Wall clock time and date at job start Fri Apr 10 2020 18:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99645 * 2 1 4 4 H 1.48495 * 109.46803 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47131 * 300.00256 * 3 2 1 6 6 H 1.48497 * 109.46834 * 60.00315 * 3 2 1 7 7 C 1.38808 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00068 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00293 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.80840 * 325.52347 * 10 9 7 12 12 C 1.53481 * 109.64369 * 204.99985 * 10 9 7 13 13 C 1.52466 * 109.15318 * 126.09277 * 12 10 9 14 14 C 1.53122 * 109.66630 * 43.92622 * 13 12 10 15 15 C 1.53431 * 109.34494 * 77.05168 * 14 13 12 16 16 C 1.53420 * 108.50410 * 287.65536 * 15 14 13 17 17 N 1.46068 * 110.01139 * 316.41271 * 16 15 14 18 18 C 1.34774 * 120.17263 * 292.95494 * 17 16 15 19 19 O 1.21286 * 120.00383 * 354.87294 * 18 17 16 20 20 C 1.50700 * 119.99547 * 174.88054 * 18 17 16 21 21 N 1.46503 * 109.46958 * 185.02839 * 20 18 17 22 22 C 1.34773 * 119.99962 * 179.97438 * 21 20 18 23 23 O 1.21284 * 120.00300 * 0.02562 * 22 21 20 24 24 C 1.50708 * 119.99913 * 179.97438 * 22 21 20 25 25 C 1.52992 * 117.49893 * 248.74981 * 24 22 21 26 26 C 1.53005 * 117.49762 * 180.09004 * 24 22 21 27 27 C 1.47091 * 119.66499 * 113.23179 * 17 16 15 28 28 H 0.96994 * 120.00009 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99924 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.52404 * 6.19251 * 12 10 9 31 31 H 1.08994 * 109.52991 * 245.99319 * 12 10 9 32 32 H 1.08997 * 109.44130 * 283.87339 * 13 12 10 33 33 H 1.08990 * 109.40967 * 163.96597 * 13 12 10 34 34 H 1.09003 * 109.49395 * 317.09262 * 14 13 12 35 35 H 1.08997 * 109.51674 * 197.02916 * 14 13 12 36 36 H 1.09001 * 109.63009 * 167.95513 * 15 14 13 37 37 H 1.09000 * 109.79488 * 47.46397 * 15 14 13 38 38 H 1.09002 * 109.35965 * 76.53876 * 16 15 14 39 39 H 1.08990 * 109.36914 * 196.27312 * 16 15 14 40 40 H 1.08996 * 109.47089 * 305.02763 * 20 18 17 41 41 H 1.08999 * 109.47531 * 65.02796 * 20 18 17 42 42 H 0.97001 * 120.00376 * 0.02562 * 21 20 18 43 43 H 1.08994 * 115.54604 * 34.42526 * 24 22 21 44 44 H 1.08994 * 117.50255 * 0.02562 * 25 24 22 45 45 H 1.09002 * 117.49826 * 145.02567 * 25 24 22 46 46 H 1.08999 * 117.49866 * 214.98598 * 26 24 22 47 47 H 1.09001 * 117.49579 * 359.97438 * 26 24 22 48 48 H 1.09009 * 109.87864 * 168.17439 * 27 17 16 49 49 H 1.08996 * 109.93602 * 47.11240 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9751 -3.5539 -0.5810 12 6 1.1817 -4.7586 -0.6114 13 6 1.9454 -5.4345 -1.7448 14 6 3.3903 -5.6943 -1.3095 15 6 3.4289 -6.9117 -0.3765 16 6 2.8240 -6.5091 0.9747 17 7 3.3258 -5.1974 1.3761 18 6 4.6268 -5.0366 1.6890 19 8 5.3645 -5.9985 1.7283 20 6 5.1648 -3.6616 1.9904 21 7 6.6155 -3.7358 2.1810 22 6 7.3163 -2.6194 2.4621 23 8 6.7459 -1.5533 2.5577 24 6 8.8085 -2.6958 2.6587 25 6 9.3488 -2.4493 4.0686 26 6 9.5467 -1.3941 2.9775 27 6 2.4028 -4.0540 1.4429 28 1 -0.4850 0.8400 0.0004 29 1 0.3557 -2.3881 -0.0005 30 1 0.2638 -4.3193 -1.0019 31 1 0.9372 -5.4956 0.1534 32 1 1.9416 -4.7870 -2.6215 33 1 1.4650 -6.3813 -1.9910 34 1 3.7743 -4.8204 -0.7832 35 1 4.0056 -5.8894 -2.1877 36 1 4.4612 -7.2318 -0.2347 37 1 2.8490 -7.7269 -0.8092 38 1 1.7382 -6.4692 0.8870 39 1 3.0987 -7.2472 1.7281 40 1 4.9414 -2.9936 1.1586 41 1 4.6982 -3.2797 2.8984 42 1 7.0719 -4.5883 2.1042 43 1 9.3268 -3.4303 2.0423 44 1 8.6251 -2.2323 4.8541 45 1 10.2229 -3.0214 4.3798 46 1 10.5507 -1.2724 2.5712 47 1 8.9530 -0.4824 3.0446 48 1 2.8838 -3.2186 1.9519 49 1 1.4954 -4.3396 1.9749 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691613311.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:55 Heat of formation + Delta-G solvation = -20.169441 kcal Electronic energy + Delta-G solvation = -29042.112135 eV Core-core repulsion = 25198.843024 eV Total energy + Delta-G solvation = -3843.269112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.65031 -39.73131 -37.85161 -36.27470 -34.81098 -34.25005 -34.12079 -32.11846 -29.85276 -28.73826 -26.78122 -26.59096 -24.23905 -23.67862 -22.60133 -22.20738 -21.29259 -20.24801 -19.77191 -18.68554 -17.63508 -17.20532 -16.56126 -16.39910 -15.84416 -15.43186 -15.31136 -15.17431 -14.73260 -14.59065 -14.16760 -13.94741 -13.62712 -13.31988 -13.17836 -12.94133 -12.62287 -12.54526 -12.22131 -12.12503 -11.74811 -11.72449 -11.66721 -11.20381 -11.05180 -10.90658 -10.79952 -10.76757 -10.68176 -10.47555 -10.15648 -10.03658 -9.88683 -9.82603 -9.62173 -9.52479 -9.15812 -9.10391 -8.46211 -7.02012 -5.82727 -3.12815 2.47970 2.61882 2.81608 3.37060 3.44100 3.51558 3.55374 3.71915 4.46632 4.56490 4.60278 4.65812 4.71404 4.96129 5.01715 5.07731 5.11481 5.22095 5.37509 5.39601 5.40704 5.47561 5.52892 5.57100 5.61278 5.65159 5.69835 5.76905 5.82697 5.88359 5.97050 6.00711 6.02125 6.13413 6.18938 6.25926 6.32038 6.38701 6.48963 6.57802 6.64347 6.75122 6.94693 7.46995 7.51831 7.67882 8.16508 8.25756 8.35406 9.47898 10.01700 10.35590 11.39135 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.007858 B = 0.005346 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.351133 B = 5235.959161 C = 8245.503519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.006 4.006 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.158 3.842 11 H 0.064 0.936 12 C -0.136 4.136 13 C -0.112 4.112 14 C -0.131 4.131 15 C -0.132 4.132 16 C 0.111 3.889 17 N -0.595 5.595 18 C 0.512 3.488 19 O -0.551 6.551 20 C 0.098 3.902 21 N -0.714 5.714 22 C 0.540 3.460 23 O -0.533 6.533 24 C -0.192 4.192 25 C -0.153 4.153 26 C -0.148 4.148 27 C 0.075 3.925 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.410 0.590 43 H 0.124 0.876 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.102 0.898 47 H 0.109 0.891 48 H 0.089 0.911 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.028 -13.249 3.601 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.047 3.953 11 H 0.082 0.918 12 C -0.174 4.174 13 C -0.150 4.150 14 C -0.169 4.169 15 C -0.171 4.171 16 C -0.011 4.011 17 N -0.327 5.327 18 C 0.300 3.700 19 O -0.430 6.430 20 C -0.029 4.029 21 N -0.369 5.369 22 C 0.326 3.674 23 O -0.409 6.409 24 C -0.213 4.213 25 C -0.191 4.191 26 C -0.185 4.185 27 C -0.050 4.050 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.117 0.883 42 H 0.247 0.753 43 H 0.142 0.858 44 H 0.118 0.882 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.128 0.872 48 H 0.107 0.893 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.063 -12.829 3.667 17.988 hybrid contribution 0.126 0.522 -0.095 0.545 sum 12.190 -12.307 3.572 17.687 Atomic orbital electron populations 1.69665 1.05135 1.25728 1.57208 1.24711 0.95433 0.97710 1.02378 0.86197 0.79279 0.84139 0.77182 1.20176 1.21866 1.21745 1.19261 0.91033 0.83986 1.43399 0.91074 1.42545 1.05753 0.99567 1.87936 1.21108 0.95524 0.86540 0.92118 0.91801 1.22253 0.99415 0.97850 0.97871 1.21469 0.95190 0.99806 0.98547 1.21975 0.97101 0.98987 0.98812 1.22071 1.01784 0.98009 0.95221 1.21656 0.99540 0.83878 0.96054 1.48049 1.08119 1.11073 1.65494 1.20406 0.82451 0.90499 0.76666 1.90627 1.57396 1.41490 1.53446 1.21186 0.81687 0.95423 1.04603 1.45618 1.07225 1.11431 1.72599 1.19656 0.88050 0.83489 0.76235 1.90772 1.71217 1.28637 1.50262 1.22147 0.92604 1.04030 1.02516 1.22947 1.02826 1.02673 0.90645 1.22979 1.00993 0.93241 1.01312 1.23356 0.92800 0.86642 1.02172 0.93479 0.78059 0.91289 0.91921 0.92109 0.92639 0.90155 0.92881 0.91347 0.91347 0.89024 0.91830 0.87735 0.88331 0.75311 0.85820 0.88214 0.87834 0.87937 0.87244 0.89260 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.90 22.44 29.55 -169.99 -5.02 17.42 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 7 C -0.25 -6.48 9.94 -15.06 -0.15 -6.63 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -16.48 5.08 -52.87 -0.27 -16.74 16 10 C 0.16 2.79 2.40 -67.36 -0.16 2.63 16 11 H 0.06 1.21 5.39 -51.93 -0.28 0.93 16 12 C -0.14 -2.01 5.23 -26.75 -0.14 -2.15 16 13 C -0.11 -1.49 5.67 -26.94 -0.15 -1.64 16 14 C -0.13 -1.74 5.44 -26.44 -0.14 -1.88 16 15 C -0.13 -1.57 5.55 -26.29 -0.15 -1.72 16 16 C 0.11 1.35 5.12 -4.06 -0.02 1.33 16 17 N -0.60 -8.22 1.71 -172.91 -0.30 -8.52 16 18 C 0.51 7.53 6.88 -10.99 -0.08 7.46 16 19 O -0.55 -8.78 14.74 5.55 0.08 -8.69 16 20 C 0.10 1.45 4.52 -5.19 -0.02 1.43 16 21 N -0.71 -9.67 5.52 -61.47 -0.34 -10.01 16 22 C 0.54 7.84 7.61 -10.98 -0.08 7.75 16 23 O -0.53 -10.05 16.26 5.55 0.09 -9.96 16 24 C -0.19 -2.02 6.19 -91.77 -0.57 -2.59 16 25 C -0.15 -1.36 10.24 -26.70 -0.27 -1.63 16 26 C -0.15 -1.45 10.05 -26.69 -0.27 -1.72 16 27 C 0.08 1.17 5.37 -3.39 -0.02 1.15 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.39 9.48 7.52 -40.82 -0.31 9.17 16 30 H 0.07 1.12 7.61 -51.93 -0.39 0.73 16 31 H 0.06 0.81 4.49 -51.93 -0.23 0.58 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.64 7.85 -51.93 -0.41 0.23 16 34 H 0.08 1.23 3.67 -51.93 -0.19 1.03 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.90 7.39 -51.93 -0.38 0.51 16 37 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 38 H 0.09 1.02 5.07 -51.93 -0.26 0.75 16 39 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 40 H 0.10 1.73 7.99 -51.93 -0.41 1.32 16 41 H 0.10 1.48 7.63 -51.93 -0.40 1.08 16 42 H 0.41 4.95 7.45 -40.82 -0.30 4.65 16 43 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.11 1.29 7.67 -51.93 -0.40 0.89 16 48 H 0.09 1.51 6.09 -51.92 -0.32 1.20 16 49 H 0.07 1.09 7.97 -51.93 -0.41 0.68 16 LS Contribution 377.70 15.07 5.69 5.69 Total: -1.00 -31.48 377.70 -9.27 -40.76 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -7.61 Total: 14.97 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -2.32 Total: 1.54 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -0.18 Total: -61.72 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.17 Total: -18.66 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.48 -9.27 -40.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691613311.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.588 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds