Wall clock time and date at job start Fri Apr 10 2020 18:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99727 * 2 1 4 4 H 1.48504 * 109.47323 * 274.98573 * 3 2 1 5 5 H 1.48495 * 109.47106 * 34.98832 * 3 2 1 6 6 H 1.48499 * 109.46974 * 154.98779 * 3 2 1 7 7 C 1.38801 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00844 * 186.80761 * 7 2 1 9 9 N 1.36940 * 120.00006 * 6.80609 * 7 2 1 10 10 C 1.47021 * 125.64568 * 353.81310 * 9 7 2 11 11 C 1.54327 * 107.26905 * 181.09338 * 10 9 7 12 12 C 1.55155 * 102.94232 * 22.19536 * 11 10 9 13 13 H 1.09003 * 111.03953 * 82.58793 * 12 11 10 14 14 N 1.46899 * 111.00628 * 206.42155 * 12 11 10 15 15 C 1.46900 * 111.00510 * 183.65130 * 14 12 11 16 16 C 1.53239 * 109.34155 * 187.25849 * 15 14 12 17 17 N 1.47080 * 108.51611 * 306.16359 * 16 15 14 18 18 C 1.34773 * 120.88424 * 231.18430 * 17 16 15 19 19 O 1.21289 * 119.99682 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.00557 * 180.27639 * 18 17 16 21 21 H 1.09000 * 109.86895 * 304.03176 * 20 18 17 22 22 C 1.54103 * 109.87723 * 65.03352 * 20 18 17 23 23 C 1.54807 * 104.18657 * 121.45486 * 22 20 18 24 24 C 1.54993 * 102.09206 * 20.88354 * 23 22 20 25 25 O 1.43740 * 109.88426 * 183.02374 * 20 18 17 26 26 C 1.47086 * 118.23975 * 51.46231 * 17 16 15 27 27 C 1.46904 * 110.99969 * 307.95722 * 14 12 11 28 28 C 1.47422 * 125.64943 * 173.85545 * 9 7 2 29 29 H 0.97001 * 119.99957 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.88307 * 300.50977 * 10 9 7 31 31 H 1.08997 * 109.88461 * 61.68086 * 10 9 7 32 32 H 1.09001 * 110.72175 * 263.83242 * 11 10 9 33 33 H 1.09007 * 110.72031 * 140.55922 * 11 10 9 34 34 H 1.08996 * 109.48936 * 67.29177 * 15 14 12 35 35 H 1.09007 * 109.50717 * 307.22498 * 15 14 12 36 36 H 1.08995 * 109.62521 * 186.46006 * 16 15 14 37 37 H 1.08999 * 109.79286 * 65.96900 * 16 15 14 38 38 H 1.09000 * 110.49298 * 240.13376 * 22 20 18 39 39 H 1.09001 * 110.48667 * 2.64680 * 22 20 18 40 40 H 1.09003 * 110.90921 * 139.07760 * 23 22 20 41 41 H 1.09006 * 110.91104 * 262.68482 * 23 22 20 42 42 H 1.09003 * 110.61868 * 81.47660 * 24 23 22 43 43 H 1.09003 * 110.61998 * 204.47230 * 24 23 22 44 44 H 1.09006 * 109.62683 * 68.24594 * 26 17 16 45 45 H 1.09001 * 109.63183 * 188.82546 * 26 17 16 46 46 H 1.09008 * 109.48464 * 292.69873 * 27 14 12 47 47 H 1.08999 * 109.49482 * 52.75247 * 27 14 12 48 48 H 1.09002 * 110.37016 * 36.99614 * 28 9 7 49 49 H 1.09006 * 110.36750 * 274.67158 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1074 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2020 -0.0005 8 1 3.0846 -1.2054 0.1103 9 7 1.3329 -2.3837 -0.1416 10 6 -0.1292 -2.5349 -0.1721 11 6 -0.4311 -4.0412 -0.3186 12 6 0.8675 -4.7085 0.2063 13 1 0.8627 -4.7721 1.2944 14 7 1.0578 -6.0353 -0.3949 15 6 2.2400 -6.7030 0.1661 16 6 2.5081 -7.9969 -0.6098 17 7 1.2790 -8.8048 -0.6097 18 6 1.3021 -10.0992 -0.2348 19 8 2.3458 -10.6125 0.1089 20 6 0.0320 -10.9103 -0.2482 21 1 -0.7259 -10.4220 0.3644 22 6 -0.4793 -11.0594 -1.6942 23 6 -0.5266 -12.5896 -1.9240 24 6 -0.5717 -13.1345 -0.4737 25 8 0.2905 -12.2316 0.2553 26 6 0.0252 -8.1645 -1.0354 27 6 -0.1462 -6.8622 -0.2373 28 6 1.9489 -3.7152 -0.2871 29 1 -0.4850 0.8401 0.0004 30 1 -0.5602 -2.1589 0.7557 31 1 -0.5405 -1.9901 -1.0219 32 1 -0.6028 -4.3004 -1.3633 33 1 -1.2858 -4.3247 0.2957 34 1 2.0611 -6.9383 1.2152 35 1 3.1040 -6.0435 0.0833 36 1 3.3119 -8.5531 -0.1275 37 1 2.7907 -7.7603 -1.6356 38 1 -1.4753 -10.6278 -1.7932 39 1 0.2111 -10.5877 -2.3935 40 1 -1.4241 -12.8728 -2.4739 41 1 0.3694 -12.9333 -2.4410 42 1 -1.5873 -13.0940 -0.0798 43 1 -0.1838 -14.1524 -0.4338 44 1 0.0719 -7.9407 -2.1013 45 1 -0.8132 -8.8315 -0.8349 46 1 -0.2916 -7.0954 0.8175 47 1 -1.0129 -6.3180 -0.6125 48 1 2.8430 -3.7893 0.3320 49 1 2.1929 -3.9082 -1.3319 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046000427.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:25 Heat of formation + Delta-G solvation = -54.296362 kcal Electronic energy + Delta-G solvation = -28424.664947 eV Core-core repulsion = 24579.915981 eV Total energy + Delta-G solvation = -3844.748966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.72678 -40.29087 -39.29882 -37.99788 -35.69176 -33.97027 -33.14794 -32.45403 -30.94765 -30.72861 -29.24073 -27.46186 -26.01826 -24.86664 -24.34651 -22.77793 -22.15059 -21.76751 -21.16357 -20.19947 -18.91912 -18.47008 -17.58240 -17.49599 -17.03781 -16.50320 -16.41018 -16.01800 -15.91424 -15.78439 -15.54791 -15.32971 -14.70888 -14.59414 -14.45878 -14.30709 -13.95212 -13.82657 -13.54832 -13.37728 -12.92620 -12.82930 -12.74038 -12.65653 -12.60574 -12.38140 -12.22200 -12.14477 -11.97543 -11.84738 -11.83245 -11.67614 -11.54934 -11.48932 -11.15046 -10.68682 -10.48842 -9.87782 -9.29513 -8.88169 -7.86258 -5.20566 1.45997 1.46275 1.47941 1.56591 1.72270 2.47641 2.78118 2.94314 3.32275 3.32595 3.57278 3.64968 3.80464 3.84049 3.91465 3.98333 4.03733 4.13711 4.21828 4.24401 4.27632 4.31764 4.38023 4.42553 4.52337 4.64773 4.71042 4.73011 4.74046 4.79048 4.86243 4.91750 4.92638 4.98366 5.01065 5.04035 5.10169 5.15067 5.21995 5.35989 5.45876 5.68106 5.75743 5.79172 6.02064 6.09798 6.21791 6.33570 7.05280 7.10951 7.78031 8.42558 9.24646 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.037860 B = 0.002342 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.386159 B =11951.381873 C =12397.781507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.977 3.023 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.243 4.243 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.184 3.816 11 C -0.115 4.115 12 C 0.087 3.913 13 H 0.038 0.962 14 N -0.525 5.525 15 C 0.047 3.953 16 C 0.124 3.876 17 N -0.607 5.607 18 C 0.508 3.492 19 O -0.579 6.579 20 C 0.060 3.940 21 H 0.116 0.884 22 C -0.143 4.143 23 C -0.150 4.150 24 C 0.035 3.965 25 O -0.390 6.390 26 C 0.113 3.887 27 C 0.034 3.966 28 C 0.148 3.852 29 H 0.247 0.753 30 H 0.005 0.995 31 H 0.012 0.988 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.028 0.972 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.124 0.876 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.118 0.882 46 H 0.034 0.966 47 H 0.107 0.893 48 H 0.032 0.968 49 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.609 -25.368 -4.935 26.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.356 5.356 10 C 0.059 3.941 11 C -0.154 4.154 12 C -0.022 4.022 13 H 0.056 0.944 14 N -0.250 5.250 15 C -0.082 4.082 16 C 0.001 3.999 17 N -0.341 5.341 18 C 0.297 3.703 19 O -0.459 6.459 20 C -0.001 4.001 21 H 0.133 0.867 22 C -0.180 4.180 23 C -0.188 4.188 24 C -0.040 4.040 25 O -0.309 6.309 26 C -0.009 4.009 27 C -0.094 4.094 28 C 0.022 3.978 29 H 0.057 0.943 30 H 0.024 0.976 31 H 0.030 0.970 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.046 0.954 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.142 0.858 39 H 0.096 0.904 40 H 0.132 0.868 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.136 0.864 46 H 0.052 0.948 47 H 0.125 0.875 48 H 0.051 0.949 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.862 -25.440 -5.064 26.594 hybrid contribution 0.484 1.382 1.083 1.821 sum -5.378 -24.059 -3.981 24.972 Atomic orbital electron populations 1.70186 1.06245 1.25307 1.58027 1.25655 0.96642 1.00960 1.02560 0.85081 0.77822 0.79252 0.77320 1.21340 1.22079 1.19363 1.19429 0.91550 0.83904 1.42309 0.90237 1.44744 1.02681 1.02248 1.85921 1.20921 0.83678 0.91938 0.97557 1.22775 0.96286 0.94425 1.01870 1.22532 0.96477 0.87967 0.95257 0.94368 1.61910 1.04025 1.01707 1.57325 1.22419 0.94571 0.95271 0.95895 1.21615 0.86968 0.89708 1.01627 1.48246 1.10878 1.09557 1.65460 1.21180 0.91084 0.82098 0.75980 1.90679 1.34747 1.71239 1.49211 1.22803 0.93307 0.85460 0.98541 0.86715 1.23085 1.04207 0.98271 0.92465 1.23153 1.04311 0.94068 0.97230 1.23946 0.95172 0.94305 0.90612 1.89025 1.64125 1.16330 1.61422 1.22310 0.85298 0.93033 1.00258 1.22734 0.93608 0.94105 0.98948 1.21554 0.94345 0.84077 0.97815 0.94342 0.97647 0.96986 0.89872 0.89956 0.95416 0.89487 0.90142 0.89605 0.85769 0.90372 0.86760 0.91535 0.89594 0.88276 0.88616 0.86399 0.94770 0.87481 0.94944 0.95079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.14 10.36 21.65 0.22 -56.92 16 2 C -0.07 -3.73 5.48 84.86 0.47 -3.26 16 3 Si 0.98 46.01 29.56 68.60 2.03 48.04 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 5 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.24 -13.77 10.26 84.03 0.86 -12.91 16 8 H 0.08 4.34 7.84 -2.91 -0.02 4.31 16 9 N -0.63 -32.54 3.39 -691.99 -2.35 -34.89 16 10 C 0.18 8.97 5.38 86.73 0.47 9.44 16 11 C -0.12 -3.90 4.93 31.78 0.16 -3.74 16 12 C 0.09 2.83 2.73 46.31 0.13 2.96 16 13 H 0.04 1.33 8.13 -2.39 -0.02 1.32 16 14 N -0.52 -13.18 4.53 -860.95 -3.90 -17.07 16 15 C 0.05 1.16 5.53 86.38 0.48 1.63 16 16 C 0.12 2.79 6.60 86.35 0.57 3.36 16 17 N -0.61 -12.26 3.00 -817.04 -2.45 -14.72 16 18 C 0.51 12.32 6.90 87.66 0.60 12.92 16 19 O -0.58 -20.00 15.98 15.65 0.25 -19.75 16 20 C 0.06 1.00 2.95 30.22 0.09 1.09 16 21 H 0.12 1.38 7.47 -2.39 -0.02 1.36 16 22 C -0.14 -1.30 5.10 31.58 0.16 -1.14 16 23 C -0.15 -1.29 7.16 31.89 0.23 -1.07 16 24 C 0.04 0.42 7.72 72.66 0.56 0.98 16 25 O -0.39 -8.62 10.75 -130.27 -1.40 -10.02 16 26 C 0.11 1.53 5.76 86.50 0.50 2.03 16 27 C 0.03 0.63 5.40 86.54 0.47 1.10 16 28 C 0.15 6.02 6.10 86.86 0.53 6.55 16 29 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 30 H 0.01 0.29 7.55 -2.39 -0.02 0.27 16 31 H 0.01 0.65 7.36 -2.39 -0.02 0.64 16 32 H 0.08 2.59 7.96 -2.39 -0.02 2.57 16 33 H 0.08 2.37 7.99 -2.38 -0.02 2.35 16 34 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 2.21 7.23 -2.38 -0.02 2.19 16 36 H 0.08 2.05 7.06 -2.39 -0.02 2.04 16 37 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.12 0.29 7.78 -2.39 -0.02 0.27 16 39 H 0.08 0.85 7.51 -2.39 -0.02 0.83 16 40 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 45 H 0.12 0.84 5.01 -2.39 -0.01 0.83 16 46 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.11 1.76 6.45 -2.39 -0.02 1.74 16 48 H 0.03 1.31 7.92 -2.39 -0.02 1.29 16 49 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -78.15 371.76 -0.41 -78.56 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 0.92 Total: 6.85 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 6.26 Total: 19.92 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -8.48 Total: -123.59 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -1.15 Total: -29.78 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -78.15 -0.41 -78.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046000427.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.265 kcal (2) G-P(sol) polarization free energy of solvation -78.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds