Wall clock time and date at job start Fri Apr 10 2020 18:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.67165 * 2 1 4 4 O 1.21279 * 119.99895 * 114.10987 * 3 2 1 5 5 N 1.34771 * 119.99862 * 294.38816 * 3 2 1 6 6 C 1.46500 * 120.00087 * 179.72576 * 5 3 2 7 7 C 1.53001 * 109.47205 * 179.97438 * 6 5 3 8 8 H 1.08993 * 110.01778 * 305.06330 * 7 6 5 9 9 C 1.53876 * 110.03128 * 66.45656 * 7 6 5 10 10 C 1.54262 * 106.60003 * 119.28090 * 9 7 6 11 11 C 1.54890 * 104.19486 * 23.61288 * 10 9 7 12 12 H 1.09004 * 110.75924 * 80.55604 * 11 10 9 13 13 N 1.46500 * 110.75488 * 203.74151 * 11 10 9 14 14 C 1.36935 * 119.99924 * 273.54529 * 13 11 10 15 15 H 1.07998 * 120.00041 * 359.97438 * 14 13 11 16 16 C 1.38814 * 119.99948 * 180.02562 * 14 13 11 17 17 N 1.31617 * 120.00167 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00114 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47040 * 59.99527 * 18 16 14 20 20 H 1.48496 * 109.47287 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46616 * 299.99763 * 18 16 14 22 22 C 1.54271 * 110.03108 * 183.61908 * 7 6 5 23 23 C 1.53341 * 109.67301 * 239.49747 * 2 1 3 24 24 C 1.52928 * 108.67121 * 172.70074 * 23 2 1 25 25 N 1.45754 * 110.48534 * 50.75497 * 24 23 2 26 26 C 1.33350 * 124.10827 * 340.90207 * 25 24 23 27 27 O 1.21285 * 118.24679 * 182.26988 * 26 25 24 28 28 C 1.50181 * 123.50688 * 2.26718 * 26 25 24 29 29 H 1.09005 * 109.46626 * 60.00050 * 1 2 3 30 30 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47291 * 300.00625 * 1 2 3 32 32 H 0.97005 * 120.00084 * 359.71746 * 5 3 2 33 33 H 1.08994 * 109.47165 * 299.99706 * 6 5 3 34 34 H 1.09007 * 109.47193 * 59.99743 * 6 5 3 35 35 H 1.09004 * 110.03194 * 238.57165 * 9 7 6 36 36 H 1.09004 * 110.03008 * 359.97438 * 9 7 6 37 37 H 1.09005 * 110.48167 * 142.28600 * 10 9 7 38 38 H 1.08998 * 110.48707 * 264.79676 * 10 9 7 39 39 H 0.97001 * 120.00347 * 93.54159 * 13 11 10 40 40 H 0.96998 * 120.00237 * 180.02562 * 17 16 14 41 41 H 1.09001 * 110.48766 * 335.78703 * 22 7 6 42 42 H 1.09003 * 110.48172 * 98.42974 * 22 7 6 43 43 H 1.09002 * 109.60691 * 292.45602 * 23 2 1 44 44 H 1.09002 * 109.60273 * 52.95045 * 23 2 1 45 45 H 1.08995 * 109.29890 * 171.06629 * 24 23 2 46 46 H 1.08999 * 109.30056 * 290.44245 * 24 23 2 47 47 H 0.96998 * 117.94642 * 160.92399 * 25 24 23 48 48 H 1.08999 * 109.38832 * 222.25774 * 28 26 25 49 49 H 1.08996 * 109.41329 * 102.51839 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0374 1.4191 0.0000 4 8 2.6455 1.8456 0.9587 5 7 1.8104 2.2158 -1.0630 6 6 2.2983 3.5972 -1.0606 7 6 1.9108 4.2773 -2.3752 8 1 2.2768 3.6931 -3.2195 9 6 0.3817 4.4265 -2.4607 10 6 0.0912 5.9383 -2.5592 11 6 1.3995 6.5400 -3.1297 12 1 1.4454 6.4096 -4.2110 13 7 1.5178 7.9563 -2.7742 14 6 0.9390 8.9117 -3.5662 15 1 0.3957 8.6212 -4.4533 16 6 1.0515 10.2537 -3.2296 17 7 1.7140 10.6078 -2.1489 18 14 0.2614 11.5570 -4.3098 19 1 -1.2039 11.3249 -4.3741 20 1 0.5244 12.9013 -3.7363 21 1 0.8352 11.4808 -5.6773 22 6 2.4962 5.7037 -2.4248 23 6 2.0463 -0.7329 -1.2441 24 6 3.5643 -0.5627 -1.3179 25 7 4.1799 -0.9184 -0.0455 26 6 3.5219 -0.9780 1.1128 27 8 4.1489 -1.2452 2.1161 28 6 2.0460 -0.7317 1.2415 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.3240 1.8746 -1.8299 33 1 1.8527 4.1384 -0.2260 34 1 3.3834 3.5990 -0.9570 35 1 0.0056 3.9154 -3.3470 36 1 -0.0843 4.0139 -1.5658 37 1 -0.7414 6.1233 -3.2380 38 1 -0.1227 6.3507 -1.5732 39 1 2.0060 8.2173 -1.9776 40 1 1.7923 11.5455 -1.9135 41 1 2.6730 6.0788 -1.4167 42 1 3.4186 5.7175 -3.0053 43 1 1.8001 -1.7924 -1.1729 44 1 1.5868 -0.3073 -2.1362 45 1 3.9612 -1.2066 -2.1026 46 1 3.7994 0.4750 -1.5543 47 1 5.1277 -1.1245 -0.0410 48 1 1.8565 -0.1230 2.1256 49 1 1.5271 -1.6850 1.3418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691233400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:33 Heat of formation + Delta-G solvation = -112.974006 kcal Electronic energy + Delta-G solvation = -28076.738808 eV Core-core repulsion = 24229.445389 eV Total energy + Delta-G solvation = -3847.293420 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.17235 -40.35456 -39.40686 -37.52885 -36.34912 -35.20244 -34.89177 -32.55621 -30.75676 -30.21894 -29.02190 -28.66200 -26.15292 -24.96748 -24.58730 -23.71714 -21.67385 -21.18823 -20.67637 -19.87453 -19.08582 -18.53035 -17.48668 -17.35711 -17.10853 -16.77657 -16.61368 -16.43207 -15.99014 -15.62115 -15.29101 -15.09991 -14.87190 -14.48714 -14.34873 -14.21560 -13.83280 -13.59330 -13.48423 -13.27584 -13.14051 -12.95295 -12.92674 -12.70598 -12.65495 -12.37000 -12.21411 -12.13747 -11.94923 -11.78503 -11.73347 -11.62757 -11.50791 -11.21345 -10.87678 -10.87511 -10.72655 -10.14600 -10.02442 -8.97381 -7.93430 -5.21652 1.46803 1.49921 1.56020 1.61175 1.63240 2.14116 2.35600 2.57194 3.38570 3.39873 3.53643 3.57539 3.70490 3.77340 3.80645 3.82366 4.02610 4.31880 4.37177 4.41661 4.41879 4.50201 4.56516 4.64813 4.67413 4.70853 4.74068 4.80239 4.82466 4.88053 4.92433 4.95364 5.01618 5.11058 5.15935 5.17071 5.23788 5.33405 5.39607 5.48356 5.51263 5.59351 5.66590 5.79823 6.29289 6.32149 6.58466 7.18264 7.28447 7.34190 8.13717 8.34450 9.30286 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.029565 B = 0.002220 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.846291 B =12607.960423 C =12838.462259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 C 0.514 3.486 4 O -0.589 6.589 5 N -0.704 5.704 6 C 0.134 3.866 7 C -0.081 4.081 8 H 0.110 0.890 9 C -0.106 4.106 10 C -0.140 4.140 11 C 0.164 3.836 12 H 0.055 0.945 13 N -0.738 5.738 14 C -0.237 4.237 15 H 0.078 0.922 16 C -0.081 4.081 17 N -0.974 5.974 18 Si 0.972 3.028 19 H -0.278 1.278 20 H -0.299 1.299 21 H -0.276 1.276 22 C -0.118 4.118 23 C -0.121 4.121 24 C 0.094 3.906 25 N -0.715 5.715 26 C 0.519 3.481 27 O -0.617 6.617 28 C -0.113 4.113 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.419 0.581 33 H 0.043 0.957 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.034 0.966 39 H 0.370 0.630 40 H 0.250 0.750 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.127 0.873 45 H 0.117 0.883 46 H 0.057 0.943 47 H 0.400 0.600 48 H 0.083 0.917 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.463 -30.893 -4.549 31.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 C 0.301 3.699 4 O -0.469 6.469 5 N -0.357 5.357 6 C 0.010 3.990 7 C -0.100 4.100 8 H 0.128 0.872 9 C -0.144 4.144 10 C -0.181 4.181 11 C 0.055 3.945 12 H 0.073 0.927 13 N -0.377 5.377 14 C -0.369 4.369 15 H 0.096 0.904 16 C -0.273 4.273 17 N -0.625 5.625 18 Si 0.801 3.199 19 H -0.204 1.204 20 H -0.225 1.225 21 H -0.202 1.202 22 C -0.157 4.157 23 C -0.159 4.159 24 C -0.029 4.029 25 N -0.365 5.365 26 C 0.308 3.692 27 O -0.500 6.500 28 C -0.153 4.153 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.257 0.743 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.201 0.799 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.130 0.870 44 H 0.145 0.855 45 H 0.135 0.865 46 H 0.075 0.925 47 H 0.234 0.766 48 H 0.101 0.899 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.064 -30.563 -3.571 30.923 hybrid contribution 0.374 1.632 0.191 1.685 sum -2.690 -28.931 -3.380 29.252 Atomic orbital electron populations 1.21893 0.88886 1.05231 1.03524 1.20982 0.99652 0.90006 0.97256 1.21064 0.78428 0.88573 0.81863 1.90761 1.43041 1.76799 1.36316 1.45796 1.57888 1.12002 1.19988 1.21278 0.98482 0.81655 0.97566 1.21821 0.96277 0.94950 0.96923 0.87224 1.22145 0.94501 0.94817 1.02932 1.22903 0.99160 0.96393 0.99613 1.21490 0.93528 0.82536 0.96907 0.92673 1.42645 1.64136 1.01542 1.29393 1.19616 1.25336 0.87514 1.04398 0.90446 1.25590 1.02589 0.99458 0.99673 1.69821 1.48458 1.16031 1.28160 0.85221 0.78361 0.78054 0.78217 1.20377 1.22531 1.20179 1.22486 0.98365 0.94751 1.00078 1.22158 0.93346 1.03435 0.96949 1.21779 0.94907 1.01588 0.84660 1.45489 1.13618 1.69172 1.08199 1.20559 0.91540 0.74581 0.82523 1.90718 1.69638 1.52248 1.37409 1.21616 0.90511 1.03765 0.99447 0.89427 0.88221 0.93199 0.74327 0.93881 0.92752 0.88919 0.91371 0.93082 0.94740 0.79882 0.94179 0.93309 0.91209 0.87018 0.85533 0.86537 0.92485 0.76565 0.89899 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.45 71.98 0.61 -0.12 16 2 C -0.08 -0.78 0.66 -52.79 -0.03 -0.81 16 3 C 0.51 9.76 4.82 87.66 0.42 10.18 16 4 O -0.59 -18.59 15.33 -3.03 -0.05 -18.64 16 5 N -0.70 -9.93 5.05 -463.06 -2.34 -12.27 16 6 C 0.13 2.82 4.70 86.38 0.41 3.23 16 7 C -0.08 -1.56 2.98 -10.07 -0.03 -1.59 16 8 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 9 C -0.11 -2.10 6.13 31.32 0.19 -1.91 16 10 C -0.14 -4.49 6.51 31.67 0.21 -4.28 16 11 C 0.16 6.05 3.54 46.28 0.16 6.21 16 12 H 0.06 2.01 8.12 -2.38 -0.02 1.99 16 13 N -0.74 -37.08 5.25 -316.85 -1.66 -38.74 16 14 C -0.24 -13.05 9.98 84.03 0.84 -12.21 16 15 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 16 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 17 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 18 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 C -0.12 -3.48 5.96 31.67 0.19 -3.29 16 23 C -0.12 -0.33 4.72 30.68 0.14 -0.19 16 24 C 0.09 0.67 6.60 86.50 0.57 1.24 16 25 N -0.72 -11.30 5.44 -467.30 -2.54 -13.84 16 26 C 0.52 12.04 6.95 87.72 0.61 12.65 16 27 O -0.62 -20.93 17.78 -3.05 -0.05 -20.98 16 28 C -0.11 -1.87 4.47 29.71 0.13 -1.74 16 29 H 0.09 0.16 8.00 -2.38 -0.02 0.14 16 30 H 0.10 0.05 8.14 -2.39 -0.02 0.04 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.42 2.55 7.46 -92.70 -0.69 1.86 16 33 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.27 7.58 -2.39 -0.02 1.25 16 37 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.37 20.33 7.72 -92.71 -0.72 19.62 16 40 H 0.25 15.12 8.31 -92.71 -0.77 14.34 16 41 H 0.05 1.64 7.73 -2.39 -0.02 1.63 16 42 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.11 -0.08 8.12 -2.39 -0.02 -0.10 16 44 H 0.13 -0.44 7.57 -2.39 -0.02 -0.45 16 45 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 46 H 0.06 0.56 7.30 -2.39 -0.02 0.55 16 47 H 0.40 6.11 8.80 -92.71 -0.82 5.29 16 48 H 0.08 1.87 7.65 -2.39 -0.02 1.86 16 49 H 0.14 1.32 8.10 -2.39 -0.02 1.30 16 Total: -1.00 -86.25 386.47 -0.71 -86.96 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -1.26 Total: 26.48 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 4.89 Total: 3.14 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -6.26 Total: -125.09 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -0.10 Total: -39.62 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -86.25 -0.71 -86.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691233400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.013 kcal (2) G-P(sol) polarization free energy of solvation -86.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds