Wall clock time and date at job start Fri Apr 10 2020 18:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99645 * 2 1 4 4 H 1.48495 * 109.46803 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47131 * 300.00256 * 3 2 1 6 6 H 1.48497 * 109.46834 * 60.00315 * 3 2 1 7 7 C 1.38808 * 120.00471 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00068 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00293 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.80840 * 325.52347 * 10 9 7 12 12 C 1.53481 * 109.64369 * 204.99985 * 10 9 7 13 13 C 1.52466 * 109.15318 * 126.09277 * 12 10 9 14 14 C 1.53122 * 109.66630 * 43.92622 * 13 12 10 15 15 C 1.53431 * 109.34494 * 77.05168 * 14 13 12 16 16 C 1.53420 * 108.50410 * 287.65536 * 15 14 13 17 17 N 1.46068 * 110.01139 * 316.41271 * 16 15 14 18 18 C 1.34774 * 120.17263 * 292.95494 * 17 16 15 19 19 O 1.21286 * 120.00383 * 354.87294 * 18 17 16 20 20 C 1.50700 * 119.99547 * 174.88054 * 18 17 16 21 21 N 1.46503 * 109.46958 * 185.02839 * 20 18 17 22 22 C 1.34773 * 119.99962 * 179.97438 * 21 20 18 23 23 O 1.21284 * 120.00300 * 0.02562 * 22 21 20 24 24 C 1.50708 * 119.99913 * 179.97438 * 22 21 20 25 25 C 1.52992 * 117.49893 * 248.74981 * 24 22 21 26 26 C 1.53005 * 117.49762 * 180.09004 * 24 22 21 27 27 C 1.47091 * 119.66499 * 113.23179 * 17 16 15 28 28 H 0.96994 * 120.00009 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99924 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.52404 * 6.19251 * 12 10 9 31 31 H 1.08994 * 109.52991 * 245.99319 * 12 10 9 32 32 H 1.08997 * 109.44130 * 283.87339 * 13 12 10 33 33 H 1.08990 * 109.40967 * 163.96597 * 13 12 10 34 34 H 1.09003 * 109.49395 * 317.09262 * 14 13 12 35 35 H 1.08997 * 109.51674 * 197.02916 * 14 13 12 36 36 H 1.09001 * 109.63009 * 167.95513 * 15 14 13 37 37 H 1.09000 * 109.79488 * 47.46397 * 15 14 13 38 38 H 1.09002 * 109.35965 * 76.53876 * 16 15 14 39 39 H 1.08990 * 109.36914 * 196.27312 * 16 15 14 40 40 H 1.08996 * 109.47089 * 305.02763 * 20 18 17 41 41 H 1.08999 * 109.47531 * 65.02796 * 20 18 17 42 42 H 0.97001 * 120.00376 * 0.02562 * 21 20 18 43 43 H 1.08994 * 115.54604 * 34.42526 * 24 22 21 44 44 H 1.08994 * 117.50255 * 0.02562 * 25 24 22 45 45 H 1.09002 * 117.49826 * 145.02567 * 25 24 22 46 46 H 1.08999 * 117.49866 * 214.98598 * 26 24 22 47 47 H 1.09001 * 117.49579 * 359.97438 * 26 24 22 48 48 H 1.09009 * 109.87864 * 168.17439 * 27 17 16 49 49 H 1.08996 * 109.93602 * 47.11240 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9751 -3.5539 -0.5810 12 6 1.1817 -4.7586 -0.6114 13 6 1.9454 -5.4345 -1.7448 14 6 3.3903 -5.6943 -1.3095 15 6 3.4289 -6.9117 -0.3765 16 6 2.8240 -6.5091 0.9747 17 7 3.3258 -5.1974 1.3761 18 6 4.6268 -5.0366 1.6890 19 8 5.3645 -5.9985 1.7283 20 6 5.1648 -3.6616 1.9904 21 7 6.6155 -3.7358 2.1810 22 6 7.3163 -2.6194 2.4621 23 8 6.7459 -1.5533 2.5577 24 6 8.8085 -2.6958 2.6587 25 6 9.3488 -2.4493 4.0686 26 6 9.5467 -1.3941 2.9775 27 6 2.4028 -4.0540 1.4429 28 1 -0.4850 0.8400 0.0004 29 1 0.3557 -2.3881 -0.0005 30 1 0.2638 -4.3193 -1.0019 31 1 0.9372 -5.4956 0.1534 32 1 1.9416 -4.7870 -2.6215 33 1 1.4650 -6.3813 -1.9910 34 1 3.7743 -4.8204 -0.7832 35 1 4.0056 -5.8894 -2.1877 36 1 4.4612 -7.2318 -0.2347 37 1 2.8490 -7.7269 -0.8092 38 1 1.7382 -6.4692 0.8870 39 1 3.0987 -7.2472 1.7281 40 1 4.9414 -2.9936 1.1586 41 1 4.6982 -3.2797 2.8984 42 1 7.0719 -4.5883 2.1042 43 1 9.3268 -3.4303 2.0423 44 1 8.6251 -2.2323 4.8541 45 1 10.2229 -3.0214 4.3798 46 1 10.5507 -1.2724 2.5712 47 1 8.9530 -0.4824 3.0446 48 1 2.8838 -3.2186 1.9519 49 1 1.4954 -4.3396 1.9749 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691613311.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:30:55 Heat of formation + Delta-G solvation = -40.450151 kcal Electronic energy + Delta-G solvation = -29042.991573 eV Core-core repulsion = 25198.843024 eV Total energy + Delta-G solvation = -3844.148549 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85685 -40.87437 -39.11046 -37.18093 -36.37341 -35.57012 -35.29937 -33.82667 -31.38948 -30.04365 -28.11411 -27.73886 -25.88147 -24.87143 -23.57096 -23.31949 -22.48172 -21.39066 -21.03182 -19.84057 -19.18228 -18.64945 -17.76701 -17.61873 -17.07762 -16.78710 -16.46501 -16.35195 -16.07424 -15.72243 -15.57587 -15.39828 -15.00506 -14.81299 -14.41841 -14.25749 -13.83404 -13.60180 -13.55408 -13.39074 -13.10698 -12.90814 -12.89528 -12.64097 -12.45543 -12.30572 -12.20518 -12.13998 -11.80882 -11.58129 -11.57386 -11.49176 -11.27938 -11.07311 -11.05042 -10.90271 -10.70400 -10.34803 -9.81075 -8.92378 -7.96463 -5.22896 1.34202 1.41785 1.43773 1.46193 1.54376 1.67202 2.23900 2.54602 2.89429 3.25676 3.38632 3.66124 3.81273 3.84115 3.96628 3.99335 4.03238 4.09620 4.12659 4.15342 4.19498 4.26783 4.31420 4.41371 4.46707 4.62781 4.68298 4.72997 4.77673 4.88124 4.89478 4.98998 5.01099 5.05955 5.13969 5.18071 5.22806 5.24800 5.31939 5.39035 5.42230 5.52889 5.59984 5.67753 6.22782 6.29838 6.40827 6.96042 7.12478 7.35273 8.10088 8.32051 9.26467 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.007858 B = 0.005346 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.351133 B = 5235.959161 C = 8245.503519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.061 4.061 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.294 1.294 7 C -0.232 4.232 8 H 0.067 0.933 9 N -0.726 5.726 10 C 0.156 3.844 11 H 0.051 0.949 12 C -0.129 4.129 13 C -0.106 4.106 14 C -0.129 4.129 15 C -0.124 4.124 16 C 0.106 3.894 17 N -0.588 5.588 18 C 0.518 3.482 19 O -0.558 6.558 20 C 0.100 3.900 21 N -0.704 5.704 22 C 0.533 3.467 23 O -0.586 6.586 24 C -0.200 4.200 25 C -0.136 4.136 26 C -0.153 4.153 27 C 0.089 3.911 28 H 0.251 0.749 29 H 0.376 0.624 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.419 0.581 43 H 0.154 0.846 44 H 0.086 0.914 45 H 0.138 0.862 46 H 0.131 0.869 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.411 -15.885 3.776 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.254 4.254 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.364 4.364 8 H 0.085 0.915 9 N -0.367 5.367 10 C 0.047 3.953 11 H 0.069 0.931 12 C -0.166 4.166 13 C -0.144 4.144 14 C -0.167 4.167 15 C -0.162 4.162 16 C -0.015 4.015 17 N -0.320 5.320 18 C 0.306 3.694 19 O -0.438 6.438 20 C -0.027 4.027 21 N -0.359 5.359 22 C 0.322 3.678 23 O -0.466 6.466 24 C -0.221 4.221 25 C -0.174 4.174 26 C -0.190 4.190 27 C -0.037 4.037 28 H 0.060 0.940 29 H 0.209 0.791 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.126 0.874 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.258 0.742 43 H 0.171 0.829 44 H 0.104 0.896 45 H 0.156 0.844 46 H 0.149 0.851 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.489 -15.544 3.837 20.935 hybrid contribution -0.245 1.244 -0.162 1.279 sum 13.244 -14.299 3.675 19.834 Atomic orbital electron populations 1.69766 1.06071 1.25768 1.59578 1.25267 0.96093 1.00125 1.03961 0.85389 0.78095 0.81474 0.76767 1.20322 1.21855 1.22134 1.19471 0.90962 0.85320 1.40619 0.91531 1.42666 1.05452 1.00514 1.88062 1.21297 0.95119 0.85485 0.93396 0.93108 1.22186 0.98226 0.97252 0.98972 1.21431 0.95202 1.00631 0.97130 1.21912 0.96946 0.98698 0.99133 1.22025 1.01641 0.97953 0.94589 1.21885 1.00470 0.82692 0.96502 1.47944 1.07498 1.11346 1.65165 1.20242 0.82645 0.89991 0.76557 1.90622 1.57547 1.41583 1.54009 1.21036 0.82775 0.95428 1.03473 1.45591 1.06625 1.11810 1.71877 1.20469 0.89840 0.82653 0.74876 1.90745 1.72657 1.30487 1.52695 1.22239 0.89647 1.05513 1.04673 1.23075 1.03201 1.01823 0.89268 1.23050 1.01740 0.91982 1.02264 1.22963 0.93457 0.86969 1.00268 0.94023 0.79072 0.92718 0.89305 0.93723 0.89732 0.92656 0.92388 0.92472 0.88563 0.87387 0.91015 0.89994 0.88866 0.74191 0.82860 0.89555 0.84405 0.85063 0.90073 0.91093 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.39 13.06 21.65 0.28 -57.11 16 2 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 3 Si 0.95 47.39 29.55 68.60 2.03 49.42 16 4 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 5 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 7 C -0.23 -12.48 9.94 84.03 0.84 -11.64 16 8 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 9 N -0.73 -33.92 5.08 -321.19 -1.63 -35.55 16 10 C 0.16 5.48 2.40 45.36 0.11 5.59 16 11 H 0.05 1.95 5.39 -2.39 -0.01 1.94 16 12 C -0.13 -3.58 5.23 30.58 0.16 -3.42 16 13 C -0.11 -2.58 5.67 30.46 0.17 -2.41 16 14 C -0.13 -3.17 5.44 30.78 0.17 -3.00 16 15 C -0.12 -2.54 5.55 30.88 0.17 -2.37 16 16 C 0.11 2.24 5.12 86.60 0.44 2.69 16 17 N -0.59 -15.45 1.71 -819.36 -1.40 -16.85 16 18 C 0.52 14.86 6.88 87.66 0.60 15.46 16 19 O -0.56 -16.91 14.74 -3.05 -0.04 -16.96 16 20 C 0.10 3.06 4.52 85.63 0.39 3.45 16 21 N -0.70 -19.10 5.52 -466.78 -2.58 -21.68 16 22 C 0.53 15.68 7.61 87.66 0.67 16.35 16 23 O -0.59 -23.16 16.26 -3.04 -0.05 -23.21 16 24 C -0.20 -3.91 6.19 -11.54 -0.07 -3.98 16 25 C -0.14 -2.13 10.24 30.62 0.31 -1.82 16 26 C -0.15 -2.81 10.05 30.62 0.31 -2.51 16 27 C 0.09 2.71 5.37 86.48 0.46 3.18 16 28 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.38 18.84 7.52 -92.71 -0.70 18.14 16 30 H 0.05 1.72 7.61 -2.39 -0.02 1.70 16 31 H 0.09 2.01 4.49 -2.39 -0.01 2.00 16 32 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.61 7.85 -2.39 -0.02 1.59 16 34 H 0.06 1.65 3.67 -2.39 -0.01 1.64 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.34 7.39 -2.39 -0.02 1.32 16 37 H 0.10 1.50 7.90 -2.39 -0.02 1.48 16 38 H 0.11 1.95 5.07 -2.39 -0.01 1.94 16 39 H 0.07 1.48 8.06 -2.39 -0.02 1.46 16 40 H 0.08 2.88 7.99 -2.39 -0.02 2.86 16 41 H 0.09 2.92 7.63 -2.39 -0.02 2.90 16 42 H 0.42 9.72 7.45 -92.71 -0.69 9.03 16 43 H 0.15 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.08 1.98 7.67 -2.39 -0.02 1.96 16 48 H 0.07 2.46 6.09 -2.38 -0.01 2.44 16 49 H 0.09 2.47 7.97 -2.39 -0.02 2.45 16 Total: -1.00 -70.12 377.70 1.40 -68.73 By element: Atomic # 1 Polarization: 41.07 SS G_CDS: -0.40 Total: 40.67 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 5.20 Total: 12.54 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -5.33 Total: -131.19 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.09 Total: -40.16 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -70.12 1.40 -68.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691613311.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.275 kcal (2) G-P(sol) polarization free energy of solvation -70.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds