Wall clock time and date at job start Fri Apr 10 2020 18:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 119.99437 * 2 1 4 4 N 1.34771 * 120.00190 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99811 * 180.02562 * 4 2 1 6 6 H 1.08993 * 109.47313 * 35.00180 * 5 4 2 7 7 C 1.50698 * 109.47013 * 155.00157 * 5 4 2 8 8 O 1.21283 * 120.00291 * 0.02562 * 7 5 4 9 9 N 1.34781 * 120.00239 * 179.97438 * 7 5 4 10 10 C 1.46492 * 120.00272 * 179.72257 * 9 7 5 11 11 C 1.53004 * 109.47564 * 180.27758 * 10 9 7 12 12 H 1.09006 * 115.50777 * 29.58343 * 11 10 9 13 13 C 1.52991 * 117.44382 * 244.24379 * 11 10 9 14 14 H 1.09003 * 119.54236 * 4.11414 * 13 11 10 15 15 C 1.57695 * 116.10883 * 161.63382 * 13 11 10 16 16 N 1.48150 * 104.67272 * 87.31001 * 15 13 11 17 17 C 1.36940 * 127.83741 * 139.77758 * 16 15 13 18 18 H 1.07997 * 119.99723 * 195.58927 * 17 16 15 19 19 C 1.38814 * 120.00196 * 15.58381 * 17 16 15 20 20 N 1.31617 * 119.99817 * 9.02559 * 19 17 16 21 21 Si 1.86799 * 119.99973 * 189.01530 * 19 17 16 22 22 H 1.48504 * 109.46838 * 94.45947 * 21 19 17 23 23 H 1.48490 * 109.47201 * 214.45988 * 21 19 17 24 24 H 1.48493 * 109.47175 * 334.46481 * 21 19 17 25 25 C 1.48140 * 104.32428 * 319.77196 * 16 15 13 26 26 C 1.52997 * 117.44742 * 174.99906 * 11 10 9 27 27 H 1.08996 * 119.53799 * 355.88366 * 26 11 10 28 28 C 1.53004 * 109.47168 * 274.99661 * 5 4 2 29 29 C 1.53004 * 109.47220 * 305.00641 * 28 5 4 30 30 C 1.52999 * 109.46568 * 65.00324 * 28 5 4 31 31 H 1.09001 * 109.47588 * 239.99841 * 1 2 3 32 32 H 1.09000 * 109.47633 * 0.02562 * 1 2 3 33 33 H 1.09008 * 109.46855 * 119.99955 * 1 2 3 34 34 H 0.96994 * 119.99769 * 0.02562 * 4 2 1 35 35 H 0.96996 * 119.99605 * 0.02562 * 9 7 5 36 36 H 1.09005 * 109.47401 * 300.27730 * 10 9 7 37 37 H 1.08998 * 109.47271 * 60.27632 * 10 9 7 38 38 H 1.09000 * 110.92516 * 328.23041 * 15 13 11 39 39 H 1.08999 * 109.93651 * 205.88623 * 15 13 11 40 40 H 0.96997 * 119.99985 * 180.02562 * 20 19 17 41 41 H 1.08999 * 110.40588 * 280.80451 * 25 16 15 42 42 H 1.08995 * 110.41278 * 158.37274 * 25 16 15 43 43 H 1.08993 * 109.47314 * 185.00112 * 28 5 4 44 44 H 1.08996 * 109.47001 * 59.99214 * 29 28 5 45 45 H 1.09001 * 109.46949 * 179.97438 * 29 28 5 46 46 H 1.09003 * 109.46862 * 299.99623 * 29 28 5 47 47 H 1.08994 * 109.47413 * 60.00408 * 30 28 5 48 48 H 1.09001 * 109.47207 * 180.02562 * 30 28 5 49 49 H 1.09002 * 109.47302 * 299.99769 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1670 0.0011 6 1 4.0089 -0.3252 0.5905 7 6 4.1480 -2.4546 0.6020 8 8 3.3598 -3.2902 0.9910 9 7 5.4731 -2.6780 0.7062 10 6 5.9612 -3.9270 1.2959 11 6 7.4913 -3.9248 1.3011 12 1 7.9591 -2.9433 1.3778 13 6 8.2007 -4.9784 0.4482 14 1 7.6120 -5.6454 -0.1817 15 6 9.7140 -4.6925 0.1090 16 7 10.4683 -5.2608 1.2504 17 6 11.6462 -5.9582 1.2151 18 1 11.9615 -6.5295 2.0757 19 6 12.4350 -5.9309 0.0732 20 7 12.1467 -5.1001 -0.9061 21 14 13.9059 -7.0731 -0.0735 22 1 13.5043 -8.3069 -0.7958 23 1 14.9898 -6.3904 -0.8245 24 1 14.3926 -7.4301 1.2832 25 6 9.6591 -4.9033 2.4387 26 6 8.1958 -5.0973 1.9864 27 1 7.6034 -5.8528 2.5024 28 6 4.1564 -1.0417 -1.4358 29 6 3.5467 -2.1531 -2.2925 30 6 3.7518 0.3202 -2.0037 31 1 -0.3634 -0.5138 0.8900 32 1 -0.3634 1.0276 -0.0005 33 1 -0.3633 -0.5139 -0.8901 34 1 1.6959 -2.0071 0.0005 35 1 6.1035 -2.0098 0.3947 36 1 5.5946 -4.0135 2.3188 37 1 5.6011 -4.7713 0.7082 38 1 9.8989 -3.6215 0.0267 39 1 9.9890 -5.1972 -0.8172 40 1 12.6977 -5.0813 -1.7042 41 1 9.8354 -3.8652 2.7203 42 1 9.8911 -5.5682 3.2706 43 1 5.2427 -1.1307 -1.4445 44 1 2.4604 -2.0640 -2.2837 45 1 3.9101 -2.0635 -3.3163 46 1 3.8349 -3.1233 -1.8879 47 1 4.1862 1.1119 -1.3934 48 1 4.1151 0.4094 -3.0275 49 1 2.6655 0.4093 -1.9950 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675554635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:05 Heat of formation + Delta-G solvation = -45.182949 kcal Electronic energy + Delta-G solvation = -27638.677394 eV Core-core repulsion = 23794.323616 eV Total energy + Delta-G solvation = -3844.353779 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.74638 -40.49929 -39.89746 -37.12466 -36.39789 -35.06877 -34.11401 -32.72857 -30.89124 -29.40524 -28.72765 -28.09058 -27.70988 -26.10196 -22.88701 -22.42764 -21.88139 -21.35592 -20.83488 -20.52770 -18.88543 -18.74402 -17.85114 -17.26414 -16.99060 -16.79936 -16.37065 -16.20832 -15.79728 -15.29484 -15.22101 -14.93585 -14.74214 -14.59849 -14.47879 -14.34324 -13.89023 -13.38024 -13.30707 -13.29403 -13.18195 -13.16093 -12.88600 -12.79920 -12.74674 -12.38090 -12.29250 -12.04692 -11.92215 -11.90575 -11.80114 -11.75613 -11.10199 -10.93623 -10.91315 -10.67309 -10.58396 -10.12082 -10.04114 -8.90665 -7.92271 -5.28393 1.45085 1.46185 1.47515 1.56763 1.64012 1.83357 2.41656 2.48139 2.77434 3.25402 3.50235 3.61417 3.71389 3.72595 3.86673 3.91657 3.96703 4.14964 4.20692 4.28041 4.42050 4.44308 4.47772 4.58567 4.60122 4.68134 4.69576 4.73390 4.78724 4.91991 4.93855 4.97785 5.02717 5.08109 5.13411 5.19112 5.29336 5.35728 5.40091 5.41491 5.42648 5.44490 5.53421 5.67254 6.18419 6.41212 6.54628 7.01470 7.06518 7.25559 7.68217 8.46466 9.21180 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.002210 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.127841 B =12665.433576 C =13219.881534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.508 3.492 3 O -0.580 6.580 4 N -0.706 5.706 5 C 0.135 3.865 6 H 0.110 0.890 7 C 0.517 3.483 8 O -0.568 6.568 9 N -0.710 5.710 10 C 0.165 3.835 11 C -0.114 4.114 12 H 0.108 0.892 13 C -0.176 4.176 14 H 0.117 0.883 15 C 0.189 3.811 16 N -0.621 5.621 17 C -0.240 4.240 18 H 0.080 0.920 19 C -0.063 4.063 20 N -0.946 5.946 21 Si 0.979 3.021 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.267 1.267 25 C 0.148 3.852 26 C -0.160 4.160 27 H 0.126 0.874 28 C -0.100 4.100 29 C -0.144 4.144 30 C -0.131 4.131 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.415 0.585 35 H 0.414 0.586 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.007 0.993 39 H 0.050 0.950 40 H 0.250 0.750 41 H 0.026 0.974 42 H 0.056 0.944 43 H 0.093 0.907 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.044 0.956 47 H 0.050 0.950 48 H 0.059 0.941 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.763 8.459 0.059 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.298 3.702 3 O -0.460 6.460 4 N -0.360 5.360 5 C 0.026 3.974 6 H 0.128 0.872 7 C 0.303 3.697 8 O -0.448 6.448 9 N -0.362 5.362 10 C 0.041 3.959 11 C -0.133 4.133 12 H 0.126 0.874 13 C -0.196 4.196 14 H 0.135 0.865 15 C 0.063 3.937 16 N -0.345 5.345 17 C -0.368 4.368 18 H 0.097 0.903 19 C -0.257 4.257 20 N -0.594 5.594 21 Si 0.807 3.193 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.192 1.192 25 C 0.023 3.977 26 C -0.180 4.180 27 H 0.143 0.857 28 C -0.119 4.119 29 C -0.201 4.201 30 C -0.188 4.188 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.253 0.747 35 H 0.251 0.749 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.025 0.975 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.111 0.889 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.652 8.523 0.240 25.142 hybrid contribution 1.321 -0.635 -0.369 1.512 sum -22.330 7.888 -0.129 23.683 Atomic orbital electron populations 1.21933 0.88381 1.06143 1.06210 1.21438 0.92077 0.82547 0.74183 1.90726 1.71657 1.32543 1.51061 1.45779 1.05268 1.10005 1.74929 1.20820 0.83063 0.95476 0.98044 0.87230 1.20693 0.82555 0.88382 0.78021 1.90683 1.55914 1.47567 1.50599 1.45875 1.06768 1.21186 1.62362 1.20722 0.90157 0.86172 0.98824 1.22448 0.92958 0.95168 1.02718 0.87419 1.24756 0.97224 1.03210 0.94365 0.86508 1.21418 0.85962 0.94457 0.91870 1.45475 1.23032 1.63681 1.02338 1.19381 0.95778 1.21075 1.00610 0.90265 1.25728 1.01485 1.00812 0.97659 1.70079 1.41710 1.39281 1.08344 0.85057 0.78422 0.77903 0.77921 1.21352 1.22038 1.19158 1.21311 0.88790 0.97400 0.90240 1.23712 0.96914 1.01269 0.96081 0.85659 1.21529 1.01278 0.97005 0.92125 1.21793 1.01382 0.96932 1.00018 1.21775 1.01504 0.95090 1.00458 0.87670 0.88890 0.87259 0.74728 0.74878 0.90507 0.91404 0.97527 0.93174 0.94117 0.95612 0.92551 0.88928 0.91959 0.91514 0.93647 0.93052 0.92158 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.32 71.24 0.74 -0.63 16 2 C 0.51 8.40 6.51 87.66 0.57 8.97 16 3 O -0.58 -13.96 14.22 -3.03 -0.04 -14.00 16 4 N -0.71 -11.05 3.93 -446.11 -1.75 -12.81 16 5 C 0.14 2.35 2.36 44.25 0.10 2.46 16 6 H 0.11 2.05 7.58 -2.39 -0.02 2.04 16 7 C 0.52 10.64 6.20 87.66 0.54 11.18 16 8 O -0.57 -14.86 15.84 -3.04 -0.05 -14.90 16 9 N -0.71 -13.52 5.42 -463.06 -2.51 -16.03 16 10 C 0.16 3.64 5.95 86.38 0.51 4.15 16 11 C -0.11 -3.02 5.34 -10.80 -0.06 -3.08 16 12 H 0.11 2.85 8.04 -2.38 -0.02 2.83 16 13 C -0.18 -6.10 7.03 -8.70 -0.06 -6.16 16 14 H 0.12 3.81 8.12 -2.39 -0.02 3.79 16 15 C 0.19 8.95 5.76 87.73 0.51 9.46 16 16 N -0.62 -31.57 3.38 -681.43 -2.30 -33.88 16 17 C -0.24 -13.34 10.35 84.03 0.87 -12.47 16 18 H 0.08 4.23 7.84 -2.91 -0.02 4.21 16 19 C -0.06 -3.56 5.40 84.86 0.46 -3.10 16 20 N -0.95 -56.22 10.86 21.65 0.24 -55.98 16 21 Si 0.98 45.18 29.56 68.60 2.03 47.20 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 C 0.15 5.90 7.04 86.54 0.61 6.51 16 26 C -0.16 -5.09 6.77 -9.89 -0.07 -5.15 16 27 H 0.13 3.48 8.14 -2.39 -0.02 3.46 16 28 C -0.10 -1.57 2.69 -10.79 -0.03 -1.60 16 29 C -0.14 -2.22 8.79 71.98 0.63 -1.59 16 30 C -0.13 -2.26 7.79 71.98 0.56 -1.70 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 0.80 8.12 -2.39 -0.02 0.78 16 33 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 34 H 0.41 5.80 7.79 -92.71 -0.72 5.07 16 35 H 0.41 6.47 7.76 -92.71 -0.72 5.75 16 36 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.07 1.60 7.94 -2.39 -0.02 1.58 16 38 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.05 2.73 6.50 -2.39 -0.02 2.72 16 40 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 41 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 43 H 0.09 1.33 7.43 -2.39 -0.02 1.31 16 44 H 0.06 0.88 7.47 -2.39 -0.02 0.86 16 45 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.04 0.81 7.38 -2.39 -0.02 0.79 16 47 H 0.05 1.01 7.85 -2.39 -0.02 0.99 16 48 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.05 0.95 5.65 -2.39 -0.01 0.94 16 Total: -1.00 -71.66 389.90 1.01 -70.64 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -0.49 Total: 22.51 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 5.89 Total: 7.25 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -6.33 Total: -118.70 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.09 Total: -28.91 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -71.66 1.01 -70.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675554635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.460 kcal (2) G-P(sol) polarization free energy of solvation -71.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds