Wall clock time and date at job start Fri Apr 10 2020 18:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99561 * 2 1 4 4 H 1.48504 * 109.46934 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47208 * 299.99789 * 3 2 1 6 6 H 1.48501 * 109.47595 * 60.00118 * 3 2 1 7 7 C 1.38807 * 120.00396 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00211 * 197.02952 * 7 2 1 9 9 N 1.36941 * 119.99553 * 17.03314 * 7 2 1 10 10 C 1.47078 * 120.87957 * 206.58258 * 9 7 2 11 11 C 1.53240 * 108.51952 * 231.16479 * 10 9 7 12 12 N 1.46902 * 109.33557 * 306.16420 * 11 10 9 13 13 C 1.46902 * 110.99890 * 187.25799 * 12 11 10 14 14 C 1.52996 * 109.47179 * 170.00550 * 13 12 11 15 15 C 1.53002 * 109.47053 * 179.97438 * 14 13 12 16 16 N 1.46510 * 109.46941 * 179.97438 * 15 14 13 17 17 C 1.34775 * 119.99637 * 179.97438 * 16 15 14 18 18 O 1.21281 * 120.00325 * 0.02562 * 17 16 15 19 19 C 1.50703 * 119.99586 * 180.02562 * 17 16 15 20 20 H 1.08998 * 115.51214 * 34.41888 * 19 17 16 21 21 C 1.53004 * 117.43129 * 179.78867 * 19 17 16 22 22 H 1.08998 * 119.80781 * 354.34807 * 21 19 17 23 23 C 1.54475 * 118.06435 * 198.08709 * 21 19 17 24 24 O 1.44426 * 104.80333 * 321.12513 * 23 21 19 25 25 C 1.44427 * 105.27894 * 319.49100 * 24 23 21 26 26 C 1.52998 * 117.43271 * 249.04738 * 19 17 16 27 27 H 1.09004 * 119.80979 * 4.62983 * 26 19 17 28 28 C 1.46893 * 111.27041 * 63.10873 * 12 11 10 29 29 C 1.47077 * 120.88275 * 26.55493 * 9 7 2 30 30 H 0.96999 * 120.00226 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.63244 * 111.45106 * 10 9 7 32 32 H 1.09007 * 109.78630 * 350.96164 * 10 9 7 33 33 H 1.08998 * 109.49470 * 186.21037 * 11 10 9 34 34 H 1.08994 * 109.49653 * 66.12839 * 11 10 9 35 35 H 1.09000 * 109.47474 * 49.99509 * 13 12 11 36 36 H 1.09001 * 109.46867 * 289.99917 * 13 12 11 37 37 H 1.09000 * 109.47598 * 59.99666 * 14 13 12 38 38 H 1.09001 * 109.46704 * 299.99467 * 14 13 12 39 39 H 1.09001 * 109.47445 * 59.99869 * 15 14 13 40 40 H 1.08992 * 109.46908 * 299.99329 * 15 14 13 41 41 H 0.97001 * 119.99681 * 0.02562 * 16 15 14 42 42 H 1.08991 * 110.37704 * 79.96273 * 23 21 19 43 43 H 1.09006 * 110.37095 * 202.30381 * 23 21 19 44 44 H 1.08993 * 110.37417 * 159.33857 * 25 24 23 45 45 H 1.08990 * 110.37208 * 281.57069 * 25 24 23 46 46 H 1.09008 * 109.49257 * 56.84824 * 28 12 11 47 47 H 1.09001 * 109.49972 * 176.93213 * 28 12 11 48 48 H 1.09005 * 109.62626 * 248.54834 * 29 9 7 49 49 H 1.08996 * 109.63149 * 9.12803 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0548 -1.2224 0.2744 9 7 1.3706 -2.3621 -0.3464 10 6 1.8309 -3.6608 0.1681 11 6 2.0026 -4.6198 -1.0147 12 7 0.7550 -4.6653 -1.7890 13 6 0.8187 -5.7003 -2.8296 14 6 -0.5687 -5.8900 -3.4458 15 6 -0.5023 -6.9675 -4.5300 16 7 -1.8310 -7.1496 -5.1197 17 6 -2.0140 -8.0535 -6.1025 18 8 -1.0788 -8.7166 -6.4983 19 6 -3.3807 -8.2404 -6.7094 20 1 -3.9887 -7.3387 -6.7836 21 6 -3.5208 -9.2788 -7.8243 22 1 -2.6343 -9.7811 -8.2115 23 6 -4.7625 -9.1990 -8.7398 24 8 -5.8489 -8.8418 -7.8579 25 6 -5.6319 -9.6118 -6.6554 26 6 -4.1050 -9.5573 -6.4232 27 1 -3.6617 -10.2823 -5.7404 28 6 0.4403 -3.3534 -2.3700 29 6 0.2048 -2.3424 -1.2428 30 1 -0.4850 0.8400 -0.0004 31 1 1.0920 -4.0629 0.8612 32 1 2.7849 -3.5375 0.6809 33 1 2.2366 -5.6174 -0.6432 34 1 2.8140 -4.2692 -1.6525 35 1 1.1518 -6.6395 -2.3880 36 1 1.5215 -5.3937 -3.6044 37 1 -0.9017 -4.9507 -3.8875 38 1 -1.2715 -6.1965 -2.6711 39 1 -0.1692 -7.9069 -4.0888 40 1 0.2004 -6.6605 -5.3046 41 1 -2.5789 -6.6189 -4.8033 42 1 -4.6239 -8.4317 -9.5013 43 1 -4.9538 -10.1662 -9.2049 44 1 -6.1610 -9.1614 -5.8157 45 1 -5.9581 -10.6416 -6.8002 46 1 1.2736 -3.0203 -2.9890 47 1 -0.4586 -3.4324 -2.9815 48 1 -0.6905 -2.6177 -0.6852 49 1 0.0843 -1.3447 -1.6649 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752353431.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:06 Heat of formation + Delta-G solvation = -41.033860 kcal Electronic energy + Delta-G solvation = -26823.296266 eV Core-core repulsion = 22979.122406 eV Total energy + Delta-G solvation = -3844.173861 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80774 -40.19435 -39.72109 -37.09919 -35.86353 -35.36638 -33.66528 -32.00272 -31.63652 -29.68027 -28.78497 -27.52559 -25.83197 -24.52779 -24.13122 -22.76401 -22.23831 -21.69834 -20.85044 -20.74713 -18.76667 -18.73034 -17.33750 -17.03125 -16.92111 -16.81397 -16.46608 -16.18326 -16.00074 -15.80044 -15.38887 -15.27380 -15.22802 -15.02431 -14.65275 -14.47900 -14.17140 -13.53029 -13.39747 -13.34970 -12.96042 -12.84019 -12.78605 -12.65232 -12.57857 -12.55541 -12.29744 -12.06698 -11.96371 -11.78136 -11.49464 -11.42479 -11.34304 -11.24509 -11.03503 -10.61420 -10.59761 -10.16933 -9.26817 -8.68454 -7.88515 -5.32846 1.30844 1.45076 1.46777 1.57372 1.95492 2.49860 2.52264 2.91129 3.03544 3.26823 3.53472 3.56893 3.68316 3.69421 3.85001 3.93499 4.00448 4.10540 4.17088 4.30633 4.35070 4.38468 4.46988 4.50659 4.61235 4.63540 4.66119 4.68260 4.69607 4.76941 4.79717 4.82870 4.86092 4.88864 4.97622 5.03248 5.14333 5.20135 5.24722 5.37475 5.39360 5.60766 5.68736 5.73700 6.18416 6.28429 6.37261 6.45842 7.12953 7.13117 7.83701 8.37500 9.18341 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023577 B = 0.001849 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.320508 B =15142.816009 C =15769.773225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.263 4.263 8 H 0.066 0.934 9 N -0.616 5.616 10 C 0.143 3.857 11 C 0.055 3.945 12 N -0.540 5.540 13 C 0.060 3.940 14 C -0.115 4.115 15 C 0.129 3.871 16 N -0.713 5.713 17 C 0.543 3.457 18 O -0.582 6.582 19 C -0.153 4.153 20 H 0.137 0.863 21 C -0.172 4.172 22 H 0.126 0.874 23 C 0.072 3.928 24 O -0.393 6.393 25 C 0.072 3.928 26 C -0.162 4.162 27 H 0.131 0.869 28 C 0.049 3.951 29 C 0.185 3.815 30 H 0.250 0.750 31 H 0.017 0.983 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.021 0.979 35 H 0.088 0.912 36 H 0.030 0.970 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.416 0.584 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.110 0.890 45 H 0.092 0.908 46 H 0.015 0.985 47 H 0.086 0.914 48 H 0.000 1.000 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.484 -20.989 -14.961 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.248 4.248 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.219 1.219 7 C -0.393 4.393 8 H 0.084 0.916 9 N -0.340 5.340 10 C 0.017 3.983 11 C -0.075 4.075 12 N -0.265 5.265 13 C -0.069 4.069 14 C -0.153 4.153 15 C 0.005 3.995 16 N -0.364 5.364 17 C 0.330 3.670 18 O -0.463 6.463 19 C -0.174 4.174 20 H 0.155 0.845 21 C -0.191 4.191 22 H 0.144 0.856 23 C -0.004 4.004 24 O -0.312 6.312 25 C -0.004 4.004 26 C -0.181 4.181 27 H 0.149 0.851 28 C -0.080 4.080 29 C 0.059 3.941 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.040 0.960 35 H 0.106 0.894 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.253 0.747 42 H 0.122 0.878 43 H 0.110 0.890 44 H 0.128 0.872 45 H 0.110 0.890 46 H 0.033 0.967 47 H 0.104 0.896 48 H 0.018 0.982 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.441 -21.290 -14.925 27.661 hybrid contribution 1.037 1.573 -0.040 1.884 sum -8.405 -19.717 -14.965 26.141 Atomic orbital electron populations 1.70188 1.06577 1.25796 1.55535 1.25790 0.96129 1.01458 1.01405 0.85202 0.78525 0.79832 0.76844 1.19244 1.21560 1.21850 1.19559 0.92878 0.86038 1.40848 0.91589 1.44425 1.34304 1.02155 1.53091 1.21133 0.97449 0.85556 0.94128 1.22464 0.89570 0.99990 0.95437 1.61897 1.34229 1.05452 1.24945 1.22018 0.96480 0.95522 0.92837 1.21645 0.97899 0.98372 0.97366 1.21212 0.83948 0.99053 0.95327 1.45868 1.12677 1.40411 1.37424 1.19856 0.89313 0.78861 0.78962 1.90687 1.44470 1.48238 1.62884 1.22038 0.94687 0.97119 1.03583 0.84500 1.24030 1.01242 1.02403 0.91433 0.85601 1.23108 0.82167 1.02746 0.92365 1.89170 1.47936 1.66213 1.27919 1.23152 0.91410 0.97792 0.88060 1.24093 0.96292 0.97341 1.00390 0.85090 1.22628 0.99472 0.89351 0.96522 1.20636 0.87814 0.96394 0.89296 0.94040 0.96497 0.92249 0.88631 0.96037 0.89373 0.95207 0.91165 0.89894 0.91462 0.92351 0.74688 0.87762 0.89010 0.87155 0.88971 0.96710 0.89564 0.98203 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.57 11.15 21.65 0.24 -55.33 16 2 C -0.05 -2.96 4.93 84.86 0.42 -2.54 16 3 Si 0.97 45.11 29.59 68.60 2.03 47.14 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.26 -14.69 9.63 84.03 0.81 -13.88 16 8 H 0.07 3.60 7.88 -2.91 -0.02 3.57 16 9 N -0.62 -31.61 3.04 -698.13 -2.12 -33.73 16 10 C 0.14 6.02 6.69 86.35 0.58 6.60 16 11 C 0.05 1.84 5.62 86.38 0.49 2.32 16 12 N -0.54 -17.60 4.63 -895.26 -4.14 -21.75 16 13 C 0.06 1.43 4.96 86.30 0.43 1.86 16 14 C -0.11 -2.26 5.26 30.59 0.16 -2.10 16 15 C 0.13 2.44 5.68 86.38 0.49 2.93 16 16 N -0.71 -12.17 5.56 -463.04 -2.57 -14.75 16 17 C 0.54 11.18 7.61 87.66 0.67 11.84 16 18 O -0.58 -16.63 16.34 -3.03 -0.05 -16.68 16 19 C -0.15 -2.33 5.56 -11.54 -0.06 -2.39 16 20 H 0.14 1.80 8.06 -2.39 -0.02 1.78 16 21 C -0.17 -2.43 6.68 -9.84 -0.07 -2.50 16 22 H 0.13 2.06 7.82 -2.39 -0.02 2.04 16 23 C 0.07 0.80 7.53 72.48 0.55 1.35 16 24 O -0.39 -5.65 11.31 -148.98 -1.69 -7.33 16 25 C 0.07 0.70 7.54 72.51 0.55 1.25 16 26 C -0.16 -1.99 6.94 -9.82 -0.07 -2.06 16 27 H 0.13 1.57 8.14 -2.38 -0.02 1.55 16 28 C 0.05 1.85 5.46 86.39 0.47 2.33 16 29 C 0.18 9.03 5.42 86.35 0.47 9.50 16 30 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 2.40 7.96 -2.38 -0.02 2.38 16 33 H 0.10 2.59 7.99 -2.39 -0.02 2.57 16 34 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 1.85 7.97 -2.39 -0.02 1.83 16 36 H 0.03 0.73 8.12 -2.39 -0.02 0.71 16 37 H 0.07 1.44 6.40 -2.39 -0.02 1.43 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.42 5.12 8.47 -92.71 -0.79 4.33 16 42 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 43 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 47 H 0.09 2.79 6.16 -2.39 -0.01 2.77 16 48 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 49 H 0.06 3.05 6.12 -2.39 -0.01 3.04 16 Total: -1.00 -71.62 387.42 -2.28 -73.90 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.15 Total: 14.03 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 5.87 Total: 14.49 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -8.60 Total: -125.54 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -1.73 Total: -24.01 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -71.62 -2.28 -73.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752353431.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.862 kcal (2) G-P(sol) polarization free energy of solvation -71.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds