.012 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.151 0.849 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.097 0.903 42 H 0.126 0.874 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.603 24.191 1.310 24.493 hybrid contribution 0.286 -1.555 -0.057 1.582 sum -3.317 22.636 1.252 22.912 Atomic orbital electron populations 1.22129 0.77220 1.04751 1.03347 1.47947 1.08400 1.04721 1.71465 1.20630 0.87338 0.85573 0.75185 1.90690 1.16050 1.87616 1.51502 1.22242 1.02132 0.90899 0.97907 0.83477 1.22300 1.06960 0.92458 0.95805 1.20989 0.75940 0.91006 0.81557 1.90717 1.52946 1.58990 1.41617 1.48550 1.62055 1.06967 1.16181 1.20702 0.96135 0.78858 0.96128 1.22146 0.99694 1.03308 0.95823 1.22178 0.93782 1.03651 1.01707 1.21999 1.01703 0.98644 0.96690 1.22000 1.00569 0.82560 0.95583 1.23272 0.96880 0.81209 0.97497 1.22483 0.96721 0.84703 0.92542 1.45979 1.81472 1.02333 1.06717 1.19361 1.40116 0.81781 0.95050 0.89769 1.25629 1.02379 1.02543 0.95233 1.69990 1.55513 1.35371 0.99152 0.85061 0.77822 0.79561 0.76774 1.21052 1.22071 1.19456 1.23091 0.99290 0.85437 0.93400 0.91283 0.91251 0.87161 0.84913 0.88359 0.91225 0.92423 0.89633 0.89386 0.93763 0.91687 0.92891 0.93723 0.90315 0.87436 0.90771 0.88862 0.94172 0.94384 0.94118 0.93323 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 8.64 127.77 1.10 2.38 16 2 N -0.59 -16.12 3.09 -828.34 -2.56 -18.68 16 3 C 0.52 13.57 6.76 87.65 0.59 14.17 16 4 O -0.58 -20.03 15.17 -3.03 -0.05 -20.07 16 5 C -0.11 -1.81 2.57 -10.49 -0.03 -1.84 16 6 H 0.15 1.46 6.51 -2.39 -0.02 1.44 16 7 C -0.13 -2.34 6.34 30.59 0.19 -2.14 16 8 C 0.52 11.35 7.84 87.90 0.69 12.04 16 9 O -0.56 -16.02 13.99 -3.02 -0.04 -16.06 16 10 N -0.60 -10.95 2.76 -771.02 -2.13 -13.08 16 11 C 0.16 2.54 1.20 3.61 0.00 2.54 16 12 C -0.15 -1.62 8.49 71.98 0.61 -1.01 16 13 C -0.16 -2.15 8.54 71.98 0.61 -1.54 16 14 C -0.13 -2.39 7.00 71.98 0.50 -1.88 16 15 C 0.12 1.93 6.10 86.83 0.53 2.46 16 16 C 0.12 4.35 4.41 46.75 0.21 4.56 16 17 C 0.16 7.35 6.97 86.48 0.60 7.95 16 18 N -0.64 -32.11 3.70 -717.39 -2.65 -34.76 16 19 C -0.23 -13.04 10.70 84.03 0.90 -12.14 16 20 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 21 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 22 N -0.95 -56.47 11.38 21.65 0.25 -56.22 16 23 Si 0.98 45.20 29.55 68.60 2.03 47.23 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 C 0.11 4.44 8.48 86.48 0.73 5.18 16 28 H 0.07 1.24 8.09 -2.39 -0.02 1.22 16 29 H 0.07 1.50 6.56 -2.39 -0.02 1.48 16 30 H 0.11 1.17 6.04 -2.39 -0.01 1.16 16 31 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.10 1.99 7.89 -2.38 -0.02 1.97 16 33 H 0.07 0.65 7.21 -2.39 -0.02 0.63 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 0.87 7.90 -2.39 -0.02 0.85 16 39 H 0.05 1.12 7.10 -2.39 -0.02 1.10 16 40 H 0.04 1.02 7.04 -2.39 -0.02 1.00 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 42 H 0.11 1.29 7.12 -2.39 -0.02 1.28 16 43 H 0.07 1.59 6.90 -2.38 -0.02 1.57 16 44 H 0.09 3.95 7.22 -2.39 -0.02 3.93 16 45 H 0.04 1.75 6.78 -2.38 -0.02 1.74 16 46 H 0.04 2.01 7.16 -2.39 -0.02 2.00 16 47 H 0.25 14.40 8.31 -92.71 -0.77 13.62 16 48 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.06 2.12 6.92 -2.39 -0.02 2.10 16 Total: -1.00 -74.82 380.07 3.51 -71.32 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.94 Total: 12.78 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 7.72 Total: 27.55 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -7.09 Total: -122.75 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.09 Total: -36.13 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -74.82 3.51 -71.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042842250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.423 kcal (2) G-P(sol) polarization free energy of solvation -74.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds