Wall clock time and date at job start Fri Apr 10 2020 18:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99744 * 2 1 4 4 H 1.48506 * 109.47066 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47046 * 299.99145 * 3 2 1 6 6 H 1.48499 * 109.47187 * 59.99892 * 3 2 1 7 7 C 1.38811 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00249 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99875 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00189 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47333 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.52762 * 55.07514 * 11 10 9 13 13 C 1.53047 * 109.49359 * 294.99627 * 11 10 9 14 14 C 1.53037 * 109.53648 * 178.68426 * 13 11 10 15 15 C 1.53192 * 109.31288 * 61.36283 * 14 13 11 16 16 N 1.46923 * 108.77816 * 305.36281 * 15 14 13 17 17 C 1.34770 * 120.63425 * 233.58516 * 16 15 14 18 18 O 1.21285 * 120.00384 * 184.57744 * 17 16 15 19 19 C 1.50703 * 120.00083 * 4.58165 * 17 16 15 20 20 H 1.09003 * 108.56044 * 326.63113 * 19 17 16 21 21 C 1.51778 * 108.61594 * 208.83048 * 19 17 16 22 22 C 1.53574 * 110.81114 * 171.79302 * 21 19 17 23 23 N 1.47195 * 108.36874 * 86.59615 * 22 21 19 24 24 C 1.33367 * 120.42626 * 287.82468 * 23 22 21 25 25 O 1.21282 * 119.89196 * 180.55890 * 24 23 22 26 26 C 1.51424 * 120.21987 * 0.53455 * 24 23 22 27 27 C 1.51789 * 108.61488 * 84.56535 * 19 17 16 28 28 C 1.46931 * 118.73431 * 53.86116 * 16 15 14 29 29 H 0.96998 * 119.99972 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00141 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47584 * 59.99511 * 10 9 7 32 32 H 1.09005 * 109.46738 * 299.99305 * 10 9 7 33 33 H 1.08996 * 109.45908 * 58.66334 * 13 11 10 34 34 H 1.09004 * 109.44608 * 298.69574 * 13 11 10 35 35 H 1.09001 * 109.49583 * 301.41343 * 14 13 11 36 36 H 1.08994 * 109.52362 * 181.33408 * 14 13 11 37 37 H 1.09002 * 109.58652 * 185.57519 * 15 14 13 38 38 H 1.09002 * 109.70294 * 65.22689 * 15 14 13 39 39 H 1.08998 * 109.19267 * 292.23646 * 21 19 17 40 40 H 1.09002 * 109.19876 * 51.55926 * 21 19 17 41 41 H 1.09001 * 109.71051 * 326.96204 * 22 21 19 42 42 H 1.08995 * 109.80171 * 206.28719 * 22 21 19 43 43 H 0.96998 * 119.78290 * 108.09158 * 23 22 21 44 44 H 1.08995 * 109.63348 * 190.96001 * 26 24 23 45 45 H 1.09000 * 109.63132 * 311.35030 * 26 24 23 46 46 H 1.08998 * 109.22693 * 67.60470 * 27 19 17 47 47 H 1.08999 * 109.18862 * 308.23190 * 27 19 17 48 48 H 1.09002 * 109.58618 * 65.92651 * 28 16 15 49 49 H 1.09003 * 109.58462 * 186.35007 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0640 -4.8197 0.0008 12 1 0.3812 -4.7147 -0.8423 13 6 0.2672 -4.8115 1.3075 14 6 -0.7502 -5.9546 1.2937 15 6 -0.0092 -7.2912 1.1876 16 7 0.8705 -7.2522 0.0115 17 6 0.8030 -8.2153 -0.9288 18 8 1.5897 -8.2180 -1.8519 19 6 -0.2501 -9.2891 -0.8333 20 1 -0.4349 -9.5012 0.2198 21 6 0.2813 -10.5488 -1.4924 22 6 -0.6647 -11.7336 -1.2472 23 7 -1.6983 -11.7264 -2.2951 24 6 -2.6589 -10.8013 -2.2900 25 8 -3.5116 -10.8106 -3.1524 26 6 -2.6887 -9.7395 -1.2108 27 6 -1.5326 -8.7666 -1.4547 28 6 1.8294 -6.1464 -0.1171 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6842 -3.7141 0.8921 32 1 2.6854 -3.7149 -0.8879 33 1 -0.2562 -3.8607 1.4076 34 1 0.9482 -4.9416 2.1486 35 1 -1.4159 -5.8388 0.4384 36 1 -1.3336 -5.9341 2.2141 37 1 -0.7303 -8.1011 1.0778 38 1 0.5877 -7.4527 2.0852 39 1 0.3759 -10.3795 -2.5650 40 1 1.2621 -10.7834 -1.0788 41 1 -1.1349 -11.6322 -0.2691 42 1 -0.1053 -12.6680 -1.2916 43 1 -1.6829 -12.4013 -2.9917 44 1 -3.6355 -9.2012 -1.2528 45 1 -2.5770 -10.2080 -0.2330 46 1 -1.3874 -8.6437 -2.5279 47 1 -1.7771 -7.8006 -1.0128 48 1 2.5735 -6.2139 0.6766 49 1 2.3218 -6.2008 -1.0880 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752804391.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:19 Heat of formation + Delta-G solvation = -101.841553 kcal Electronic energy + Delta-G solvation = -28327.160840 eV Core-core repulsion = 24480.350160 eV Total energy + Delta-G solvation = -3846.810680 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85083 -40.74212 -39.00031 -37.42646 -36.62814 -35.06922 -34.19716 -32.91573 -32.15987 -31.62256 -28.45952 -27.11929 -26.23591 -25.13307 -24.63164 -23.11618 -22.37958 -21.12146 -20.72699 -19.72739 -19.22910 -18.54525 -18.22537 -17.41270 -17.04115 -16.58869 -16.32622 -15.91886 -15.66353 -15.46115 -15.43934 -15.04098 -14.99156 -14.82116 -14.57695 -14.43523 -13.90529 -13.79933 -13.57082 -13.39001 -13.26867 -13.16476 -12.86428 -12.82215 -12.73041 -12.50517 -12.14251 -12.09338 -12.01362 -11.78791 -11.70710 -11.67707 -11.49001 -11.34654 -10.94947 -10.87286 -10.64549 -10.09574 -9.62085 -9.01498 -7.97247 -5.25944 1.45854 1.46882 1.52893 1.56953 1.69229 1.99474 2.42667 2.54628 3.35748 3.36886 3.47637 3.71870 3.75052 3.79957 3.83497 3.94236 4.09045 4.13799 4.20171 4.33089 4.38073 4.40946 4.46431 4.48824 4.52129 4.61775 4.69343 4.71152 4.75131 4.80103 4.87958 4.90222 4.96283 5.00062 5.03016 5.13897 5.22469 5.26902 5.32592 5.42681 5.47017 5.52361 5.55623 5.90827 6.25268 6.30842 6.46123 7.17118 7.26321 7.31704 8.06919 8.30985 9.26495 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023287 B = 0.002450 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.099052 B =11427.714533 C =11766.338954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.074 0.926 9 N -0.742 5.742 10 C 0.157 3.843 11 C -0.093 4.093 12 H 0.049 0.951 13 C -0.108 4.108 14 C -0.130 4.130 15 C 0.102 3.898 16 N -0.606 5.606 17 C 0.509 3.491 18 O -0.591 6.591 19 C -0.097 4.097 20 H 0.140 0.860 21 C -0.125 4.125 22 C 0.113 3.887 23 N -0.717 5.717 24 C 0.508 3.492 25 O -0.612 6.612 26 C -0.125 4.125 27 C -0.100 4.100 28 C 0.127 3.873 29 H 0.252 0.748 30 H 0.375 0.625 31 H 0.029 0.971 32 H 0.009 0.991 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.120 0.880 43 H 0.402 0.598 44 H 0.100 0.900 45 H 0.136 0.864 46 H 0.040 0.960 47 H 0.090 0.910 48 H 0.084 0.916 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.632 -29.049 7.190 30.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.385 5.385 10 C 0.030 3.970 11 C -0.113 4.113 12 H 0.067 0.933 13 C -0.146 4.146 14 C -0.168 4.168 15 C -0.019 4.019 16 N -0.338 5.338 17 C 0.299 3.701 18 O -0.471 6.471 19 C -0.118 4.118 20 H 0.157 0.843 21 C -0.164 4.164 22 C -0.010 4.010 23 N -0.367 5.367 24 C 0.296 3.704 25 O -0.495 6.495 26 C -0.165 4.165 27 C -0.139 4.139 28 C 0.003 3.997 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.047 0.953 32 H 0.027 0.973 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.140 0.860 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.129 0.871 42 H 0.138 0.862 43 H 0.238 0.762 44 H 0.119 0.881 45 H 0.154 0.846 46 H 0.059 0.941 47 H 0.108 0.892 48 H 0.102 0.898 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.458 -28.821 6.456 29.637 hybrid contribution 0.281 1.532 -1.005 1.854 sum -2.177 -27.289 5.451 27.913 Atomic orbital electron populations 1.69817 1.06567 1.26036 1.59525 1.25565 0.96439 1.01078 1.03666 0.85071 0.78195 0.79748 0.76730 1.19139 1.22170 1.21688 1.19666 0.91477 0.85406 1.41176 0.90813 1.42541 1.05629 1.01009 1.89330 1.20735 0.93762 0.84941 0.97513 1.21558 0.97183 0.93599 0.98935 0.93293 1.21463 0.98158 0.98913 0.96030 1.21926 0.97529 0.93751 1.03559 1.22179 0.93651 0.98772 0.87318 1.48264 1.38144 1.23870 1.23487 1.21408 0.85091 0.82987 0.80635 1.90689 1.44504 1.76534 1.35367 1.21145 0.92511 0.93184 1.04971 0.84255 1.21790 1.00233 0.93282 1.01071 1.22172 0.88116 0.99184 0.91552 1.46082 1.28238 1.31248 1.31166 1.21175 0.79985 0.82789 0.86453 1.90743 1.41076 1.75861 1.41775 1.21960 1.00523 0.94884 0.99130 1.21101 0.92327 0.99725 1.00718 1.21452 0.91220 0.84402 1.02579 0.93959 0.79293 0.95323 0.97256 0.93843 0.91109 0.92375 0.88081 0.85954 0.88947 0.93217 0.89368 0.87114 0.86211 0.76200 0.88136 0.84626 0.94123 0.89190 0.89805 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.69 13.06 21.65 0.28 -59.41 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 3 Si 0.97 46.63 29.55 68.60 2.03 48.65 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.25 -13.95 9.99 84.03 0.84 -13.11 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -38.28 5.32 -343.45 -1.83 -40.11 16 10 C 0.16 6.38 5.65 86.38 0.49 6.87 16 11 C -0.09 -2.95 2.39 -10.57 -0.03 -2.98 16 12 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 13 C -0.11 -2.91 5.05 30.62 0.15 -2.76 16 14 C -0.13 -2.23 6.08 30.67 0.19 -2.04 16 15 C 0.10 1.20 6.11 86.36 0.53 1.73 16 16 N -0.61 -12.24 2.97 -818.06 -2.43 -14.67 16 17 C 0.51 11.14 6.62 87.66 0.58 11.72 16 18 O -0.59 -19.01 15.65 -3.04 -0.05 -19.06 16 19 C -0.10 -1.13 1.31 -12.34 -0.02 -1.15 16 20 H 0.14 0.38 5.86 -2.39 -0.01 0.37 16 21 C -0.12 -1.34 4.45 30.39 0.14 -1.21 16 22 C 0.11 0.42 6.50 86.44 0.56 0.98 16 23 N -0.72 -7.91 5.26 -461.63 -2.43 -10.34 16 24 C 0.51 9.09 7.06 88.11 0.62 9.71 16 25 O -0.61 -17.87 17.92 -3.04 -0.05 -17.93 16 26 C -0.13 -1.33 5.56 30.10 0.17 -1.16 16 27 C -0.10 -1.41 4.72 30.22 0.14 -1.26 16 28 C 0.13 3.37 5.73 86.51 0.50 3.87 16 29 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 30 H 0.37 20.43 6.85 -92.71 -0.63 19.80 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.04 1.49 7.15 -2.39 -0.02 1.48 16 34 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 0.52 5.21 -2.39 -0.01 0.51 16 38 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.05 0.90 7.95 -2.39 -0.02 0.88 16 40 H 0.09 0.88 8.09 -2.39 -0.02 0.87 16 41 H 0.11 -0.19 6.71 -2.39 -0.02 -0.21 16 42 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.40 4.21 8.91 -92.71 -0.83 3.38 16 44 H 0.10 1.19 8.13 -2.39 -0.02 1.18 16 45 H 0.14 0.25 6.78 -2.39 -0.02 0.23 16 46 H 0.04 0.87 7.86 -2.39 -0.02 0.85 16 47 H 0.09 1.22 7.85 -2.39 -0.02 1.20 16 48 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.07 2.10 7.03 -2.39 -0.02 2.08 16 Total: -1.00 -84.90 377.58 0.36 -84.54 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -0.50 Total: 23.00 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 5.33 Total: 5.31 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -6.40 Total: -124.53 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.10 Total: -36.98 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -84.90 0.36 -84.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752804391.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.299 kcal (2) G-P(sol) polarization free energy of solvation -84.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds