Wall clock time and date at job start Fri Apr 10 2020 18:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48502 * 109.46970 * 264.98627 * 3 2 1 5 5 H 1.48500 * 109.47453 * 24.98078 * 3 2 1 6 6 H 1.48495 * 109.47443 * 144.98237 * 3 2 1 7 7 C 1.38813 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99683 * 187.16738 * 7 2 1 9 9 N 1.36933 * 120.00085 * 7.16120 * 7 2 1 10 10 C 1.47014 * 125.65048 * 6.77763 * 9 7 2 11 11 C 1.54326 * 107.27145 * 178.98517 * 10 9 7 12 12 C 1.55155 * 102.94094 * 337.80460 * 11 10 9 13 13 H 1.09002 * 111.00615 * 277.42408 * 12 11 10 14 14 N 1.46902 * 111.00111 * 153.61911 * 12 11 10 15 15 C 1.46900 * 111.00003 * 185.55217 * 14 12 11 16 16 C 1.53232 * 109.34465 * 172.74411 * 15 14 12 17 17 N 1.47083 * 108.52245 * 53.82676 * 16 15 14 18 18 C 1.34773 * 120.88463 * 128.79796 * 17 16 15 19 19 O 1.21281 * 120.00048 * 180.02562 * 18 17 16 20 20 C 1.50704 * 119.99746 * 0.02562 * 18 17 16 21 21 H 1.08996 * 110.43691 * 298.91006 * 20 18 17 22 22 C 1.54811 * 110.48644 * 176.22223 * 20 18 17 23 23 C 1.54991 * 102.09286 * 220.44464 * 22 20 18 24 24 O 1.44382 * 103.49089 * 37.02460 * 23 22 20 25 25 C 1.43748 * 106.97300 * 319.93763 * 24 23 22 26 26 C 1.47080 * 118.23432 * 308.81708 * 17 16 15 27 27 C 1.46896 * 111.00492 * 61.24747 * 14 12 11 28 28 C 1.47426 * 125.64448 * 186.82738 * 9 7 2 29 29 H 0.96993 * 120.00528 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.88444 * 59.56499 * 10 9 7 31 31 H 1.09002 * 109.88535 * 298.40282 * 10 9 7 32 32 H 1.09005 * 110.71691 * 219.44156 * 11 10 9 33 33 H 1.08995 * 110.87129 * 96.24350 * 11 10 9 34 34 H 1.09002 * 109.48980 * 292.70414 * 15 14 12 35 35 H 1.09000 * 109.49709 * 52.78080 * 15 14 12 36 36 H 1.09006 * 109.62661 * 294.11949 * 16 15 14 37 37 H 1.08997 * 109.79197 * 173.63196 * 16 15 14 38 38 H 1.08996 * 110.90744 * 338.64694 * 22 20 18 39 39 H 1.09004 * 110.90552 * 102.24780 * 22 20 18 40 40 H 1.09006 * 110.61638 * 278.52433 * 23 22 20 41 41 H 1.08997 * 110.75713 * 155.59086 * 23 22 20 42 42 H 1.09001 * 109.87993 * 267.08524 * 25 24 23 43 43 H 1.09000 * 109.99886 * 146.00715 * 25 24 23 44 44 H 1.08994 * 109.63288 * 291.47317 * 26 17 16 45 45 H 1.09001 * 109.78719 * 170.98677 * 26 17 16 46 46 H 1.09007 * 109.49051 * 307.21549 * 27 14 12 47 47 H 1.08997 * 109.49438 * 67.26747 * 27 14 12 48 48 H 1.08999 * 110.36916 * 85.24879 * 28 9 7 49 49 H 1.09001 * 110.36814 * 322.92202 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6036 1.9852 -1.3948 5 1 1.3987 2.6810 0.5913 6 1 3.4907 1.4732 0.8034 7 6 2.0103 -1.2022 0.0005 8 1 3.0840 -1.2057 0.1172 9 7 1.3336 -2.3835 -0.1468 10 6 -0.0979 -2.5185 -0.4530 11 6 -0.4056 -4.0278 -0.5489 12 6 0.9845 -4.6473 -0.8508 13 1 1.2173 -4.5856 -1.9139 14 7 1.0554 -6.0367 -0.3790 15 6 2.4099 -6.5805 -0.5450 16 6 2.4886 -7.9586 0.1204 17 7 1.4100 -8.8004 -0.4194 18 6 1.6700 -10.0295 -0.9073 19 8 0.7684 -10.7098 -1.3490 20 6 3.0811 -10.5585 -0.9039 21 1 3.7277 -9.9218 -1.5078 22 6 3.1144 -12.0167 -1.4227 23 6 4.1393 -12.6782 -0.4666 24 8 3.8703 -12.0477 0.8041 25 6 3.6164 -10.6581 0.5377 26 6 0.0402 -8.2649 -0.4131 27 6 0.0579 -6.8747 -1.0575 28 6 1.9199 -3.7305 -0.0235 29 1 -0.4850 0.8399 -0.0004 30 1 -0.3211 -2.0336 -1.4034 31 1 -0.6914 -2.0691 0.3431 32 1 -1.1022 -4.2284 -1.3629 33 1 -0.7990 -4.4046 0.3951 34 1 2.6359 -6.6759 -1.6070 35 1 3.1311 -5.9096 -0.0782 36 1 2.3656 -7.8524 1.1982 37 1 3.4536 -8.4176 -0.0945 38 1 2.1350 -12.4857 -1.3279 39 1 3.4641 -12.0547 -2.4544 40 1 5.1584 -12.4678 -0.7913 41 1 3.9718 -13.7534 -0.4046 42 1 4.5408 -10.0880 0.6301 43 1 2.8730 -10.2743 1.2364 44 1 -0.3183 -8.1881 0.6134 45 1 -0.6162 -8.9237 -0.9817 46 1 -0.9269 -6.4170 -0.9624 47 1 0.3163 -6.9657 -2.1125 48 1 1.9327 -4.0446 1.0202 49 1 2.9282 -3.7448 -0.4373 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046007858.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:34:35 Heat of formation + Delta-G solvation = -33.834669 kcal Electronic energy + Delta-G solvation = -28442.919665 eV Core-core repulsion = 24599.057985 eV Total energy + Delta-G solvation = -3843.861680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.99811 -39.31405 -38.32606 -36.72081 -34.39593 -32.85207 -31.99479 -31.38577 -29.82220 -29.09124 -28.01359 -26.14007 -24.36077 -23.86307 -23.54391 -22.58266 -21.02754 -19.95284 -19.78666 -19.17823 -17.62030 -17.04041 -16.86516 -16.65992 -15.87218 -15.54971 -15.29277 -15.10127 -14.91937 -14.55894 -14.49109 -14.09920 -13.96347 -13.33263 -13.22554 -12.96474 -12.70687 -12.40979 -12.25860 -12.09507 -11.88252 -11.84377 -11.74643 -11.67282 -11.40682 -11.30956 -11.27302 -10.88600 -10.83580 -10.33238 -10.17865 -10.13959 -10.07505 -9.94274 -9.85473 -9.65609 -8.95524 -8.62966 -8.21379 -6.83302 -5.71592 -3.07755 2.31164 2.65408 3.38922 3.43573 3.45694 3.49565 3.83650 3.93942 4.12649 4.45433 4.49223 4.57714 4.73767 4.76647 4.81562 4.85363 4.96540 5.06339 5.16884 5.21832 5.23262 5.27404 5.33951 5.42813 5.44071 5.47040 5.57195 5.59044 5.65348 5.73651 5.76125 5.79322 5.83810 5.93579 6.21701 6.24800 6.39455 6.44428 6.49080 6.60930 6.71657 7.10292 7.13014 7.32829 7.47619 7.65768 7.80941 7.87269 8.25713 9.19589 9.80817 10.46989 11.38494 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.028706 B = 0.002437 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.173577 B =11485.597055 C =12179.125948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.174 3.826 11 C -0.133 4.133 12 C 0.067 3.933 13 H 0.046 0.954 14 N -0.525 5.525 15 C 0.039 3.961 16 C 0.108 3.892 17 N -0.610 5.610 18 C 0.525 3.475 19 O -0.540 6.540 20 C -0.147 4.147 21 H 0.111 0.889 22 C -0.140 4.140 23 C 0.046 3.954 24 O -0.374 6.374 25 C 0.057 3.943 26 C 0.117 3.883 27 C 0.042 3.958 28 C 0.148 3.852 29 H 0.252 0.748 30 H 0.028 0.972 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.034 0.966 48 H 0.030 0.970 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.231 -22.512 -2.068 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.049 3.951 11 C -0.171 4.171 12 C -0.041 4.041 13 H 0.064 0.936 14 N -0.251 5.251 15 C -0.090 4.090 16 C -0.015 4.015 17 N -0.344 5.344 18 C 0.313 3.687 19 O -0.417 6.417 20 C -0.169 4.169 21 H 0.129 0.871 22 C -0.178 4.178 23 C -0.031 4.031 24 O -0.293 6.293 25 C -0.020 4.020 26 C -0.005 4.005 27 C -0.087 4.087 28 C 0.022 3.978 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.110 0.890 47 H 0.052 0.948 48 H 0.047 0.953 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.579 -22.731 -1.576 23.459 hybrid contribution 0.688 1.257 -1.201 1.870 sum 6.267 -21.474 -2.778 22.541 Atomic orbital electron populations 1.69949 1.04927 1.25098 1.56691 1.24820 0.95677 0.97734 1.02226 0.86142 0.78588 0.83423 0.77621 1.21620 1.21688 1.20703 1.19017 0.90807 0.82575 1.43340 0.90530 1.44405 1.05657 0.99777 1.83228 1.21185 0.85592 0.88341 0.99996 1.22914 0.94616 0.99000 1.00587 1.22889 0.98808 0.85628 0.96813 0.93616 1.61962 1.03559 1.02158 1.57375 1.22469 0.92231 0.95244 0.99018 1.22030 0.89804 0.90282 0.99402 1.48187 1.09508 1.15498 1.61166 1.20278 0.90513 0.80902 0.77050 1.90680 1.47092 1.57156 1.46746 1.22744 0.95331 0.99508 0.99315 0.87118 1.23121 1.02064 0.92606 1.00001 1.23621 0.97830 0.98598 0.83033 1.88911 1.91167 1.20535 1.28649 1.23262 1.00416 0.84300 0.94051 1.21757 0.82655 0.93894 1.02199 1.22456 0.97755 0.92795 0.95654 1.21458 0.94050 0.85743 0.96577 0.93726 0.95362 0.92041 0.92738 0.91289 0.94644 0.88758 0.89906 0.89649 0.88476 0.89664 0.91903 0.88553 0.91041 0.89247 0.90466 0.88855 0.88998 0.94776 0.95257 0.94933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 10.48 55.49 0.58 -26.33 16 2 C -0.01 -0.23 5.45 -17.43 -0.09 -0.32 16 3 Si 0.91 21.93 29.56 -169.99 -5.02 16.90 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.23 -6.33 10.26 -15.06 -0.15 -6.48 16 8 H 0.08 2.03 7.84 -52.48 -0.41 1.62 16 9 N -0.60 -15.25 3.39 -170.07 -0.58 -15.83 16 10 C 0.17 4.17 5.43 -3.07 -0.02 4.16 16 11 C -0.13 -2.41 5.30 -24.90 -0.13 -2.55 16 12 C 0.07 1.13 2.71 -65.56 -0.18 0.95 16 13 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 14 N -0.53 -7.10 4.53 -223.78 -1.01 -8.11 16 15 C 0.04 0.44 5.48 -3.70 -0.02 0.42 16 16 C 0.11 0.95 5.37 -3.60 -0.02 0.93 16 17 N -0.61 -6.46 2.97 -172.46 -0.51 -6.97 16 18 C 0.52 5.95 6.93 -10.98 -0.08 5.88 16 19 O -0.54 -7.95 14.92 5.56 0.08 -7.87 16 20 C -0.15 -1.21 2.52 -90.24 -0.23 -1.43 16 21 H 0.11 0.70 7.74 -51.93 -0.40 0.29 16 22 C -0.14 -1.10 6.50 -24.73 -0.16 -1.26 16 23 C 0.05 0.32 7.72 38.21 0.29 0.62 16 24 O -0.37 -3.68 11.52 -35.23 -0.41 -4.09 16 25 C 0.06 0.45 5.75 37.73 0.22 0.67 16 26 C 0.12 1.31 6.59 -3.60 -0.02 1.29 16 27 C 0.04 0.51 5.48 -3.70 -0.02 0.49 16 28 C 0.15 2.97 5.68 -2.53 -0.01 2.95 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.03 0.74 7.93 -51.93 -0.41 0.33 16 31 H 0.06 1.65 6.97 -51.93 -0.36 1.29 16 32 H 0.05 0.89 7.94 -51.93 -0.41 0.48 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 1.05 6.82 -51.93 -0.35 0.70 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.54 5.02 -51.93 -0.26 0.28 16 38 H 0.10 0.98 6.93 -51.93 -0.36 0.62 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.42 7.82 -51.93 -0.41 0.01 16 43 H 0.09 0.75 6.98 -51.93 -0.36 0.39 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 1.09 7.07 -51.93 -0.37 0.73 16 46 H 0.09 1.10 6.84 -51.93 -0.36 0.75 16 47 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.03 0.63 7.85 -51.93 -0.41 0.22 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -32.82 369.33 -10.16 -42.98 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -8.23 Total: -2.55 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -0.63 Total: 6.30 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -1.52 Total: -57.24 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.32 Total: -11.96 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.82 -10.16 -42.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046007858.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.148 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds