Wall clock time and date at job start Fri Apr 10 2020 18:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.45387 * 2 1 4 4 C 1.34784 * 119.99867 * 60.03425 * 3 2 1 5 5 O 1.21279 * 119.99841 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00029 * 180.02562 * 4 3 2 7 7 H 1.09004 * 108.56045 * 297.92967 * 6 4 3 8 8 C 1.51772 * 108.61682 * 180.02562 * 6 4 3 9 9 C 1.52990 * 110.88686 * 171.87331 * 8 6 4 10 10 N 1.47202 * 108.66264 * 86.46433 * 9 8 6 11 11 C 1.33372 * 120.42515 * 288.02613 * 10 9 8 12 12 O 1.21277 * 119.89045 * 180.30719 * 11 10 9 13 13 C 1.51429 * 120.21907 * 0.32362 * 11 10 9 14 14 C 1.51787 * 108.61979 * 55.73379 * 6 4 3 15 15 C 1.53038 * 109.45625 * 240.03452 * 2 1 3 16 16 C 1.53192 * 109.31127 * 178.61700 * 15 2 1 17 17 N 1.46926 * 108.77519 * 54.63381 * 16 15 2 18 18 C 1.36943 * 120.63067 * 126.36994 * 17 16 15 19 19 H 1.08001 * 119.99826 * 332.50507 * 18 17 16 20 20 C 1.38806 * 120.00307 * 152.50845 * 18 17 16 21 21 N 1.31621 * 120.00035 * 335.02108 * 20 18 17 22 22 Si 1.86796 * 120.00250 * 155.01900 * 20 18 17 23 23 H 1.48502 * 109.47206 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47381 * 240.00094 * 22 20 18 25 25 H 1.48503 * 109.47017 * 120.00006 * 22 20 18 26 26 C 1.46924 * 118.73956 * 306.64370 * 17 16 15 27 27 C 1.52760 * 109.00872 * 53.31288 * 26 17 16 28 28 H 1.09000 * 109.47793 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46835 * 299.96787 * 1 2 3 30 30 H 1.09007 * 109.46813 * 59.96036 * 1 2 3 31 31 H 0.96995 * 120.00676 * 240.03947 * 3 2 1 32 32 H 1.09008 * 109.19123 * 292.23250 * 8 6 4 33 33 H 1.09003 * 109.19891 * 51.55270 * 8 6 4 34 34 H 1.08993 * 109.60652 * 206.21575 * 9 8 6 35 35 H 1.08996 * 109.59775 * 326.55076 * 9 8 6 36 36 H 0.96996 * 119.78354 * 108.04274 * 10 9 8 37 37 H 1.09003 * 109.63218 * 190.91665 * 13 11 10 38 38 H 1.08995 * 109.63508 * 311.31133 * 13 11 10 39 39 H 1.09006 * 109.22595 * 308.25772 * 14 6 4 40 40 H 1.09005 * 109.22062 * 67.60213 * 14 6 4 41 41 H 1.08996 * 109.50045 * 58.66546 * 15 2 1 42 42 H 1.09006 * 109.52359 * 298.58053 * 15 2 1 43 43 H 1.08999 * 109.58973 * 294.84823 * 16 15 2 44 44 H 1.09001 * 109.58698 * 174.42002 * 16 15 2 45 45 H 0.96998 * 119.99688 * 354.25874 * 21 20 18 46 46 H 1.09009 * 109.58597 * 173.14181 * 26 17 16 47 47 H 1.08998 * 109.58690 * 293.56823 * 26 17 16 48 48 H 1.08996 * 109.56544 * 185.55599 * 27 26 17 49 49 H 1.08997 * 109.38954 * 65.50942 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0179 1.3813 0.0000 4 6 1.6926 2.2109 1.0112 5 8 0.9964 1.8137 1.9214 6 6 2.1940 3.6320 1.0110 7 1 3.2833 3.6156 1.0474 8 6 1.6786 4.3279 2.2574 9 6 2.3172 5.7093 2.4145 10 7 1.5241 6.6846 1.6486 11 6 1.5594 6.6858 0.3154 12 8 0.9064 7.4974 -0.3058 13 6 2.4118 5.6770 -0.4254 14 6 1.7652 4.2970 -0.2843 15 6 2.0398 -0.7207 -1.2501 16 6 3.5713 -0.6886 -1.2643 17 7 4.0678 -1.2489 0.0000 18 6 4.9756 -2.2742 -0.0001 19 1 5.0102 -2.9648 -0.8297 20 6 5.8514 -2.4258 1.0662 21 7 6.1716 -1.3866 1.8077 22 14 6.5753 -4.1047 1.4487 23 1 6.0610 -5.0995 0.4735 24 1 6.1852 -4.5106 2.8229 25 1 8.0558 -4.0387 1.3536 26 6 3.5671 -0.6924 1.2642 27 6 2.0398 -0.7209 1.2501 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5134 0.8903 30 1 -0.3633 0.5145 -0.8897 31 1 2.5750 1.6990 -0.7277 32 1 0.5967 4.4394 2.1841 33 1 1.9178 3.7218 3.1312 34 1 2.3254 5.9908 3.4674 35 1 3.3383 5.6853 2.0341 36 1 0.9725 7.3308 2.1167 37 1 2.4683 5.9489 -1.4794 38 1 3.4141 5.6599 0.0025 39 1 2.0657 3.6719 -1.1253 40 1 0.6807 4.4070 -0.2894 41 1 1.6572 -0.2207 -2.1398 42 1 1.6977 -1.7557 -1.2389 43 1 3.9143 0.3408 -1.3674 44 1 3.9416 -1.2846 -2.0985 45 1 5.8630 -0.5009 1.5605 46 1 3.9346 -1.2910 2.0979 47 1 3.9097 0.3367 1.3715 48 1 1.6572 -0.2208 2.1398 49 1 1.6972 -1.7555 1.2386 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045515619.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:11 Heat of formation + Delta-G solvation = -65.470021 kcal Electronic energy + Delta-G solvation = -29496.011216 eV Core-core repulsion = 25650.777723 eV Total energy + Delta-G solvation = -3845.233492 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.87751 -39.90651 -37.90622 -36.45020 -34.69661 -34.28512 -31.98202 -31.34825 -30.80069 -30.01514 -27.36046 -27.26847 -24.37924 -23.99561 -22.62706 -22.28212 -20.93108 -20.11267 -19.91678 -18.73784 -17.80353 -17.40862 -17.34556 -16.59441 -15.43660 -15.25009 -14.74690 -14.53860 -14.32215 -14.27501 -13.92466 -13.83198 -13.62900 -13.52697 -13.40081 -13.15712 -12.87343 -12.57546 -12.39555 -12.05335 -11.95769 -11.79769 -11.73619 -11.65465 -11.25236 -11.08202 -11.00509 -10.72500 -10.64895 -10.45874 -10.16250 -10.06815 -10.02018 -9.90518 -9.42866 -9.35630 -9.12145 -8.70696 -8.38653 -6.90302 -6.09200 -3.25361 2.41602 2.82217 3.04796 3.32898 3.49246 3.52135 3.65133 4.17290 4.38828 4.45608 4.50192 4.57251 4.86159 4.91909 5.04591 5.10915 5.12633 5.20900 5.25702 5.29468 5.36616 5.38100 5.40013 5.54186 5.65363 5.70447 5.82428 5.86528 5.91928 6.01393 6.04215 6.07453 6.19652 6.29484 6.38702 6.52726 6.55219 6.58486 6.65501 6.73013 6.93545 6.98452 7.09049 7.21495 7.78291 7.98633 7.99085 8.45800 8.55639 9.09335 9.82478 10.26931 11.19149 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.018264 B = 0.003364 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.690449 B = 8322.155711 C = 8817.083878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.184 3.816 3 N -0.711 5.711 4 C 0.519 3.481 5 O -0.537 6.537 6 C -0.111 4.111 7 H 0.099 0.901 8 C -0.122 4.122 9 C 0.107 3.893 10 N -0.724 5.724 11 C 0.519 3.481 12 O -0.557 6.557 13 C -0.138 4.138 14 C -0.104 4.104 15 C -0.138 4.138 16 C 0.149 3.851 17 N -0.598 5.598 18 C -0.350 4.350 19 H 0.055 0.945 20 C -0.023 4.023 21 N -0.916 5.916 22 Si 1.067 2.933 23 H -0.292 1.292 24 H -0.290 1.290 25 H -0.294 1.294 26 C 0.159 3.841 27 C -0.145 4.145 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.396 0.604 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.400 0.600 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.012 0.988 44 H 0.056 0.944 45 H 0.268 0.732 46 H 0.075 0.925 47 H 0.013 0.987 48 H 0.073 0.927 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.333 12.411 -2.051 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.099 3.901 3 N -0.362 5.362 4 C 0.304 3.696 5 O -0.415 6.415 6 C -0.132 4.132 7 H 0.118 0.882 8 C -0.161 4.161 9 C -0.017 4.017 10 N -0.376 5.376 11 C 0.305 3.695 12 O -0.435 6.435 13 C -0.178 4.178 14 C -0.142 4.142 15 C -0.177 4.177 16 C 0.022 3.978 17 N -0.322 5.322 18 C -0.479 4.479 19 H 0.073 0.927 20 C -0.225 4.225 21 N -0.556 5.556 22 Si 0.898 3.102 23 H -0.219 1.219 24 H -0.217 1.217 25 H -0.221 1.221 26 C 0.033 3.967 27 C -0.185 4.185 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.231 0.769 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.235 0.765 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.030 0.970 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.031 0.969 48 H 0.092 0.908 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.060 11.499 -0.779 14.064 hybrid contribution -0.799 1.075 -1.279 1.852 sum -8.859 12.574 -2.058 15.518 Atomic orbital electron populations 1.22214 0.95266 1.01934 1.02351 1.20253 0.92714 0.80247 0.96912 1.46150 1.53028 1.12127 1.24873 1.20384 0.80231 0.87054 0.81903 1.90627 1.38079 1.77130 1.35645 1.21058 1.02775 0.92961 0.96433 0.88249 1.21632 1.01706 0.95055 0.97688 1.21847 0.95094 0.87977 0.96803 1.46004 1.48408 1.36506 1.06644 1.20595 0.81953 0.84385 0.82539 1.90751 1.45048 1.40461 1.67236 1.21990 0.99563 0.94041 1.02225 1.21215 1.01672 0.94596 0.96734 1.22329 0.99499 1.00650 0.95253 1.20845 0.90534 0.95917 0.90495 1.44123 1.48465 1.40431 0.99160 1.20008 1.13133 1.05009 1.09775 0.92688 1.25807 0.95266 1.04502 0.96938 1.70727 1.42620 0.99404 1.42814 0.83499 0.75801 0.75016 0.75926 1.21858 1.21669 1.22144 1.20752 0.89519 0.96234 0.90203 1.22384 0.99626 0.99506 0.96989 0.92252 0.90776 0.93440 0.76882 0.90534 0.89065 0.88997 0.90214 0.76456 0.88051 0.88801 0.89980 0.90907 0.92533 0.90671 0.97044 0.92520 0.92076 0.90617 0.96893 0.90817 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 8.40 37.16 0.31 -1.99 16 2 C 0.18 2.91 0.66 -131.78 -0.09 2.82 16 3 N -0.71 -9.83 3.90 -47.57 -0.19 -10.02 16 4 C 0.52 7.17 6.56 -10.98 -0.07 7.09 16 5 O -0.54 -9.09 11.96 5.56 0.07 -9.02 16 6 C -0.11 -1.10 2.05 -93.01 -0.19 -1.29 16 7 H 0.10 0.90 7.88 -51.93 -0.41 0.50 16 8 C -0.12 -1.12 4.38 -27.36 -0.12 -1.24 16 9 C 0.11 0.70 6.46 -3.66 -0.02 0.67 16 10 N -0.72 -5.85 5.27 -59.90 -0.32 -6.16 16 11 C 0.52 5.53 7.07 -11.25 -0.08 5.45 16 12 O -0.56 -8.32 17.92 5.56 0.10 -8.22 16 13 C -0.14 -1.13 5.56 -27.50 -0.15 -1.28 16 14 C -0.10 -0.90 4.87 -27.32 -0.13 -1.04 16 15 C -0.14 -2.17 4.96 -26.61 -0.13 -2.30 16 16 C 0.15 2.84 6.25 -3.71 -0.02 2.82 16 17 N -0.60 -14.19 2.86 -172.58 -0.49 -14.69 16 18 C -0.35 -9.48 9.49 -15.06 -0.14 -9.62 16 19 H 0.06 1.50 7.94 -52.49 -0.42 1.09 16 20 C -0.02 -0.64 4.68 -17.43 -0.08 -0.72 16 21 N -0.92 -26.80 12.41 55.49 0.69 -26.11 16 22 Si 1.07 24.97 29.99 -169.99 -5.10 19.87 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.16 3.62 4.41 -3.93 -0.02 3.60 16 27 C -0.15 -2.80 4.65 -26.83 -0.12 -2.93 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.18 6.17 -51.93 -0.32 0.86 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.40 4.84 6.26 -40.82 -0.26 4.58 16 32 H 0.08 0.80 8.05 -51.92 -0.42 0.38 16 33 H 0.09 0.94 7.75 -51.93 -0.40 0.54 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.46 6.72 -51.93 -0.35 0.11 16 36 H 0.40 2.87 8.91 -40.82 -0.36 2.50 16 37 H 0.10 0.80 8.13 -51.93 -0.42 0.38 16 38 H 0.09 0.61 6.79 -51.93 -0.35 0.25 16 39 H 0.08 0.64 6.97 -51.93 -0.36 0.28 16 40 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.01 0.21 6.94 -51.93 -0.36 -0.15 16 44 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 45 H 0.27 7.88 6.71 -40.82 -0.27 7.61 16 46 H 0.08 2.01 6.30 -51.92 -0.33 1.68 16 47 H 0.01 0.30 7.47 -51.93 -0.39 -0.08 16 48 H 0.07 1.47 6.20 -51.93 -0.32 1.15 16 49 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 365.90 15.07 5.51 5.51 Total: -1.00 -33.77 365.90 -8.69 -42.46 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.90 Total: 6.33 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.07 Total: 0.05 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.31 Total: -56.97 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.17 Total: -17.24 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.10 Total: 19.87 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.77 -8.69 -42.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045515619.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.014 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds