Wall clock time and date at job start Fri Apr 10 2020 18:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99561 * 2 1 4 4 H 1.48504 * 109.46934 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47208 * 299.99789 * 3 2 1 6 6 H 1.48501 * 109.47595 * 60.00118 * 3 2 1 7 7 C 1.38807 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00211 * 197.02952 * 7 2 1 9 9 N 1.36941 * 119.99553 * 17.03314 * 7 2 1 10 10 C 1.47078 * 120.87957 * 206.58258 * 9 7 2 11 11 C 1.53240 * 108.51952 * 231.16479 * 10 9 7 12 12 N 1.46902 * 109.33557 * 306.16420 * 11 10 9 13 13 C 1.46902 * 110.99890 * 187.25799 * 12 11 10 14 14 C 1.52996 * 109.47179 * 170.00550 * 13 12 11 15 15 C 1.53002 * 109.47053 * 179.97438 * 14 13 12 16 16 N 1.46510 * 109.46941 * 179.97438 * 15 14 13 17 17 C 1.34775 * 119.99637 * 179.97438 * 16 15 14 18 18 O 1.21281 * 120.00325 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99586 * 180.02562 * 17 16 15 20 20 H 1.08998 * 115.51214 * 34.41888 * 19 17 16 21 21 C 1.53004 * 117.43129 * 179.78867 * 19 17 16 22 22 H 1.08998 * 119.80781 * 354.34807 * 21 19 17 23 23 C 1.54475 * 118.06435 * 198.08709 * 21 19 17 24 24 O 1.44426 * 104.80333 * 321.12513 * 23 21 19 25 25 C 1.44427 * 105.27894 * 319.49100 * 24 23 21 26 26 C 1.52998 * 117.43271 * 249.04738 * 19 17 16 27 27 H 1.09004 * 119.80979 * 4.62983 * 26 19 17 28 28 C 1.46893 * 111.27041 * 63.10873 * 12 11 10 29 29 C 1.47077 * 120.88275 * 26.55493 * 9 7 2 30 30 H 0.96999 * 120.00226 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.63244 * 111.45106 * 10 9 7 32 32 H 1.09007 * 109.78630 * 350.96164 * 10 9 7 33 33 H 1.08998 * 109.49470 * 186.21037 * 11 10 9 34 34 H 1.08994 * 109.49653 * 66.12839 * 11 10 9 35 35 H 1.09000 * 109.47474 * 49.99509 * 13 12 11 36 36 H 1.09001 * 109.46867 * 289.99917 * 13 12 11 37 37 H 1.09000 * 109.47598 * 59.99666 * 14 13 12 38 38 H 1.09001 * 109.46704 * 299.99467 * 14 13 12 39 39 H 1.09001 * 109.47445 * 59.99869 * 15 14 13 40 40 H 1.08992 * 109.46908 * 299.99329 * 15 14 13 41 41 H 0.97001 * 119.99681 * 0.02562 * 16 15 14 42 42 H 1.08991 * 110.37704 * 79.96273 * 23 21 19 43 43 H 1.09006 * 110.37095 * 202.30381 * 23 21 19 44 44 H 1.08993 * 110.37417 * 159.33857 * 25 24 23 45 45 H 1.08990 * 110.37208 * 281.57069 * 25 24 23 46 46 H 1.09008 * 109.49257 * 56.84824 * 28 12 11 47 47 H 1.09001 * 109.49972 * 176.93213 * 28 12 11 48 48 H 1.09005 * 109.62626 * 248.54834 * 29 9 7 49 49 H 1.08996 * 109.63149 * 9.12803 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0548 -1.2224 0.2744 9 7 1.3706 -2.3621 -0.3464 10 6 1.8309 -3.6608 0.1681 11 6 2.0026 -4.6198 -1.0147 12 7 0.7550 -4.6653 -1.7890 13 6 0.8187 -5.7003 -2.8296 14 6 -0.5687 -5.8900 -3.4458 15 6 -0.5023 -6.9675 -4.5300 16 7 -1.8310 -7.1496 -5.1197 17 6 -2.0140 -8.0535 -6.1025 18 8 -1.0788 -8.7166 -6.4983 19 6 -3.3807 -8.2404 -6.7094 20 1 -3.9887 -7.3387 -6.7836 21 6 -3.5208 -9.2788 -7.8243 22 1 -2.6343 -9.7811 -8.2115 23 6 -4.7625 -9.1990 -8.7398 24 8 -5.8489 -8.8418 -7.8579 25 6 -5.6319 -9.6118 -6.6554 26 6 -4.1050 -9.5573 -6.4232 27 1 -3.6617 -10.2823 -5.7404 28 6 0.4403 -3.3534 -2.3700 29 6 0.2048 -2.3424 -1.2428 30 1 -0.4850 0.8400 -0.0004 31 1 1.0920 -4.0629 0.8612 32 1 2.7849 -3.5375 0.6809 33 1 2.2366 -5.6174 -0.6432 34 1 2.8140 -4.2692 -1.6525 35 1 1.1518 -6.6395 -2.3880 36 1 1.5215 -5.3937 -3.6044 37 1 -0.9017 -4.9507 -3.8875 38 1 -1.2715 -6.1965 -2.6711 39 1 -0.1692 -7.9069 -4.0888 40 1 0.2004 -6.6605 -5.3046 41 1 -2.5789 -6.6189 -4.8033 42 1 -4.6239 -8.4317 -9.5013 43 1 -4.9538 -10.1662 -9.2049 44 1 -6.1610 -9.1614 -5.8157 45 1 -5.9581 -10.6416 -6.8002 46 1 1.2736 -3.0203 -2.9890 47 1 -0.4586 -3.4324 -2.9815 48 1 -0.6905 -2.6177 -0.6852 49 1 0.0843 -1.3447 -1.6649 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752353431.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:07 Heat of formation + Delta-G solvation = -17.754502 kcal Electronic energy + Delta-G solvation = -26822.286798 eV Core-core repulsion = 22979.122406 eV Total energy + Delta-G solvation = -3843.164392 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.18467 -39.38824 -38.27057 -35.92207 -34.75788 -34.38186 -32.08311 -30.55053 -29.93627 -29.21509 -27.55007 -26.42295 -24.52842 -23.03037 -22.56391 -21.93883 -21.19777 -21.12002 -20.00073 -19.10490 -18.06679 -16.86181 -16.47082 -16.32132 -15.98325 -15.84313 -15.56765 -15.04944 -14.79137 -14.45906 -14.15817 -14.05440 -13.70834 -13.53971 -13.42994 -13.08666 -13.03641 -12.94701 -12.24735 -12.19855 -12.05764 -11.84888 -11.59443 -11.33120 -11.06617 -10.92215 -10.81042 -10.74549 -10.69155 -10.41027 -10.31310 -10.28239 -10.05603 -10.01363 -9.74520 -9.58724 -9.32514 -8.51904 -7.84196 -6.67310 -5.78957 -3.19872 2.07727 2.69046 3.14162 3.36286 3.44245 3.46288 3.46478 4.09856 4.11540 4.28356 4.29808 4.36812 4.49695 4.68353 4.85722 4.89449 4.91309 5.04584 5.11158 5.16440 5.19311 5.25371 5.37788 5.38949 5.43222 5.46886 5.56331 5.59587 5.69715 5.88216 5.93427 6.02916 6.12206 6.15108 6.20788 6.22204 6.24177 6.34308 6.53980 6.68630 6.92543 7.20412 7.24406 7.59278 7.63310 7.70019 7.81545 7.91896 8.42786 9.20727 9.84158 10.42569 11.29893 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023577 B = 0.001849 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.320508 B =15142.816009 C =15769.773225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.149 3.851 11 C 0.045 3.955 12 N -0.533 5.533 13 C 0.059 3.941 14 C -0.128 4.128 15 C 0.121 3.879 16 N -0.721 5.721 17 C 0.544 3.456 18 O -0.541 6.541 19 C -0.147 4.147 20 H 0.128 0.872 21 C -0.166 4.166 22 H 0.137 0.863 23 C 0.070 3.930 24 O -0.373 6.373 25 C 0.072 3.928 26 C -0.173 4.173 27 H 0.130 0.870 28 C 0.032 3.968 29 C 0.178 3.822 30 H 0.253 0.747 31 H 0.025 0.975 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.404 0.596 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.024 0.976 47 H 0.062 0.938 48 H 0.026 0.974 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.258 -19.670 -14.250 25.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.085 4.085 12 N -0.258 5.258 13 C -0.070 4.070 14 C -0.166 4.166 15 C -0.003 4.003 16 N -0.372 5.372 17 C 0.330 3.670 18 O -0.418 6.418 19 C -0.168 4.168 20 H 0.146 0.854 21 C -0.185 4.185 22 H 0.155 0.845 23 C -0.006 4.006 24 O -0.292 6.292 25 C -0.005 4.005 26 C -0.192 4.192 27 H 0.147 0.853 28 C -0.097 4.097 29 C 0.052 3.948 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.239 0.761 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.093 0.907 46 H 0.042 0.958 47 H 0.080 0.920 48 H 0.044 0.956 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.210 -19.954 -14.223 26.178 hybrid contribution 0.965 1.228 -0.312 1.593 sum -8.245 -18.726 -14.536 25.098 Atomic orbital electron populations 1.70038 1.05194 1.25336 1.54264 1.25024 0.95327 0.98359 1.01132 0.86229 0.79322 0.83991 0.77275 1.20324 1.21587 1.21715 1.19241 0.92610 0.84787 1.41361 0.91608 1.44130 1.34158 1.01263 1.52359 1.20972 0.97772 0.86483 0.92594 1.22612 0.89545 0.99404 0.96903 1.61951 1.34404 1.05839 1.23602 1.21935 0.95059 0.96322 0.93726 1.21801 0.99164 0.98323 0.97334 1.21381 0.83595 0.99465 0.95863 1.45933 1.12578 1.40743 1.37967 1.19450 0.88811 0.79473 0.79253 1.90708 1.43001 1.46597 1.61512 1.22087 0.95838 0.96074 1.02803 0.85447 1.24002 1.01010 1.02764 0.90714 0.84539 1.23014 0.83269 1.01615 0.92732 1.89190 1.47430 1.65503 1.27057 1.22996 0.92296 0.96870 0.88317 1.24021 0.95561 0.98577 1.01005 0.85253 1.22958 0.98677 0.89408 0.98614 1.20862 0.88943 0.96576 0.88434 0.93689 0.95689 0.92635 0.92033 0.95442 0.91197 0.95323 0.90924 0.90302 0.91366 0.91476 0.76107 0.88314 0.90666 0.88225 0.90679 0.95768 0.91981 0.95616 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 11.15 55.49 0.62 -25.57 16 2 C 0.00 0.00 4.93 -17.43 -0.09 -0.09 16 3 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.25 -6.91 9.63 -15.06 -0.15 -7.05 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 9 N -0.60 -15.11 3.04 -172.01 -0.52 -15.63 16 10 C 0.15 3.16 6.69 -3.60 -0.02 3.13 16 11 C 0.04 0.80 5.62 -3.70 -0.02 0.78 16 12 N -0.53 -9.19 4.63 -234.32 -1.08 -10.27 16 13 C 0.06 0.78 4.96 -3.83 -0.02 0.76 16 14 C -0.13 -1.41 5.26 -26.73 -0.14 -1.55 16 15 C 0.12 1.25 5.68 -4.04 -0.02 1.23 16 16 N -0.72 -6.72 5.56 -60.29 -0.33 -7.05 16 17 C 0.54 5.85 7.61 -10.98 -0.08 5.77 16 18 O -0.54 -7.79 16.34 5.56 0.09 -7.70 16 19 C -0.15 -1.20 5.56 -91.77 -0.51 -1.71 16 20 H 0.13 0.93 8.06 -51.93 -0.42 0.52 16 21 C -0.17 -1.26 6.68 -89.14 -0.60 -1.85 16 22 H 0.14 1.13 7.82 -51.93 -0.41 0.72 16 23 C 0.07 0.45 7.53 37.93 0.29 0.73 16 24 O -0.37 -3.03 11.31 -35.23 -0.40 -3.43 16 25 C 0.07 0.43 7.54 37.97 0.29 0.71 16 26 C -0.17 -1.20 6.94 -89.11 -0.62 -1.82 16 27 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 28 C 0.03 0.62 5.46 -3.70 -0.02 0.60 16 29 C 0.18 4.26 5.42 -3.60 -0.02 4.24 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 33 H 0.06 0.94 7.99 -51.93 -0.41 0.52 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.86 7.97 -51.93 -0.41 0.44 16 36 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 37 H 0.07 0.83 6.40 -51.93 -0.33 0.50 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.40 2.88 8.47 -40.82 -0.35 2.53 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 47 H 0.06 1.05 6.16 -51.93 -0.32 0.73 16 48 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.09 2.33 6.12 -51.93 -0.32 2.01 16 LS Contribution 387.42 15.07 5.84 5.84 Total: -1.00 -32.76 387.42 -10.98 -43.74 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.43 Total: -0.45 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.73 Total: 3.87 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -1.32 Total: -58.52 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.31 Total: -11.13 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.76 -10.98 -43.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752353431.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.986 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds