Wall clock time and date at job start Fri Apr 10 2020 18:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99744 * 2 1 4 4 H 1.48506 * 109.47066 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47046 * 299.99145 * 3 2 1 6 6 H 1.48499 * 109.47187 * 59.99892 * 3 2 1 7 7 C 1.38811 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00249 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99875 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00189 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47333 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.52762 * 55.07514 * 11 10 9 13 13 C 1.53047 * 109.49359 * 294.99627 * 11 10 9 14 14 C 1.53037 * 109.53648 * 178.68426 * 13 11 10 15 15 C 1.53192 * 109.31288 * 61.36283 * 14 13 11 16 16 N 1.46923 * 108.77816 * 305.36281 * 15 14 13 17 17 C 1.34770 * 120.63425 * 233.58516 * 16 15 14 18 18 O 1.21285 * 120.00384 * 184.57744 * 17 16 15 19 19 C 1.50703 * 120.00083 * 4.58165 * 17 16 15 20 20 H 1.09003 * 108.56044 * 326.63113 * 19 17 16 21 21 C 1.51778 * 108.61594 * 208.83048 * 19 17 16 22 22 C 1.53574 * 110.81114 * 171.79302 * 21 19 17 23 23 N 1.47195 * 108.36874 * 86.59615 * 22 21 19 24 24 C 1.33367 * 120.42626 * 287.82468 * 23 22 21 25 25 O 1.21282 * 119.89196 * 180.55890 * 24 23 22 26 26 C 1.51424 * 120.21987 * 0.53455 * 24 23 22 27 27 C 1.51789 * 108.61488 * 84.56535 * 19 17 16 28 28 C 1.46931 * 118.73431 * 53.86116 * 16 15 14 29 29 H 0.96998 * 119.99972 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00141 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47584 * 59.99511 * 10 9 7 32 32 H 1.09005 * 109.46738 * 299.99305 * 10 9 7 33 33 H 1.08996 * 109.45908 * 58.66334 * 13 11 10 34 34 H 1.09004 * 109.44608 * 298.69574 * 13 11 10 35 35 H 1.09001 * 109.49583 * 301.41343 * 14 13 11 36 36 H 1.08994 * 109.52362 * 181.33408 * 14 13 11 37 37 H 1.09002 * 109.58652 * 185.57519 * 15 14 13 38 38 H 1.09002 * 109.70294 * 65.22689 * 15 14 13 39 39 H 1.08998 * 109.19267 * 292.23646 * 21 19 17 40 40 H 1.09002 * 109.19876 * 51.55926 * 21 19 17 41 41 H 1.09001 * 109.71051 * 326.96204 * 22 21 19 42 42 H 1.08995 * 109.80171 * 206.28719 * 22 21 19 43 43 H 0.96998 * 119.78290 * 108.09158 * 23 22 21 44 44 H 1.08995 * 109.63348 * 190.96001 * 26 24 23 45 45 H 1.09000 * 109.63132 * 311.35030 * 26 24 23 46 46 H 1.08998 * 109.22693 * 67.60470 * 27 19 17 47 47 H 1.08999 * 109.18862 * 308.23190 * 27 19 17 48 48 H 1.09002 * 109.58618 * 65.92651 * 28 16 15 49 49 H 1.09003 * 109.58462 * 186.35007 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0640 -4.8197 0.0008 12 1 0.3812 -4.7147 -0.8423 13 6 0.2672 -4.8115 1.3075 14 6 -0.7502 -5.9546 1.2937 15 6 -0.0092 -7.2912 1.1876 16 7 0.8705 -7.2522 0.0115 17 6 0.8030 -8.2153 -0.9288 18 8 1.5897 -8.2180 -1.8519 19 6 -0.2501 -9.2891 -0.8333 20 1 -0.4349 -9.5012 0.2198 21 6 0.2813 -10.5488 -1.4924 22 6 -0.6647 -11.7336 -1.2472 23 7 -1.6983 -11.7264 -2.2951 24 6 -2.6589 -10.8013 -2.2900 25 8 -3.5116 -10.8106 -3.1524 26 6 -2.6887 -9.7395 -1.2108 27 6 -1.5326 -8.7666 -1.4547 28 6 1.8294 -6.1464 -0.1171 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6842 -3.7141 0.8921 32 1 2.6854 -3.7149 -0.8879 33 1 -0.2562 -3.8607 1.4076 34 1 0.9482 -4.9416 2.1486 35 1 -1.4159 -5.8388 0.4384 36 1 -1.3336 -5.9341 2.2141 37 1 -0.7303 -8.1011 1.0778 38 1 0.5877 -7.4527 2.0852 39 1 0.3759 -10.3795 -2.5650 40 1 1.2621 -10.7834 -1.0788 41 1 -1.1349 -11.6322 -0.2691 42 1 -0.1053 -12.6680 -1.2916 43 1 -1.6829 -12.4013 -2.9917 44 1 -3.6355 -9.2012 -1.2528 45 1 -2.5770 -10.2080 -0.2330 46 1 -1.3874 -8.6437 -2.5279 47 1 -1.7771 -7.8006 -1.0128 48 1 2.5735 -6.2139 0.6766 49 1 2.3218 -6.2008 -1.0880 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752804391.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:20 Heat of formation + Delta-G solvation = -75.072619 kcal Electronic energy + Delta-G solvation = -28326.000052 eV Core-core repulsion = 24480.350160 eV Total energy + Delta-G solvation = -3845.649892 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.07625 -39.93178 -37.91666 -36.64599 -35.07368 -34.28784 -32.71944 -31.75586 -31.49312 -29.99505 -27.73019 -25.61526 -25.22206 -24.53176 -22.97481 -22.10408 -21.45194 -20.17339 -19.92502 -18.89944 -17.84164 -17.60085 -17.09985 -16.68407 -16.07465 -15.47162 -15.07886 -14.82744 -14.51396 -14.35338 -14.28305 -14.19917 -13.98169 -13.78282 -13.43468 -13.18215 -13.04888 -12.77167 -12.63741 -12.57491 -12.16602 -12.06681 -11.94270 -11.90879 -11.30060 -11.19862 -11.01190 -10.89037 -10.84900 -10.65644 -10.37507 -10.21068 -10.12420 -10.00311 -9.78450 -9.66758 -9.47549 -8.88653 -8.64604 -6.92139 -5.77234 -3.05536 2.30182 2.50724 2.85476 2.93182 3.43169 3.49021 3.51108 4.02567 4.07765 4.22996 4.33759 4.56376 4.58888 4.69722 4.75040 4.85042 4.90667 4.94331 4.97206 5.02915 5.09336 5.16459 5.27075 5.30671 5.43187 5.47598 5.52903 5.56522 5.58137 5.72772 5.80306 5.83331 5.85814 5.95489 6.04967 6.15599 6.19088 6.42379 6.43275 6.48974 6.63841 6.77803 6.87515 6.87597 7.32041 7.70526 7.90157 8.06405 8.41870 9.53199 10.10815 10.45521 11.45815 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023287 B = 0.002450 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.099052 B =11427.714533 C =11766.338954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.160 3.840 11 C -0.106 4.106 12 H 0.073 0.927 13 C -0.112 4.112 14 C -0.136 4.136 15 C 0.103 3.897 16 N -0.607 5.607 17 C 0.516 3.484 18 O -0.540 6.540 19 C -0.107 4.107 20 H 0.094 0.906 21 C -0.127 4.127 22 C 0.110 3.890 23 N -0.725 5.725 24 C 0.518 3.482 25 O -0.551 6.551 26 C -0.135 4.135 27 C -0.106 4.106 28 C 0.118 3.882 29 H 0.254 0.746 30 H 0.384 0.616 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.400 0.600 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.068 0.932 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.831 -26.742 4.346 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.031 3.969 11 C -0.126 4.126 12 H 0.092 0.908 13 C -0.149 4.149 14 C -0.174 4.174 15 C -0.020 4.020 16 N -0.340 5.340 17 C 0.303 3.697 18 O -0.417 6.417 19 C -0.128 4.128 20 H 0.112 0.888 21 C -0.165 4.165 22 C -0.015 4.015 23 N -0.378 5.378 24 C 0.304 3.696 25 O -0.429 6.429 26 C -0.176 4.176 27 C -0.144 4.144 28 C -0.004 4.004 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.236 0.764 44 H 0.122 0.878 45 H 0.110 0.890 46 H 0.095 0.905 47 H 0.104 0.896 48 H 0.086 0.914 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.706 -26.465 3.566 26.841 hybrid contribution 0.251 0.829 -0.087 0.870 sum -2.455 -25.636 3.479 25.987 Atomic orbital electron populations 1.69664 1.05099 1.25523 1.57993 1.24735 0.95534 0.97688 1.03107 0.86119 0.78798 0.84125 0.77172 1.20565 1.21873 1.21891 1.19278 0.91078 0.84144 1.42371 0.91147 1.42351 1.05835 0.99872 1.89458 1.20585 0.93036 0.85301 0.97933 1.21750 0.98283 0.93964 0.98570 0.90817 1.21532 0.97502 0.98734 0.97163 1.21956 0.98493 0.94416 1.02519 1.21878 0.93250 0.98870 0.87957 1.48157 1.38351 1.24978 1.22467 1.20561 0.84972 0.82420 0.81706 1.90706 1.42315 1.75226 1.33438 1.21064 0.94737 0.94727 1.02307 0.88786 1.21801 0.99011 0.92482 1.03239 1.21918 0.89079 0.99274 0.91206 1.45983 1.28784 1.32277 1.30727 1.20599 0.80327 0.82097 0.86542 1.90772 1.38510 1.74206 1.39421 1.21978 1.01436 0.96018 0.98130 1.21176 0.91410 0.98936 1.02848 1.21750 0.90716 0.84628 1.03305 0.93583 0.78230 0.96190 0.96227 0.90198 0.92060 0.91473 0.90753 0.89893 0.91197 0.89786 0.89970 0.90324 0.88971 0.76355 0.87824 0.88989 0.90490 0.89576 0.91408 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.29 5.32 -59.91 -0.32 -18.60 16 10 C 0.16 3.15 5.65 -4.04 -0.02 3.13 16 11 C -0.11 -1.65 2.39 -90.27 -0.22 -1.87 16 12 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 13 C -0.11 -1.55 5.05 -26.69 -0.13 -1.68 16 14 C -0.14 -1.36 6.08 -26.61 -0.16 -1.52 16 15 C 0.10 0.84 6.11 -3.71 -0.02 0.82 16 16 N -0.61 -6.77 2.97 -172.50 -0.51 -7.29 16 17 C 0.52 6.01 6.62 -10.99 -0.07 5.94 16 18 O -0.54 -8.52 15.65 5.55 0.09 -8.43 16 19 C -0.11 -0.79 1.31 -93.00 -0.12 -0.91 16 20 H 0.09 0.44 5.86 -51.93 -0.30 0.14 16 21 C -0.13 -0.84 4.45 -27.05 -0.12 -0.96 16 22 C 0.11 0.43 6.50 -3.36 -0.02 0.41 16 23 N -0.73 -4.72 5.26 -59.60 -0.31 -5.04 16 24 C 0.52 4.92 7.06 -11.26 -0.08 4.84 16 25 O -0.55 -7.86 17.92 5.56 0.10 -7.76 16 26 C -0.14 -0.92 5.56 -27.50 -0.15 -1.07 16 27 C -0.11 -0.84 4.72 -27.31 -0.13 -0.97 16 28 C 0.12 1.60 5.73 -3.49 -0.02 1.58 16 29 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.38 10.03 6.85 -40.82 -0.28 9.75 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 1.35 7.15 -51.93 -0.37 0.98 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.45 5.21 -51.93 -0.27 0.18 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 40 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 41 H 0.08 0.20 6.71 -51.93 -0.35 -0.15 16 42 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.40 2.33 8.91 -40.82 -0.36 1.96 16 44 H 0.10 0.73 8.13 -51.93 -0.42 0.30 16 45 H 0.09 0.37 6.78 -51.93 -0.35 0.01 16 46 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 47 H 0.09 0.68 7.85 -51.93 -0.41 0.27 16 48 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.09 1.39 7.03 -51.93 -0.37 1.03 16 LS Contribution 377.58 15.07 5.69 5.69 Total: -1.00 -36.00 377.58 -9.17 -45.16 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -8.08 Total: 5.83 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.52 Total: 0.42 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.42 Total: -58.35 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.19 Total: -16.20 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.00 -9.17 -45.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752804391.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.911 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds