Wall clock time and date at job start Fri Apr 10 2020 18:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 115.55166 * 2 1 4 4 O 1.21276 * 120.00454 * 214.33171 * 3 2 1 5 5 N 1.34779 * 119.99786 * 34.33014 * 3 2 1 6 6 C 1.46503 * 120.00178 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46978 * 180.02562 * 6 5 3 8 8 H 1.08991 * 110.01908 * 306.38893 * 7 6 5 9 9 C 1.53878 * 110.03376 * 67.83743 * 7 6 5 10 10 C 1.54464 * 106.68737 * 119.44010 * 9 7 6 11 11 C 1.54886 * 104.10083 * 23.34083 * 10 9 7 12 12 H 1.08994 * 110.75726 * 80.70844 * 11 10 9 13 13 N 1.46901 * 110.75362 * 203.89480 * 11 10 9 14 14 C 1.46898 * 111.00189 * 271.06408 * 13 11 10 15 15 C 1.50696 * 109.47176 * 180.02562 * 14 13 11 16 16 O 1.21288 * 120.00279 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99735 * 179.97438 * 15 14 13 18 18 C 1.37105 * 119.99904 * 179.97438 * 17 15 14 19 19 H 1.07991 * 119.99780 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99815 * 179.72596 * 18 17 15 21 21 N 1.31414 * 119.99692 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00158 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46896 * 89.99806 * 22 20 18 24 24 H 1.48499 * 109.47039 * 209.99966 * 22 20 18 25 25 H 1.48502 * 109.46906 * 329.99872 * 22 20 18 26 26 C 1.54276 * 110.02934 * 184.99876 * 7 6 5 27 27 C 1.52998 * 117.51534 * 145.70557 * 2 1 3 28 28 C 1.53002 * 117.49751 * 214.33545 * 2 1 3 29 29 H 1.09002 * 109.46762 * 85.58109 * 1 2 3 30 30 H 1.09003 * 109.47212 * 205.58014 * 1 2 3 31 31 H 1.08993 * 109.47210 * 325.58361 * 1 2 3 32 32 H 0.96998 * 120.00057 * 359.97438 * 5 3 2 33 33 H 1.09001 * 109.46816 * 60.00318 * 6 5 3 34 34 H 1.09000 * 109.46836 * 300.00154 * 6 5 3 35 35 H 1.09003 * 110.02856 * 238.56700 * 9 7 6 36 36 H 1.09000 * 110.02850 * 359.97438 * 9 7 6 37 37 H 1.09004 * 110.40224 * 264.75921 * 10 9 7 38 38 H 1.08992 * 110.66318 * 142.05351 * 10 9 7 39 39 H 1.00907 * 110.99760 * 147.11208 * 13 11 10 40 40 H 1.09000 * 109.46741 * 60.00112 * 14 13 11 41 41 H 1.09002 * 109.46898 * 300.00102 * 14 13 11 42 42 H 0.97005 * 120.00189 * 0.02562 * 17 15 14 43 43 H 0.96995 * 119.99830 * 180.02562 * 21 20 18 44 44 H 1.08996 * 110.48427 * 98.42590 * 26 7 6 45 45 H 1.08999 * 110.59435 * 335.84507 * 26 7 6 46 46 H 1.09004 * 117.49224 * 214.96904 * 27 2 1 47 47 H 1.08992 * 117.50274 * 359.97438 * 27 2 1 48 48 H 1.09004 * 117.50018 * 359.97182 * 28 2 1 49 49 H 1.08993 * 117.49954 * 144.99795 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 8 3.2240 1.5327 -0.5923 5 7 1.6010 2.3833 0.6583 6 6 2.2331 3.7049 0.6588 7 6 1.3786 4.6786 1.4728 8 1 0.3528 4.6723 1.1046 9 6 1.4081 4.2887 2.9610 10 6 2.0083 5.4910 3.7227 11 6 1.7425 6.6990 2.7905 12 1 0.7185 7.0553 2.9022 13 7 2.6999 7.7813 3.0551 14 6 2.1977 8.6849 4.0988 15 6 3.2040 9.7800 4.3419 16 8 4.2376 9.8056 3.7079 17 7 2.9549 10.7316 5.2633 18 6 3.8706 11.7277 5.4849 19 1 4.7913 11.7499 4.9209 20 6 3.6113 12.7120 6.4308 21 7 4.4888 13.6669 6.6428 22 14 2.0153 12.6777 7.4010 23 1 2.2074 11.8851 8.6420 24 1 1.6217 14.0650 7.7555 25 1 0.9481 12.0558 6.5765 26 6 1.9651 6.1024 1.3786 27 6 2.2369 -1.1210 0.7646 28 6 2.2365 -1.1207 -0.7655 29 1 -0.3633 0.0792 -1.0246 30 1 -0.3634 -0.9270 0.4437 31 1 -0.3633 0.8477 0.5808 32 1 0.7658 2.2450 1.1317 33 1 2.3202 4.0664 -0.3658 34 1 3.2253 3.6329 1.1043 35 1 0.3962 4.0933 3.3159 36 1 2.0309 3.4055 3.1033 37 1 3.0792 5.3513 3.8701 38 1 1.5055 5.6298 4.6797 39 1 2.9144 8.2890 2.2099 40 1 2.0407 8.1241 5.0202 41 1 1.2540 9.1243 3.7756 42 1 2.1280 10.7114 5.7702 43 1 4.3079 14.3538 7.3034 44 1 1.4309 6.6862 0.6291 45 1 3.0289 6.0641 1.1439 46 1 3.1721 -0.8750 1.2676 47 1 1.6120 -1.8585 1.2681 48 1 1.6112 -1.8583 -1.2687 49 1 3.1713 -0.8746 -1.2690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691226299.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:27 Heat of formation + Delta-G solvation = -84.977031 kcal Electronic energy + Delta-G solvation = -26537.457423 eV Core-core repulsion = 22691.378043 eV Total energy + Delta-G solvation = -3846.079380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28028 -40.41426 -39.57022 -37.70660 -36.49251 -35.93604 -34.60336 -33.74006 -30.83057 -29.82551 -29.33542 -27.65127 -26.00489 -24.99084 -23.72308 -23.38973 -21.54692 -21.26099 -20.74363 -20.38472 -20.00589 -18.05805 -17.79380 -17.35750 -16.98755 -16.89181 -16.45937 -16.19003 -15.82074 -15.69300 -15.44595 -15.02860 -14.91000 -14.63742 -14.34279 -14.15545 -14.10209 -13.85588 -13.59037 -13.47170 -13.24476 -13.17582 -12.88542 -12.70640 -12.41864 -12.40285 -12.07094 -11.98458 -11.94701 -11.82685 -11.64077 -11.53020 -11.51799 -11.28823 -10.98255 -10.81492 -10.43468 -10.25608 -10.13415 -9.29948 -8.41829 -6.03154 1.29793 1.35892 1.44599 1.44758 1.95038 2.10145 2.23004 2.74190 2.83995 3.14313 3.38180 3.55987 3.59955 3.66779 3.80543 3.89642 3.96958 4.01453 4.16906 4.26980 4.31779 4.42790 4.51477 4.53871 4.59404 4.68892 4.69708 4.70907 4.77456 4.84725 4.87201 4.93721 4.96804 4.97539 5.03182 5.19207 5.20544 5.25038 5.29778 5.37929 5.38879 5.52348 5.53646 5.91850 6.14910 6.42919 6.51614 6.59471 6.87382 7.21002 7.39004 7.96061 8.75940 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.036723 B = 0.001735 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.291150 B =16139.033063 C =16453.169280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.175 4.175 3 C 0.538 3.462 4 O -0.593 6.593 5 N -0.708 5.708 6 C 0.128 3.872 7 C -0.085 4.085 8 H 0.105 0.895 9 C -0.113 4.113 10 C -0.116 4.116 11 C 0.081 3.919 12 H 0.071 0.929 13 N -0.683 5.683 14 C 0.064 3.936 15 C 0.447 3.553 16 O -0.616 6.616 17 N -0.590 5.590 18 C -0.331 4.331 19 H 0.053 0.947 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.257 1.257 24 H -0.275 1.275 25 H -0.230 1.230 26 C -0.117 4.117 27 C -0.140 4.140 28 C -0.153 4.153 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.416 0.584 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.344 0.656 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.390 0.610 43 H 0.279 0.721 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.133 0.867 48 H 0.126 0.874 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.539 -30.529 -8.929 37.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.178 4.178 3 C 0.326 3.674 4 O -0.473 6.473 5 N -0.361 5.361 6 C 0.005 3.995 7 C -0.104 4.104 8 H 0.123 0.877 9 C -0.151 4.151 10 C -0.154 4.154 11 C -0.028 4.028 12 H 0.089 0.911 13 N -0.316 5.316 14 C -0.068 4.068 15 C 0.235 3.765 16 O -0.501 6.501 17 N -0.232 5.232 18 C -0.461 4.461 19 H 0.071 0.929 20 C -0.214 4.214 21 N -0.575 5.575 22 Si 0.787 3.213 23 H -0.181 1.181 24 H -0.200 1.200 25 H -0.153 1.153 26 C -0.156 4.156 27 C -0.177 4.177 28 C -0.190 4.190 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.254 0.746 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.163 0.837 40 H 0.129 0.871 41 H 0.096 0.904 42 H 0.226 0.774 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.151 0.849 48 H 0.144 0.856 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.677 -30.542 -9.225 36.969 hybrid contribution -0.569 1.372 0.265 1.508 sum -19.246 -29.170 -8.960 36.077 Atomic orbital electron populations 1.21393 0.87857 1.04235 1.03178 1.21597 0.97586 0.87774 1.10825 1.20142 0.83708 0.86257 0.77281 1.90691 1.25654 1.84899 1.46102 1.45851 1.27587 1.09314 1.53314 1.21411 0.96198 0.81880 1.00045 1.21844 1.00132 0.92831 0.95587 0.87701 1.22230 1.02245 0.97393 0.93233 1.22419 1.00699 0.93909 0.98391 1.22653 0.93842 0.90956 0.95366 0.91103 1.60118 1.44946 1.13953 1.12569 1.21658 0.94369 0.92136 0.98625 1.21064 0.89194 0.84471 0.81803 1.90545 1.30313 1.77478 1.51733 1.42029 1.19616 1.24791 1.36769 1.19015 1.00832 1.04564 1.21644 0.92878 1.26154 1.02881 0.94283 0.98112 1.69811 1.37863 1.14714 1.35133 0.85337 0.77579 0.79185 0.79228 1.18126 1.19973 1.15302 1.22470 1.01534 0.95412 0.96180 1.23193 1.01741 0.98081 0.94696 1.23075 1.02111 0.98754 0.95095 0.91499 0.89437 0.90747 0.74554 0.92489 0.93366 0.89110 0.91812 0.93125 0.91094 0.83700 0.87086 0.90431 0.77418 0.91127 0.90166 0.92002 0.89868 0.84857 0.85576 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 9.79 71.98 0.70 0.14 16 2 C -0.17 -2.13 2.61 -52.93 -0.14 -2.27 16 3 C 0.54 10.51 7.39 87.66 0.65 11.15 16 4 O -0.59 -17.66 16.26 -3.02 -0.05 -17.71 16 5 N -0.71 -9.79 5.24 -463.06 -2.43 -12.21 16 6 C 0.13 2.15 4.69 86.38 0.40 2.56 16 7 C -0.08 -1.03 2.96 -10.07 -0.03 -1.06 16 8 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 9 C -0.11 -1.37 6.19 31.39 0.19 -1.17 16 10 C -0.12 -2.12 6.52 31.74 0.21 -1.92 16 11 C 0.08 1.59 3.20 46.20 0.15 1.74 16 12 H 0.07 1.15 7.86 -2.39 -0.02 1.13 16 13 N -0.68 -19.99 6.00 -488.94 -2.94 -22.93 16 14 C 0.06 1.95 6.04 85.56 0.52 2.47 16 15 C 0.45 20.40 7.82 87.66 0.69 21.08 16 16 O -0.62 -34.90 15.78 -3.05 -0.05 -34.95 16 17 N -0.59 -28.03 5.09 -306.99 -1.56 -29.59 16 18 C -0.33 -19.65 10.16 84.04 0.85 -18.80 16 19 H 0.05 3.76 7.39 -2.92 -0.02 3.74 16 20 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 21 N -0.93 -56.75 13.96 21.66 0.30 -56.45 16 22 Si 0.97 38.64 27.73 68.60 1.90 40.54 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 25 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 26 C -0.12 -2.00 5.77 31.67 0.18 -1.82 16 27 C -0.14 -1.43 9.88 30.60 0.30 -1.13 16 28 C -0.15 -1.90 9.76 30.60 0.30 -1.61 16 29 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.09 0.16 7.90 -2.39 -0.02 0.14 16 31 H 0.07 0.19 6.38 -2.39 -0.02 0.18 16 32 H 0.42 2.96 6.65 -92.71 -0.62 2.34 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 0.85 7.61 -2.39 -0.02 0.83 16 37 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.34 10.86 8.16 -89.69 -0.73 10.13 16 40 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 41 H 0.08 1.88 8.08 -2.39 -0.02 1.86 16 42 H 0.39 15.17 5.76 -92.70 -0.53 14.64 16 43 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 1.34 7.86 -2.39 -0.02 1.32 16 46 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.13 0.60 8.05 -2.39 -0.02 0.58 16 48 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.08 1.45 7.67 -2.39 -0.02 1.44 16 Total: -1.00 -84.88 396.32 -0.35 -85.23 By element: Atomic # 1 Polarization: 40.09 SS G_CDS: -0.97 Total: 39.12 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 5.44 Total: 8.95 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -6.62 Total: -121.18 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -0.10 Total: -52.66 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.90 Total: 40.54 kcal Total: -84.88 -0.35 -85.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691226299.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.249 kcal (2) G-P(sol) polarization free energy of solvation -84.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds