Wall clock time and date at job start Fri Apr 10 2020 18:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47288 * 2 1 4 4 C 1.52994 * 109.47322 * 120.00418 * 2 1 3 5 5 H 1.09003 * 115.55877 * 325.68838 * 4 2 1 6 6 C 1.53006 * 117.50127 * 111.37164 * 4 2 1 7 7 C 1.52999 * 117.50151 * 179.97438 * 4 2 1 8 8 H 1.09002 * 117.49803 * 359.97438 * 7 4 2 9 9 C 1.50700 * 117.51845 * 145.02652 * 7 4 2 10 10 O 1.21285 * 119.99855 * 359.88751 * 9 7 4 11 11 N 1.34772 * 119.99895 * 179.88026 * 9 7 4 12 12 C 1.46511 * 119.99789 * 180.02562 * 11 9 7 13 13 C 1.52993 * 109.46790 * 180.02562 * 12 11 9 14 14 C 1.53941 * 113.73450 * 273.76327 * 13 12 11 15 15 N 1.48189 * 86.09950 * 221.96255 * 14 13 12 16 16 C 1.46901 * 111.06945 * 137.52263 * 15 14 13 17 17 C 1.50703 * 109.47325 * 70.56471 * 16 15 14 18 18 O 1.21296 * 119.99905 * 359.97438 * 17 16 15 19 19 N 1.34767 * 120.00032 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00035 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99797 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00531 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99224 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00510 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47001 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47128 * 120.00318 * 24 22 20 27 27 H 1.48493 * 109.47178 * 240.00405 * 24 22 20 28 28 C 1.47953 * 90.80169 * 24.59750 * 15 14 13 29 29 H 1.09005 * 109.46944 * 300.00123 * 1 2 3 30 30 H 1.09003 * 109.47249 * 59.99354 * 1 2 3 31 31 H 1.08993 * 109.47453 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46797 * 240.00637 * 2 1 3 33 33 H 1.09001 * 109.46646 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46999 * 299.99967 * 3 2 1 35 35 H 1.08995 * 109.46840 * 60.00360 * 3 2 1 36 36 H 1.09004 * 117.49624 * 0.02562 * 6 4 2 37 37 H 1.08995 * 117.52013 * 214.96929 * 6 4 2 38 38 H 0.96996 * 120.00502 * 0.02562 * 11 9 7 39 39 H 1.09001 * 109.46758 * 300.00308 * 12 11 9 40 40 H 1.08997 * 109.47052 * 60.00226 * 12 11 9 41 41 H 1.09002 * 112.94462 * 45.33150 * 13 12 11 42 42 H 1.08993 * 113.75758 * 336.24267 * 14 13 12 43 43 H 1.08994 * 113.75718 * 107.60480 * 14 13 12 44 44 H 1.08996 * 109.46748 * 190.55980 * 16 15 14 45 45 H 1.08991 * 109.47117 * 310.56544 * 16 15 14 46 46 H 0.96998 * 120.00084 * 359.97438 * 19 17 16 47 47 H 0.97009 * 119.99615 * 179.97438 * 23 22 20 48 48 H 1.09003 * 113.76044 * 221.08095 * 28 15 14 49 49 H 1.08998 * 113.75770 * 89.72534 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.4310 -0.5984 2.1448 6 6 2.7418 -2.0664 1.0512 7 6 3.5550 -0.8287 1.4339 8 1 4.1884 -0.3858 0.6652 9 6 4.0919 -0.7562 2.8401 10 8 3.3302 -0.6155 3.7735 11 7 5.4183 -0.8478 3.0606 12 6 5.9401 -0.7778 4.4279 13 6 7.4644 -0.9058 4.3990 14 6 7.9642 -2.3618 4.4106 15 7 8.9910 -1.8951 5.3718 16 6 9.1623 -2.8561 6.4696 17 6 9.8383 -4.0983 5.9489 18 8 10.1466 -4.1757 4.7784 19 7 10.0993 -5.1236 6.7837 20 6 10.7139 -6.2539 6.3099 21 1 10.9891 -6.3224 5.2679 22 6 10.9835 -7.3109 7.1706 23 7 10.6490 -7.2272 8.4388 24 14 11.8214 -8.8506 6.5253 25 1 12.0929 -8.6949 5.0737 26 1 13.1019 -9.0574 7.2485 27 1 10.9362 -10.0232 6.7408 28 6 8.1239 -0.7691 5.7832 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 2.8405 -2.4373 0.0309 37 1 2.5950 -2.8285 1.8165 38 1 6.0274 -0.9600 2.3142 39 1 5.6644 0.1779 4.8735 40 1 5.5181 -1.5899 5.0198 41 1 7.9281 -0.2889 3.6293 42 1 7.2516 -3.0674 4.8374 43 1 8.3730 -2.6933 3.4561 44 1 9.7762 -2.4089 7.2513 45 1 8.1866 -3.1179 6.8788 46 1 9.8525 -5.0619 7.7197 47 1 10.8369 -7.9653 9.0396 48 1 8.6600 0.1696 5.9235 49 1 7.4580 -1.0078 6.6125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753412144.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:24 Heat of formation + Delta-G solvation = -29.229821 kcal Electronic energy + Delta-G solvation = -26521.108408 eV Core-core repulsion = 22677.446409 eV Total energy + Delta-G solvation = -3843.661999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.48831 -39.85223 -37.95832 -37.59035 -34.87362 -33.89780 -33.66959 -31.37634 -30.79677 -27.76013 -27.49908 -25.98656 -25.22428 -24.13662 -23.21306 -22.32298 -20.69489 -20.10558 -19.45981 -19.18130 -17.90759 -17.46477 -16.49343 -16.20438 -15.66682 -15.40784 -15.17135 -15.15409 -14.70629 -14.58983 -14.23995 -14.07129 -13.64636 -13.50155 -13.36036 -13.10901 -12.80629 -12.73983 -12.54354 -12.51086 -12.11527 -11.74360 -11.67334 -11.52848 -11.49754 -11.33812 -11.09420 -11.05083 -10.67939 -10.60868 -10.57814 -10.41126 -10.35226 -10.23022 -9.95946 -9.52261 -9.24525 -8.66139 -8.23722 -7.97180 -6.42612 -3.83443 2.30816 2.89211 3.15459 3.26002 3.33158 3.51058 3.88076 3.98099 4.16963 4.22110 4.37573 4.39800 4.49155 4.63867 4.66170 4.79955 4.90199 4.94100 4.95588 5.11432 5.21350 5.22349 5.29406 5.33600 5.40177 5.41399 5.47825 5.51785 5.55315 5.58154 5.63364 5.72269 5.73045 5.75719 5.79056 5.83394 5.90541 6.03757 6.06010 6.19517 6.25494 6.33088 6.60987 7.19199 7.31761 7.54421 8.04859 8.05051 8.60384 9.17081 9.53330 10.04884 10.75213 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.019113 B = 0.001917 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.647488 B =14599.838133 C =15446.694241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.067 4.067 3 C -0.147 4.147 4 C -0.112 4.112 5 H 0.117 0.883 6 C -0.148 4.148 7 C -0.190 4.190 8 H 0.123 0.877 9 C 0.542 3.458 10 O -0.543 6.543 11 N -0.723 5.723 12 C 0.128 3.872 13 C -0.134 4.134 14 C 0.027 3.973 15 N -0.454 5.454 16 C 0.010 3.990 17 C 0.444 3.556 18 O -0.580 6.580 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.009 3.991 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.403 0.597 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.091 0.909 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.849 16.043 -12.852 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.204 4.204 4 C -0.131 4.131 5 H 0.135 0.865 6 C -0.185 4.185 7 C -0.211 4.211 8 H 0.141 0.859 9 C 0.328 3.672 10 O -0.421 6.421 11 N -0.374 5.374 12 C 0.005 3.995 13 C -0.153 4.153 14 C -0.102 4.102 15 N -0.176 5.176 16 C -0.122 4.122 17 C 0.229 3.771 18 O -0.464 6.464 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.121 4.121 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.238 0.762 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.109 0.891 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.454 16.053 -12.995 26.407 hybrid contribution 0.024 -1.127 0.565 1.261 sum -16.430 14.925 -12.430 25.440 Atomic orbital electron populations 1.21803 0.94542 1.01984 1.01892 1.20752 0.96067 0.96011 0.95741 1.21827 1.01091 0.95628 1.01843 1.22476 0.91776 0.98520 1.00323 0.86476 1.23101 1.01433 0.90894 1.03094 1.22259 0.96379 1.06656 0.95832 0.85922 1.19676 0.82069 0.75662 0.89772 1.90698 1.57318 1.49329 1.44749 1.45925 1.07274 1.74421 1.09756 1.21438 0.92695 1.02277 0.83133 1.23343 0.93262 0.99244 0.99478 1.23892 0.92842 0.93914 0.99543 1.68431 1.33926 1.05407 1.09858 1.22459 1.00338 0.94279 0.95117 1.19688 0.85451 0.84707 0.87255 1.90515 1.57076 1.81721 1.17077 1.41879 1.52974 1.14280 1.10999 1.19747 1.34193 0.92045 0.96824 0.87887 1.25271 0.97997 0.99625 0.95118 1.69628 1.47714 1.33410 1.03539 0.85795 0.78652 0.80754 0.79117 1.19234 1.20725 1.20771 1.23954 0.94981 0.97700 0.95464 0.92447 0.92563 0.92442 0.90994 0.92650 0.92632 0.92431 0.87722 0.88179 0.76224 0.91207 0.91305 0.87724 0.91490 0.88790 0.89125 0.92817 0.77498 0.91924 0.89095 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.18 37.16 0.34 -0.49 16 2 C -0.07 -0.42 3.07 -90.62 -0.28 -0.70 16 3 C -0.15 -0.89 9.04 37.16 0.34 -0.56 16 4 C -0.11 -0.90 4.66 -90.62 -0.42 -1.32 16 5 H 0.12 1.16 7.64 -51.93 -0.40 0.76 16 6 C -0.15 -1.12 9.88 -26.75 -0.26 -1.38 16 7 C -0.19 -1.56 5.39 -91.79 -0.49 -2.05 16 8 H 0.12 0.76 7.61 -51.93 -0.40 0.37 16 9 C 0.54 6.09 7.61 -10.99 -0.08 6.01 16 10 O -0.54 -8.21 16.26 5.55 0.09 -8.12 16 11 N -0.72 -6.98 5.56 -60.29 -0.33 -7.31 16 12 C 0.13 1.35 5.51 -4.04 -0.02 1.33 16 13 C -0.13 -1.45 3.93 -89.69 -0.35 -1.80 16 14 C 0.03 0.40 6.33 -2.63 -0.02 0.38 16 15 N -0.45 -7.41 5.95 -239.53 -1.42 -8.84 16 16 C 0.01 0.18 5.31 -4.97 -0.03 0.15 16 17 C 0.44 10.57 7.59 -10.99 -0.08 10.49 16 18 O -0.58 -15.74 15.13 5.54 0.08 -15.65 16 19 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 23 N -0.90 -24.67 13.05 55.50 0.72 -23.94 16 24 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.01 0.10 7.54 -2.76 -0.02 0.08 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.40 7.90 -51.92 -0.41 -0.01 16 33 H 0.05 0.33 7.29 -51.93 -0.38 -0.05 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.61 8.05 -51.93 -0.42 0.19 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.40 3.01 8.47 -40.82 -0.35 2.66 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.83 7.88 -51.93 -0.41 0.42 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.03 7.57 -51.93 -0.39 0.64 16 43 H 0.09 1.53 8.09 -51.93 -0.42 1.11 16 44 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 45 H 0.05 0.87 7.70 -51.93 -0.40 0.47 16 46 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 47 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.07 0.77 7.75 -51.93 -0.40 0.36 16 LS Contribution 403.05 15.07 6.07 6.07 Total: -1.00 -33.64 403.05 -9.93 -43.57 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -8.43 Total: 10.51 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.63 Total: 2.10 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -1.09 Total: -54.59 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: 0.17 Total: -23.78 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.64 -9.93 -43.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753412144.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.338 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds