Wall clock time and date at job start Fri Apr 10 2020 18:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99863 * 2 1 4 4 H 1.48499 * 109.46718 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47106 * 299.99606 * 3 2 1 6 6 H 1.48499 * 109.47174 * 60.00164 * 3 2 1 7 7 C 1.38813 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00522 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64734 * 0.02562 * 9 7 2 11 11 C 1.54909 * 104.83288 * 204.09253 * 10 9 7 12 12 C 1.55155 * 101.58497 * 322.99388 * 11 10 9 13 13 H 1.08998 * 110.71774 * 277.13717 * 12 11 10 14 14 N 1.46901 * 110.72046 * 153.86174 * 12 11 10 15 15 C 1.46904 * 110.99767 * 184.41890 * 14 12 11 16 16 C 1.53244 * 109.33718 * 172.74837 * 15 14 12 17 17 N 1.47079 * 108.52051 * 53.82654 * 16 15 14 18 18 C 1.34784 * 120.87661 * 128.83517 * 17 16 15 19 19 O 1.21281 * 119.99458 * 179.97438 * 18 17 16 20 20 C 1.50693 * 119.99888 * 359.97438 * 18 17 16 21 21 H 1.09002 * 110.33439 * 57.24865 * 20 18 17 22 22 C 1.54477 * 110.37584 * 294.99512 * 20 18 17 23 23 C 1.54508 * 104.06689 * 217.19226 * 22 20 18 24 24 C 1.54479 * 104.05889 * 0.02562 * 23 22 20 25 25 O 1.44423 * 104.80775 * 23.97942 * 24 23 22 26 26 C 1.47079 * 118.24169 * 308.81525 * 17 16 15 27 27 C 1.46899 * 110.99881 * 60.11832 * 14 12 11 28 28 C 1.47021 * 125.65268 * 179.71847 * 9 7 2 29 29 H 0.96998 * 119.99852 * 0.02562 * 1 2 3 30 30 H 1.08995 * 110.36625 * 322.93908 * 10 9 7 31 31 H 1.09000 * 110.36501 * 85.14629 * 10 9 7 32 32 H 1.09000 * 110.99799 * 81.06821 * 11 10 9 33 33 H 1.09000 * 111.00523 * 204.91632 * 11 10 9 34 34 H 1.09000 * 109.49207 * 292.70512 * 15 14 12 35 35 H 1.09002 * 109.49369 * 52.78973 * 15 14 12 36 36 H 1.08997 * 109.62684 * 294.12128 * 16 15 14 37 37 H 1.08999 * 109.78579 * 173.63516 * 16 15 14 38 38 H 1.08998 * 110.50839 * 335.84345 * 22 20 18 39 39 H 1.08999 * 110.51080 * 98.41017 * 22 20 18 40 40 H 1.09006 * 110.50874 * 118.64292 * 23 22 20 41 41 H 1.08992 * 110.50997 * 241.35490 * 23 22 20 42 42 H 1.09004 * 110.37155 * 142.81048 * 24 23 22 43 43 H 1.08997 * 110.37048 * 265.03411 * 24 23 22 44 44 H 1.08994 * 109.62587 * 291.47514 * 26 17 16 45 45 H 1.08993 * 109.62858 * 170.89596 * 26 17 16 46 46 H 1.09006 * 109.49014 * 307.20921 * 27 14 12 47 47 H 1.08992 * 109.49411 * 67.26582 * 27 14 12 48 48 H 1.09008 * 109.87774 * 298.39443 * 28 9 7 49 49 H 1.08994 * 109.88385 * 59.55328 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 -0.0005 11 6 -0.4020 -3.9323 0.6112 12 6 0.7784 -4.7525 0.0271 13 1 0.5467 -5.0981 -0.9803 14 7 1.1088 -5.8843 0.9034 15 6 2.2915 -6.6033 0.4113 16 6 2.7099 -7.6574 1.4420 17 7 1.5462 -8.5056 1.7414 18 6 1.6356 -9.8491 1.6805 19 8 0.6661 -10.5333 1.9311 20 6 2.9402 -10.5010 1.3012 21 1 3.7318 -10.1887 1.9823 22 6 3.3141 -10.1483 -0.1556 23 6 3.9505 -11.4449 -0.7044 24 6 3.8852 -12.4278 0.4855 25 8 2.8040 -11.9391 1.3090 26 6 0.2826 -7.8490 2.1094 27 6 -0.0401 -6.7875 1.0524 28 6 1.9318 -3.7275 -0.0048 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5997 -1.7588 0.6146 31 1 -0.5267 -2.4849 -1.0191 32 1 -0.3532 -3.8980 1.6995 33 1 -1.3591 -4.3328 0.2770 34 1 2.0529 -7.0926 -0.5331 35 1 3.1089 -5.8983 0.2598 36 1 3.0477 -7.1643 2.3534 37 1 3.5152 -8.2701 1.0370 38 1 2.4226 -9.8889 -0.7266 39 1 4.0324 -9.3288 -0.1778 40 1 3.3735 -11.8266 -1.5468 41 1 4.9851 -11.2679 -0.9978 42 1 3.6679 -13.4362 0.1332 43 1 4.8231 -12.4144 1.0406 44 1 0.3873 -7.3744 3.0850 45 1 -0.5179 -8.5880 2.1426 46 1 -0.9138 -6.2159 1.3659 47 1 -0.2465 -7.2738 0.0991 48 1 2.5252 -3.8622 -0.9092 49 1 2.5612 -3.8530 0.8761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046000424.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:08 Heat of formation + Delta-G solvation = -26.706364 kcal Electronic energy + Delta-G solvation = -28592.898176 eV Core-core repulsion = 24749.345602 eV Total energy + Delta-G solvation = -3843.552574 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.88161 -39.31069 -38.24685 -36.64451 -34.38796 -32.65616 -31.99138 -31.57881 -30.03307 -29.08715 -27.96418 -26.12599 -24.31469 -24.16343 -23.30646 -21.94734 -21.50183 -20.03347 -19.73195 -19.12860 -17.83881 -16.95298 -16.77565 -16.51382 -15.80598 -15.45485 -15.12331 -15.07899 -14.88902 -14.61391 -14.45760 -14.18406 -14.01633 -13.53713 -13.18688 -13.03743 -12.65838 -12.41240 -12.25103 -12.07000 -11.86259 -11.76866 -11.62780 -11.56799 -11.37375 -11.30221 -11.10104 -10.94032 -10.84406 -10.37418 -10.29111 -10.15568 -10.04947 -9.85935 -9.76260 -9.57940 -8.90205 -8.66157 -8.18031 -6.83930 -5.66247 -3.07871 2.36447 2.51904 3.38906 3.44045 3.46797 3.58231 3.88654 4.00316 4.18308 4.37358 4.49023 4.55791 4.67994 4.70496 4.81661 4.88033 4.98548 5.06839 5.13353 5.24338 5.25426 5.29318 5.39564 5.42700 5.47713 5.48448 5.56125 5.56497 5.60304 5.69016 5.76243 5.81932 5.85722 5.97242 6.18510 6.31596 6.38057 6.52730 6.53894 6.62457 6.67059 7.14299 7.16320 7.37386 7.50977 7.62188 7.84973 7.95398 8.35597 9.21080 9.82224 10.46845 11.37841 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.026917 B = 0.002542 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.966701 B =11011.199737 C =11661.060929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.153 3.847 11 C -0.134 4.134 12 C 0.071 3.929 13 H 0.042 0.958 14 N -0.524 5.524 15 C 0.039 3.961 16 C 0.103 3.897 17 N -0.609 5.609 18 C 0.520 3.480 19 O -0.525 6.525 20 C 0.059 3.941 21 H 0.096 0.904 22 C -0.147 4.147 23 C -0.154 4.154 24 C 0.041 3.959 25 O -0.345 6.345 26 C 0.119 3.881 27 C 0.043 3.957 28 C 0.147 3.853 29 H 0.251 0.749 30 H 0.108 0.892 31 H 0.010 0.990 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.035 0.965 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.034 0.966 48 H 0.015 0.985 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.321 -21.369 0.547 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.028 3.972 11 C -0.173 4.173 12 C -0.037 4.037 13 H 0.060 0.940 14 N -0.250 5.250 15 C -0.090 4.090 16 C -0.020 4.020 17 N -0.344 5.344 18 C 0.307 3.693 19 O -0.400 6.400 20 C -0.003 4.003 21 H 0.113 0.887 22 C -0.185 4.185 23 C -0.192 4.192 24 C -0.036 4.036 25 O -0.263 6.263 26 C -0.003 4.003 27 C -0.086 4.086 28 C 0.021 3.979 29 H 0.062 0.938 30 H 0.126 0.874 31 H 0.028 0.972 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.052 0.948 48 H 0.033 0.967 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.712 -21.471 1.254 22.531 hybrid contribution 0.523 0.707 -1.101 1.409 sum 7.235 -20.764 0.153 21.989 Atomic orbital electron populations 1.69801 1.04901 1.24651 1.57776 1.24791 0.95732 0.97725 1.02520 0.85997 0.78628 0.83623 0.77243 1.20541 1.21810 1.21717 1.19107 0.90498 0.82383 1.42831 0.90459 1.44443 1.01974 0.99645 1.86864 1.21921 0.84766 0.92493 0.98068 1.23090 0.94914 0.98302 1.00999 1.22703 0.98045 0.89859 0.93064 0.94008 1.62004 1.04052 1.08833 1.50064 1.22467 0.95241 0.95848 0.95419 1.22116 0.87565 0.92281 1.00026 1.48107 1.12870 1.04764 1.68665 1.20178 0.89668 0.81918 0.77527 1.90714 1.38432 1.62376 1.48455 1.22855 0.95687 0.83794 0.97940 0.88693 1.23049 1.02234 0.98916 0.94293 1.22955 1.02052 0.94911 0.99238 1.23504 0.90697 0.98800 0.90595 1.89290 1.49984 1.16709 1.70319 1.21762 0.85747 0.94520 0.98305 1.22459 0.94668 0.93716 0.97775 1.21219 0.93327 0.85641 0.97735 0.93780 0.87435 0.97214 0.91051 0.92790 0.94670 0.88840 0.90007 0.89350 0.90075 0.89040 0.90267 0.89907 0.88586 0.91842 0.90370 0.88815 0.88897 0.94782 0.96691 0.94725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 10.09 55.49 0.56 -26.16 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.22 -6.06 10.27 -15.06 -0.15 -6.22 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.26 3.39 -170.07 -0.58 -15.84 16 10 C 0.15 3.67 5.89 -2.53 -0.01 3.65 16 11 C -0.13 -2.49 5.35 -24.58 -0.13 -2.62 16 12 C 0.07 1.21 2.64 -65.87 -0.17 1.04 16 13 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 14 N -0.52 -7.27 4.46 -224.14 -1.00 -8.26 16 15 C 0.04 0.44 5.45 -3.70 -0.02 0.42 16 16 C 0.10 0.95 6.19 -3.60 -0.02 0.92 16 17 N -0.61 -6.87 3.01 -172.47 -0.52 -7.39 16 18 C 0.52 6.67 7.02 -10.99 -0.08 6.59 16 19 O -0.52 -8.91 16.00 -13.67 -0.22 -9.13 16 20 C 0.06 0.57 2.78 -27.11 -0.08 0.49 16 21 H 0.10 0.72 7.89 -51.93 -0.41 0.31 16 22 C -0.15 -1.07 5.53 -25.16 -0.14 -1.21 16 23 C -0.15 -0.92 7.09 -25.16 -0.18 -1.10 16 24 C 0.04 0.29 7.63 37.93 0.29 0.58 16 25 O -0.35 -4.04 10.91 -54.46 -0.59 -4.64 16 26 C 0.12 1.40 6.60 -3.60 -0.02 1.38 16 27 C 0.04 0.53 5.46 -3.70 -0.02 0.51 16 28 C 0.15 2.98 5.73 -3.06 -0.02 2.96 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.11 2.92 5.87 -51.93 -0.30 2.61 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.05 0.89 7.93 -51.93 -0.41 0.47 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 1.06 6.82 -51.93 -0.35 0.70 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.58 3.99 -51.93 -0.21 0.37 16 38 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 39 H 0.09 0.47 6.51 -51.93 -0.34 0.13 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 1.16 7.06 -51.93 -0.37 0.80 16 46 H 0.09 1.15 6.78 -51.93 -0.35 0.80 16 47 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.02 0.30 8.14 -51.92 -0.42 -0.12 16 49 H 0.03 0.70 7.72 -51.93 -0.40 0.30 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -33.57 370.15 -10.82 -44.39 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -8.17 Total: -2.34 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -0.86 Total: 6.96 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -1.53 Total: -57.66 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.81 Total: -13.76 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.57 -10.82 -44.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046000424.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.685 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds