Wall clock time and date at job start Fri Apr 10 2020 18:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47288 * 2 1 4 4 C 1.52994 * 109.47322 * 120.00418 * 2 1 3 5 5 H 1.09003 * 115.55877 * 325.68838 * 4 2 1 6 6 C 1.53006 * 117.50127 * 111.37164 * 4 2 1 7 7 C 1.52999 * 117.50151 * 179.97438 * 4 2 1 8 8 H 1.09002 * 117.49803 * 359.97438 * 7 4 2 9 9 C 1.50700 * 117.51845 * 145.02652 * 7 4 2 10 10 O 1.21285 * 119.99855 * 359.88751 * 9 7 4 11 11 N 1.34772 * 119.99895 * 179.88026 * 9 7 4 12 12 C 1.46511 * 119.99789 * 180.02562 * 11 9 7 13 13 C 1.52993 * 109.46790 * 180.02562 * 12 11 9 14 14 C 1.53941 * 113.73450 * 273.76327 * 13 12 11 15 15 N 1.48189 * 86.09950 * 221.96255 * 14 13 12 16 16 C 1.46901 * 111.06945 * 137.52263 * 15 14 13 17 17 C 1.50703 * 109.47325 * 70.56471 * 16 15 14 18 18 O 1.21296 * 119.99905 * 359.97438 * 17 16 15 19 19 N 1.34767 * 120.00032 * 180.02562 * 17 16 15 20 20 C 1.37100 * 120.00035 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99797 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00531 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99224 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00510 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47001 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47128 * 120.00318 * 24 22 20 27 27 H 1.48493 * 109.47178 * 240.00405 * 24 22 20 28 28 C 1.47953 * 90.80169 * 24.59750 * 15 14 13 29 29 H 1.09005 * 109.46944 * 300.00123 * 1 2 3 30 30 H 1.09003 * 109.47249 * 59.99354 * 1 2 3 31 31 H 1.08993 * 109.47453 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46797 * 240.00637 * 2 1 3 33 33 H 1.09001 * 109.46646 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46999 * 299.99967 * 3 2 1 35 35 H 1.08995 * 109.46840 * 60.00360 * 3 2 1 36 36 H 1.09004 * 117.49624 * 0.02562 * 6 4 2 37 37 H 1.08995 * 117.52013 * 214.96929 * 6 4 2 38 38 H 0.96996 * 120.00502 * 0.02562 * 11 9 7 39 39 H 1.09001 * 109.46758 * 300.00308 * 12 11 9 40 40 H 1.08997 * 109.47052 * 60.00226 * 12 11 9 41 41 H 1.09002 * 112.94462 * 45.33150 * 13 12 11 42 42 H 1.08993 * 113.75758 * 336.24267 * 14 13 12 43 43 H 1.08994 * 113.75718 * 107.60480 * 14 13 12 44 44 H 1.08996 * 109.46748 * 190.55980 * 16 15 14 45 45 H 1.08991 * 109.47117 * 310.56544 * 16 15 14 46 46 H 0.96998 * 120.00084 * 359.97438 * 19 17 16 47 47 H 0.97009 * 119.99615 * 179.97438 * 23 22 20 48 48 H 1.09003 * 113.76044 * 221.08095 * 28 15 14 49 49 H 1.08998 * 113.75770 * 89.72534 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.4310 -0.5984 2.1448 6 6 2.7418 -2.0664 1.0512 7 6 3.5550 -0.8287 1.4339 8 1 4.1884 -0.3858 0.6652 9 6 4.0919 -0.7562 2.8401 10 8 3.3302 -0.6155 3.7735 11 7 5.4183 -0.8478 3.0606 12 6 5.9401 -0.7778 4.4279 13 6 7.4644 -0.9058 4.3990 14 6 7.9642 -2.3618 4.4106 15 7 8.9910 -1.8951 5.3718 16 6 9.1623 -2.8561 6.4696 17 6 9.8383 -4.0983 5.9489 18 8 10.1466 -4.1757 4.7784 19 7 10.0993 -5.1236 6.7837 20 6 10.7139 -6.2539 6.3099 21 1 10.9891 -6.3224 5.2679 22 6 10.9835 -7.3109 7.1706 23 7 10.6490 -7.2272 8.4388 24 14 11.8214 -8.8506 6.5253 25 1 12.0929 -8.6949 5.0737 26 1 13.1019 -9.0574 7.2485 27 1 10.9362 -10.0232 6.7408 28 6 8.1239 -0.7691 5.7832 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 2.8405 -2.4373 0.0309 37 1 2.5950 -2.8285 1.8165 38 1 6.0274 -0.9600 2.3142 39 1 5.6644 0.1779 4.8735 40 1 5.5181 -1.5899 5.0198 41 1 7.9281 -0.2889 3.6293 42 1 7.2516 -3.0674 4.8374 43 1 8.3730 -2.6933 3.4561 44 1 9.7762 -2.4089 7.2513 45 1 8.1866 -3.1179 6.8788 46 1 9.8525 -5.0619 7.7197 47 1 10.8369 -7.9653 9.0396 48 1 8.6600 0.1696 5.9235 49 1 7.4580 -1.0078 6.6125 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753412144.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:23 Heat of formation + Delta-G solvation = -54.164660 kcal Electronic energy + Delta-G solvation = -26522.189664 eV Core-core repulsion = 22677.446409 eV Total energy + Delta-G solvation = -3844.743255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50199 -40.90279 -39.57030 -38.48442 -36.05125 -35.73467 -34.22363 -33.33938 -32.11568 -28.95802 -27.99960 -27.09007 -26.87419 -25.23562 -23.82457 -23.45216 -21.54622 -21.02022 -20.72198 -20.36801 -19.90407 -18.32064 -17.85713 -17.41115 -16.71822 -16.65372 -16.46839 -16.23231 -15.91354 -15.73372 -15.54645 -15.17620 -15.00454 -14.64580 -14.29724 -13.98494 -13.75703 -13.60289 -13.56127 -13.48378 -13.34936 -13.09801 -13.00118 -12.87155 -12.44269 -12.35240 -12.17161 -12.13283 -12.04926 -11.79594 -11.68270 -11.56155 -11.51669 -11.22330 -11.05491 -10.81032 -10.35263 -10.13690 -10.03867 -9.69471 -8.49002 -5.97943 1.34821 1.40033 1.46542 1.54391 2.02120 2.09567 2.27148 2.80503 2.85725 3.17394 3.24694 3.43355 3.60998 3.69049 3.77160 3.84187 4.08970 4.14267 4.17768 4.21650 4.29064 4.38643 4.39953 4.45664 4.48443 4.50436 4.60689 4.67827 4.68168 4.82348 4.85116 4.87232 4.88321 4.95986 5.04413 5.06959 5.21066 5.23343 5.28576 5.36917 5.39666 5.44296 5.44983 5.54457 5.88308 6.06154 6.52448 6.57384 7.10173 7.21531 7.53138 8.08579 8.68670 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.019113 B = 0.001917 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.647488 B =14599.838133 C =15446.694241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.114 4.114 5 H 0.091 0.909 6 C -0.142 4.142 7 C -0.190 4.190 8 H 0.150 0.850 9 C 0.536 3.464 10 O -0.589 6.589 11 N -0.714 5.714 12 C 0.134 3.866 13 C -0.104 4.104 14 C 0.019 3.981 15 N -0.481 5.481 16 C 0.022 3.978 17 C 0.440 3.560 18 O -0.618 6.618 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.015 3.985 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.416 0.584 39 H 0.077 0.923 40 H 0.052 0.948 41 H 0.122 0.878 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.073 0.927 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.112 0.888 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.939 16.877 -13.759 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 C -0.204 4.204 4 C -0.133 4.133 5 H 0.110 0.890 6 C -0.180 4.180 7 C -0.211 4.211 8 H 0.167 0.833 9 C 0.324 3.676 10 O -0.470 6.470 11 N -0.365 5.365 12 C 0.010 3.990 13 C -0.123 4.123 14 C -0.110 4.110 15 N -0.204 5.204 16 C -0.109 4.109 17 C 0.227 3.773 18 O -0.504 6.504 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.114 4.114 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.252 0.748 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.127 0.873 45 H 0.091 0.909 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.130 0.870 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.533 16.904 -13.897 27.426 hybrid contribution 0.038 -1.356 0.856 1.604 sum -16.495 15.547 -13.041 26.151 Atomic orbital electron populations 1.21809 0.94382 1.02049 1.02019 1.20758 0.96197 0.95973 0.95159 1.21830 1.01270 0.95483 1.01783 1.22444 0.91368 0.99223 1.00276 0.89044 1.23168 1.00661 0.90273 1.03872 1.22320 0.96789 1.07430 0.94525 0.83278 1.20223 0.82080 0.74692 0.90595 1.90676 1.58400 1.51513 1.46372 1.45881 1.07190 1.73493 1.09947 1.21312 0.92214 1.01982 0.83486 1.23136 0.93291 0.96226 0.99651 1.23854 0.92569 0.96277 0.98271 1.68434 1.35848 1.06238 1.09905 1.22350 1.00779 0.91901 0.95890 1.20752 0.84183 0.85751 0.86594 1.90481 1.58349 1.82713 1.18815 1.41960 1.53447 1.14437 1.11370 1.19698 1.36371 0.93961 0.96230 0.90328 1.26066 0.98021 1.02027 0.95265 1.69688 1.47816 1.34444 1.04219 0.84854 0.78049 0.77137 0.78194 1.19761 1.19541 1.19582 1.24078 0.94453 0.96670 0.96193 0.93353 0.91403 0.92441 0.89514 0.92355 0.91469 0.93717 0.85293 0.89768 0.74750 0.90504 0.92922 0.85991 0.92577 0.90955 0.87320 0.90902 0.77076 0.91296 0.87003 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.18 71.98 0.66 -0.85 16 2 C -0.06 -0.68 3.07 -10.79 -0.03 -0.71 16 3 C -0.15 -1.55 9.04 71.98 0.65 -0.90 16 4 C -0.11 -1.76 4.66 -10.79 -0.05 -1.81 16 5 H 0.09 1.90 7.64 -2.39 -0.02 1.88 16 6 C -0.14 -1.99 9.88 30.58 0.30 -1.69 16 7 C -0.19 -2.87 5.39 -11.55 -0.06 -2.93 16 8 H 0.15 1.44 7.61 -2.39 -0.02 1.42 16 9 C 0.54 11.79 7.61 87.66 0.67 12.46 16 10 O -0.59 -18.12 16.26 -3.04 -0.05 -18.17 16 11 N -0.71 -12.90 5.56 -463.05 -2.57 -15.48 16 12 C 0.13 2.64 5.51 86.37 0.48 3.11 16 13 C -0.10 -2.04 3.93 -10.15 -0.04 -2.08 16 14 C 0.02 0.56 6.33 86.37 0.55 1.11 16 15 N -0.48 -15.15 5.95 -911.72 -5.42 -20.57 16 16 C 0.02 0.78 5.31 85.56 0.45 1.24 16 17 C 0.44 21.29 7.59 87.66 0.67 21.96 16 18 O -0.62 -34.46 15.13 -3.08 -0.05 -34.51 16 19 N -0.57 -30.00 5.29 -306.99 -1.62 -31.62 16 20 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 23 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 24 Si 0.99 43.27 29.55 68.60 2.03 45.29 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 C 0.01 0.31 7.54 86.41 0.65 0.96 16 29 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.72 7.90 -2.38 -0.02 0.70 16 33 H 0.06 0.58 7.29 -2.39 -0.02 0.56 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.13 1.18 8.05 -2.38 -0.02 1.16 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.42 5.44 8.47 -92.71 -0.79 4.65 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.05 1.24 7.88 -2.39 -0.02 1.22 16 41 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.06 1.75 7.57 -2.39 -0.02 1.73 16 43 H 0.07 2.41 8.09 -2.39 -0.02 2.39 16 44 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 45 H 0.07 2.27 7.70 -2.39 -0.02 2.25 16 46 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 47 H 0.28 14.10 8.31 -92.70 -0.77 13.33 16 48 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.08 1.58 7.75 -2.39 -0.02 1.56 16 Total: -1.00 -74.72 403.05 -1.80 -76.52 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.57 Total: 37.19 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 6.17 Total: 11.23 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -9.33 Total: -117.55 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -0.10 Total: -52.68 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -74.72 -1.80 -76.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753412144.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.356 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds