Wall clock time and date at job start Fri Apr 10 2020 18:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.45387 * 2 1 4 4 C 1.34784 * 119.99867 * 60.03425 * 3 2 1 5 5 O 1.21279 * 119.99841 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00029 * 180.02562 * 4 3 2 7 7 H 1.09004 * 108.56045 * 297.92967 * 6 4 3 8 8 C 1.51772 * 108.61682 * 180.02562 * 6 4 3 9 9 C 1.52990 * 110.88686 * 171.87331 * 8 6 4 10 10 N 1.47202 * 108.66264 * 86.46433 * 9 8 6 11 11 C 1.33372 * 120.42515 * 288.02613 * 10 9 8 12 12 O 1.21277 * 119.89045 * 180.30719 * 11 10 9 13 13 C 1.51429 * 120.21907 * 0.32362 * 11 10 9 14 14 C 1.51787 * 108.61979 * 55.73379 * 6 4 3 15 15 C 1.53038 * 109.45625 * 240.03452 * 2 1 3 16 16 C 1.53192 * 109.31127 * 178.61700 * 15 2 1 17 17 N 1.46926 * 108.77519 * 54.63381 * 16 15 2 18 18 C 1.36943 * 120.63067 * 126.36994 * 17 16 15 19 19 H 1.08001 * 119.99826 * 332.50507 * 18 17 16 20 20 C 1.38806 * 120.00307 * 152.50845 * 18 17 16 21 21 N 1.31621 * 120.00035 * 335.02108 * 20 18 17 22 22 Si 1.86796 * 120.00250 * 155.01900 * 20 18 17 23 23 H 1.48502 * 109.47206 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47381 * 240.00094 * 22 20 18 25 25 H 1.48503 * 109.47017 * 120.00006 * 22 20 18 26 26 C 1.46924 * 118.73956 * 306.64370 * 17 16 15 27 27 C 1.52760 * 109.00872 * 53.31288 * 26 17 16 28 28 H 1.09000 * 109.47793 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46835 * 299.96787 * 1 2 3 30 30 H 1.09007 * 109.46813 * 59.96036 * 1 2 3 31 31 H 0.96995 * 120.00676 * 240.03947 * 3 2 1 32 32 H 1.09008 * 109.19123 * 292.23250 * 8 6 4 33 33 H 1.09003 * 109.19891 * 51.55270 * 8 6 4 34 34 H 1.08993 * 109.60652 * 206.21575 * 9 8 6 35 35 H 1.08996 * 109.59775 * 326.55076 * 9 8 6 36 36 H 0.96996 * 119.78354 * 108.04274 * 10 9 8 37 37 H 1.09003 * 109.63218 * 190.91665 * 13 11 10 38 38 H 1.08995 * 109.63508 * 311.31133 * 13 11 10 39 39 H 1.09006 * 109.22595 * 308.25772 * 14 6 4 40 40 H 1.09005 * 109.22062 * 67.60213 * 14 6 4 41 41 H 1.08996 * 109.50045 * 58.66546 * 15 2 1 42 42 H 1.09006 * 109.52359 * 298.58053 * 15 2 1 43 43 H 1.08999 * 109.58973 * 294.84823 * 16 15 2 44 44 H 1.09001 * 109.58698 * 174.42002 * 16 15 2 45 45 H 0.96998 * 119.99688 * 354.25874 * 21 20 18 46 46 H 1.09009 * 109.58597 * 173.14181 * 26 17 16 47 47 H 1.08998 * 109.58690 * 293.56823 * 26 17 16 48 48 H 1.08996 * 109.56544 * 185.55599 * 27 26 17 49 49 H 1.08997 * 109.38954 * 65.50942 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0179 1.3813 0.0000 4 6 1.6926 2.2109 1.0112 5 8 0.9964 1.8137 1.9214 6 6 2.1940 3.6320 1.0110 7 1 3.2833 3.6156 1.0474 8 6 1.6786 4.3279 2.2574 9 6 2.3172 5.7093 2.4145 10 7 1.5241 6.6846 1.6486 11 6 1.5594 6.6858 0.3154 12 8 0.9064 7.4974 -0.3058 13 6 2.4118 5.6770 -0.4254 14 6 1.7652 4.2970 -0.2843 15 6 2.0398 -0.7207 -1.2501 16 6 3.5713 -0.6886 -1.2643 17 7 4.0678 -1.2489 0.0000 18 6 4.9756 -2.2742 -0.0001 19 1 5.0102 -2.9648 -0.8297 20 6 5.8514 -2.4258 1.0662 21 7 6.1716 -1.3866 1.8077 22 14 6.5753 -4.1047 1.4487 23 1 6.0610 -5.0995 0.4735 24 1 6.1852 -4.5106 2.8229 25 1 8.0558 -4.0387 1.3536 26 6 3.5671 -0.6924 1.2642 27 6 2.0398 -0.7209 1.2501 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5134 0.8903 30 1 -0.3633 0.5145 -0.8897 31 1 2.5750 1.6990 -0.7277 32 1 0.5967 4.4394 2.1841 33 1 1.9178 3.7218 3.1312 34 1 2.3254 5.9908 3.4674 35 1 3.3383 5.6853 2.0341 36 1 0.9725 7.3308 2.1167 37 1 2.4683 5.9489 -1.4794 38 1 3.4141 5.6599 0.0025 39 1 2.0657 3.6719 -1.1253 40 1 0.6807 4.4070 -0.2894 41 1 1.6572 -0.2207 -2.1398 42 1 1.6977 -1.7557 -1.2389 43 1 3.9143 0.3408 -1.3674 44 1 3.9416 -1.2846 -2.0985 45 1 5.8630 -0.5009 1.5605 46 1 3.9346 -1.2910 2.0979 47 1 3.9097 0.3367 1.3715 48 1 1.6572 -0.2208 2.1398 49 1 1.6972 -1.7555 1.2386 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045515619.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:33:10 Heat of formation + Delta-G solvation = -89.166697 kcal Electronic energy + Delta-G solvation = -29497.038781 eV Core-core repulsion = 25650.777723 eV Total energy + Delta-G solvation = -3846.261057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.88682 -40.91943 -39.23073 -37.44100 -36.32439 -35.09067 -33.55153 -32.34071 -32.02318 -31.66217 -28.96408 -28.02743 -25.82945 -25.11077 -24.08580 -23.45048 -22.41876 -21.04916 -20.72842 -20.16743 -19.37248 -18.60174 -18.16209 -17.48672 -16.72006 -16.30535 -16.13993 -15.90674 -15.70889 -15.37699 -15.16185 -15.10734 -15.01863 -14.78009 -14.59464 -14.28773 -14.06214 -13.52716 -13.41644 -13.37565 -13.21523 -13.03102 -12.80537 -12.71269 -12.52127 -12.46945 -12.34961 -12.02688 -11.91570 -11.87406 -11.83359 -11.69188 -11.39124 -11.19978 -10.87674 -10.45021 -10.39447 -10.13644 -9.95090 -8.88239 -8.21577 -5.36181 1.58752 1.60518 1.65900 1.74962 1.81440 2.25328 2.38754 2.66178 3.23843 3.47025 3.51099 3.60131 3.73174 3.75282 3.82780 3.97997 4.07656 4.19327 4.26970 4.37078 4.43421 4.45975 4.49916 4.53446 4.61440 4.67575 4.71810 4.76965 4.80724 4.84283 4.96277 4.99368 5.04370 5.06283 5.13050 5.13634 5.21670 5.25458 5.28640 5.32557 5.44137 5.71867 5.87008 5.87550 6.27228 6.42969 6.68808 7.09903 7.23513 7.37085 7.81073 8.26098 9.03484 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.018264 B = 0.003364 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.690449 B = 8322.155711 C = 8817.083878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.188 3.812 3 N -0.707 5.707 4 C 0.512 3.488 5 O -0.571 6.571 6 C -0.103 4.103 7 H 0.115 0.885 8 C -0.118 4.118 9 C 0.112 3.888 10 N -0.714 5.714 11 C 0.512 3.488 12 O -0.607 6.607 13 C -0.131 4.131 14 C -0.095 4.095 15 C -0.125 4.125 16 C 0.144 3.856 17 N -0.615 5.615 18 C -0.353 4.353 19 H 0.050 0.950 20 C -0.074 4.074 21 N -0.942 5.942 22 Si 1.113 2.887 23 H -0.274 1.274 24 H -0.292 1.292 25 H -0.290 1.290 26 C 0.174 3.826 27 C -0.134 4.134 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.407 0.593 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.404 0.596 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.029 0.971 44 H 0.052 0.948 45 H 0.255 0.745 46 H 0.029 0.971 47 H 0.006 0.994 48 H 0.063 0.937 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 12.906 -3.356 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.102 3.898 3 N -0.359 5.359 4 C 0.300 3.700 5 O -0.451 6.451 6 C -0.124 4.124 7 H 0.133 0.867 8 C -0.157 4.157 9 C -0.012 4.012 10 N -0.364 5.364 11 C 0.300 3.700 12 O -0.490 6.490 13 C -0.171 4.171 14 C -0.134 4.134 15 C -0.164 4.164 16 C 0.019 3.981 17 N -0.339 5.339 18 C -0.483 4.483 19 H 0.068 0.932 20 C -0.271 4.271 21 N -0.584 5.584 22 Si 0.938 3.062 23 H -0.199 1.199 24 H -0.219 1.219 25 H -0.217 1.217 26 C 0.048 3.952 27 C -0.174 4.174 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.244 0.756 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.116 0.884 36 H 0.240 0.760 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.116 0.884 40 H 0.076 0.924 41 H 0.115 0.885 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.048 0.952 47 H 0.024 0.976 48 H 0.082 0.918 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.088 12.000 -2.100 14.623 hybrid contribution -0.822 0.909 -0.849 1.491 sum -8.910 12.909 -2.949 15.960 Atomic orbital electron populations 1.22098 0.93734 1.02371 1.02587 1.20099 0.93740 0.81001 0.94940 1.46088 1.53137 1.11263 1.25419 1.21099 0.79455 0.88408 0.81077 1.90618 1.39583 1.78048 1.36849 1.21099 1.03480 0.90367 0.97469 0.86668 1.21582 1.00933 0.96358 0.96850 1.21959 0.95201 0.85885 0.98125 1.46030 1.47921 1.36311 1.06181 1.21076 0.81598 0.84164 0.83156 1.90728 1.47247 1.42626 1.68349 1.21984 1.00077 0.92547 1.02492 1.21145 1.00795 0.95059 0.96370 1.22196 0.96690 1.00794 0.96696 1.21048 0.92701 0.96342 0.88054 1.44310 1.48240 1.40454 1.00937 1.20237 1.12981 1.05692 1.09379 0.93204 1.27017 0.96120 1.06664 0.97297 1.70837 1.44421 0.99298 1.43873 0.82884 0.75366 0.71990 0.75928 1.19936 1.21888 1.21728 1.20453 0.91505 0.94590 0.88614 1.22212 0.96885 0.99383 0.98915 0.91768 0.92464 0.91209 0.75622 0.92136 0.90373 0.86619 0.88411 0.76012 0.87537 0.86394 0.88448 0.92393 0.88516 0.91466 0.95302 0.92894 0.93476 0.95191 0.97616 0.91815 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 8.40 71.98 0.60 -3.41 16 2 C 0.19 5.62 0.66 3.63 0.00 5.62 16 3 N -0.71 -18.12 3.90 -422.79 -1.65 -19.77 16 4 C 0.51 13.53 6.56 87.66 0.57 14.11 16 5 O -0.57 -19.27 11.96 -3.03 -0.04 -19.30 16 6 C -0.10 -1.84 2.05 -12.34 -0.03 -1.86 16 7 H 0.12 1.75 7.88 -2.39 -0.02 1.74 16 8 C -0.12 -2.01 4.38 30.19 0.13 -1.88 16 9 C 0.11 1.18 6.46 86.24 0.56 1.74 16 10 N -0.71 -10.30 5.27 -462.59 -2.44 -12.74 16 11 C 0.51 10.18 7.07 88.11 0.62 10.80 16 12 O -0.61 -17.93 17.92 -3.02 -0.05 -17.98 16 13 C -0.13 -1.80 5.56 30.09 0.17 -1.64 16 14 C -0.10 -1.43 4.87 30.21 0.15 -1.28 16 15 C -0.12 -3.57 4.96 30.67 0.15 -3.42 16 16 C 0.14 5.21 6.25 86.36 0.54 5.75 16 17 N -0.61 -29.12 2.86 -699.92 -2.00 -31.12 16 18 C -0.35 -19.19 9.49 84.03 0.80 -18.39 16 19 H 0.05 2.72 7.94 -2.91 -0.02 2.69 16 20 C -0.07 -4.16 4.68 84.86 0.40 -3.76 16 21 N -0.94 -56.34 12.41 21.65 0.27 -56.07 16 22 Si 1.11 50.68 29.99 68.60 2.06 52.74 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 26 C 0.17 8.11 4.41 86.22 0.38 8.49 16 27 C -0.13 -5.20 4.65 30.53 0.14 -5.06 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.76 6.17 -2.38 -0.01 1.75 16 30 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.41 8.66 6.26 -92.71 -0.58 8.08 16 32 H 0.06 1.23 8.05 -2.38 -0.02 1.21 16 33 H 0.08 1.56 7.75 -2.39 -0.02 1.54 16 34 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 0.76 6.72 -2.39 -0.02 0.74 16 36 H 0.40 5.26 8.91 -92.71 -0.83 4.44 16 37 H 0.11 1.42 8.13 -2.39 -0.02 1.40 16 38 H 0.12 1.07 6.79 -2.39 -0.02 1.05 16 39 H 0.10 1.18 6.97 -2.38 -0.02 1.17 16 40 H 0.06 1.07 7.87 -2.38 -0.02 1.05 16 41 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.03 0.97 6.94 -2.39 -0.02 0.95 16 44 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 45 H 0.26 15.43 6.71 -92.71 -0.62 14.80 16 46 H 0.03 1.65 6.30 -2.38 -0.02 1.63 16 47 H 0.01 0.28 7.47 -2.39 -0.02 0.26 16 48 H 0.06 2.60 6.20 -2.39 -0.01 2.58 16 49 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -76.11 365.90 1.05 -75.06 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.29 Total: 23.37 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.19 Total: 5.81 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -5.82 Total: -119.71 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.09 Total: -37.29 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.06 Total: 52.74 kcal Total: -76.11 1.05 -75.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045515619.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.104 kcal (2) G-P(sol) polarization free energy of solvation -76.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds