Wall clock time and date at job start Fri Apr 10 2020 18:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47214 * 2 1 4 4 C 1.52994 * 109.47415 * 120.00399 * 2 1 3 5 5 H 1.09007 * 115.54753 * 319.38035 * 4 2 1 6 6 C 1.52998 * 117.50456 * 173.71007 * 4 2 1 7 7 C 1.53000 * 60.00065 * 252.48567 * 6 4 2 8 8 H 1.08998 * 117.49526 * 252.50676 * 7 6 4 9 9 C 1.50696 * 117.49999 * 107.48707 * 7 6 4 10 10 O 1.21280 * 119.99698 * 219.42837 * 9 7 6 11 11 N 1.34775 * 120.00004 * 39.43406 * 9 7 6 12 12 C 1.46499 * 119.99960 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47137 * 180.02562 * 12 11 9 14 14 C 1.53942 * 113.73056 * 273.76712 * 13 12 11 15 15 N 1.48192 * 86.10100 * 221.95828 * 14 13 12 16 16 C 1.46894 * 111.07238 * 137.52304 * 15 14 13 17 17 C 1.50695 * 109.47166 * 70.56454 * 16 15 14 18 18 O 1.21290 * 120.00289 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99980 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99850 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00242 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99929 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99945 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00158 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47039 * 90.00018 * 24 22 20 26 26 H 1.48498 * 109.47010 * 210.00391 * 24 22 20 27 27 H 1.48501 * 109.46926 * 329.99983 * 24 22 20 28 28 C 1.47962 * 90.79776 * 24.59883 * 15 14 13 29 29 H 1.08999 * 109.47116 * 50.90476 * 1 2 3 30 30 H 1.09000 * 109.47250 * 170.90789 * 1 2 3 31 31 H 1.09003 * 109.47179 * 290.90575 * 1 2 3 32 32 H 1.09009 * 109.46607 * 239.99839 * 2 1 3 33 33 H 1.09004 * 109.47134 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47362 * 299.99968 * 3 2 1 35 35 H 1.08996 * 109.47563 * 60.00068 * 3 2 1 36 36 H 1.09007 * 117.49131 * 359.97438 * 6 4 2 37 37 H 1.09002 * 117.50479 * 144.99005 * 6 4 2 38 38 H 0.97003 * 120.00341 * 0.02562 * 11 9 7 39 39 H 1.08999 * 109.47410 * 299.99802 * 12 11 9 40 40 H 1.09001 * 109.47423 * 60.00260 * 12 11 9 41 41 H 1.09002 * 112.94083 * 45.33411 * 13 12 11 42 42 H 1.08993 * 113.75740 * 336.23930 * 14 13 12 43 43 H 1.09004 * 113.75853 * 107.60335 * 14 13 12 44 44 H 1.09004 * 109.47294 * 190.56983 * 16 15 14 45 45 H 1.08997 * 109.47036 * 310.56440 * 16 15 14 46 46 H 0.97000 * 120.00263 * 0.02562 * 19 17 16 47 47 H 0.96995 * 120.00053 * 179.97438 * 23 22 20 48 48 H 1.09000 * 113.76018 * 221.08597 * 28 15 14 49 49 H 1.09001 * 113.85784 * 89.73853 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.4930 -0.5129 2.1686 6 6 3.5473 -0.9583 1.3622 7 6 2.6085 -2.1303 1.0693 8 1 2.4355 -2.8489 1.8704 9 6 2.6232 -2.7020 -0.3250 10 8 1.5854 -3.0441 -0.8510 11 7 3.7896 -2.8331 -0.9873 12 6 3.8040 -3.3893 -2.3425 13 6 5.2425 -3.4294 -2.8622 14 6 5.6986 -2.1170 -3.5249 15 7 6.3298 -2.9748 -4.5553 16 6 6.1032 -2.4355 -5.9027 17 6 6.9107 -1.1759 -6.0820 18 8 7.6070 -0.7678 -5.1766 19 7 6.8601 -0.5033 -7.2489 20 6 7.5952 0.6423 -7.4122 21 1 8.2151 1.0057 -6.6059 22 6 7.5434 1.3355 -8.6154 23 7 6.7894 0.8931 -9.5966 24 14 8.5444 2.8969 -8.8377 25 1 9.8837 2.5533 -9.3790 26 1 7.8452 3.8025 -9.7843 27 1 8.6998 3.5761 -7.5262 28 6 5.3803 -4.0692 -4.2554 29 1 -0.3633 0.6480 -0.7976 30 1 -0.3634 -1.0147 -0.1624 31 1 -0.3634 0.3667 0.9600 32 1 1.8933 -0.5139 -0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 4.1756 -0.6006 0.5463 37 1 3.9920 -0.9057 2.3560 38 1 4.6198 -2.5599 -0.5664 39 1 3.3962 -4.4000 -2.3248 40 1 3.1977 -2.7643 -2.9982 41 1 5.9485 -3.8190 -2.1287 42 1 4.8778 -1.5078 -3.9033 43 1 6.4118 -1.5484 -2.9280 44 1 6.4095 -3.1724 -6.6453 45 1 5.0446 -2.2097 -6.0303 46 1 6.3036 -0.8298 -7.9732 47 1 6.7530 1.3771 -10.4363 48 1 5.8397 -5.0576 -4.2413 49 1 4.4657 -4.0340 -4.8474 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753412146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:29 Heat of formation + Delta-G solvation = -27.309409 kcal Electronic energy + Delta-G solvation = -27332.115473 eV Core-core repulsion = 23488.536749 eV Total energy + Delta-G solvation = -3843.578724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.58143 -39.86797 -37.85776 -37.51807 -34.89218 -33.91097 -33.64096 -31.36323 -30.74085 -27.61592 -27.32422 -25.99116 -25.16120 -24.11123 -23.40186 -22.40309 -20.75499 -20.10783 -19.31978 -19.10381 -17.88605 -17.03917 -16.47595 -16.36862 -16.17047 -15.44911 -15.11795 -15.00241 -14.60798 -14.33930 -14.14781 -14.09682 -13.67614 -13.43368 -13.35869 -13.18497 -12.81809 -12.56601 -12.51338 -12.35456 -12.09877 -11.74268 -11.52397 -11.49846 -11.42255 -11.33191 -11.08343 -10.89956 -10.74867 -10.62163 -10.56233 -10.40428 -10.33768 -10.22406 -9.88056 -9.51348 -9.24345 -8.66391 -8.23950 -7.97405 -6.42661 -3.83548 2.41754 2.91607 3.16911 3.25533 3.31127 3.32730 3.87857 3.97989 4.15855 4.20609 4.34255 4.40253 4.54192 4.63834 4.74599 4.85179 4.94300 5.04446 5.11297 5.13625 5.22207 5.30788 5.35215 5.40148 5.41674 5.47531 5.55557 5.55739 5.59918 5.64228 5.69894 5.72670 5.75530 5.82872 5.83087 5.95806 6.03135 6.13113 6.13676 6.20065 6.25257 6.32789 6.60596 7.18900 7.31910 7.54048 8.04558 8.04746 8.60298 9.16856 9.53141 10.04730 10.75166 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.012679 B = 0.002579 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.843118 B =10855.141969 C =12187.510268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 C -0.145 4.145 4 C -0.111 4.111 5 H 0.113 0.887 6 C -0.170 4.170 7 C -0.183 4.183 8 H 0.132 0.868 9 C 0.544 3.456 10 O -0.537 6.537 11 N -0.724 5.724 12 C 0.128 3.872 13 C -0.134 4.134 14 C 0.027 3.973 15 N -0.453 5.453 16 C 0.010 3.990 17 C 0.444 3.556 18 O -0.580 6.580 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.009 3.991 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.403 0.597 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.091 0.909 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 -6.683 19.475 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.203 4.203 4 C -0.130 4.130 5 H 0.131 0.869 6 C -0.207 4.207 7 C -0.204 4.204 8 H 0.150 0.850 9 C 0.330 3.670 10 O -0.414 6.414 11 N -0.376 5.376 12 C 0.004 3.996 13 C -0.153 4.153 14 C -0.102 4.102 15 N -0.175 5.175 16 C -0.122 4.122 17 C 0.229 3.771 18 O -0.464 6.464 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.121 4.121 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.238 0.762 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.109 0.891 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.814 -6.681 19.471 22.805 hybrid contribution -0.277 0.788 -0.718 1.101 sum -10.091 -5.893 18.753 22.096 Atomic orbital electron populations 1.21771 0.94492 1.02343 1.01408 1.20748 0.96401 0.95936 0.95852 1.21815 1.01224 0.95383 1.01833 1.22443 0.95913 0.94331 1.00287 0.86910 1.23167 0.93268 1.00355 1.03871 1.22380 1.08386 0.93313 0.96295 0.85007 1.19618 0.83429 0.77676 0.86250 1.90711 1.32236 1.49620 1.68794 1.46044 1.09567 1.65062 1.16902 1.21439 0.96475 0.99153 0.82542 1.23344 0.95563 0.98822 0.97597 1.23891 0.97846 0.94344 0.94105 1.68436 1.41723 1.05071 1.02317 1.22461 0.98670 0.97774 0.93316 1.19680 0.86820 0.86268 0.84324 1.90512 1.44362 1.69811 1.41704 1.41876 1.41835 1.23513 1.12893 1.19691 1.22863 1.00316 0.99984 0.87954 1.25264 0.97709 0.99764 0.95207 1.69609 1.39318 1.40636 1.04767 0.85860 0.79280 0.80849 0.78323 1.20376 1.20921 1.19421 1.23953 0.96031 0.97875 0.94253 0.92651 0.92036 0.92869 0.91105 0.92471 0.92453 0.92616 0.87945 0.87746 0.76231 0.91197 0.91311 0.87727 0.91516 0.88822 0.89127 0.92830 0.77498 0.91857 0.89110 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.22 37.16 0.34 -0.97 16 2 C -0.07 -0.67 2.79 -90.63 -0.25 -0.92 16 3 C -0.15 -1.24 9.08 37.15 0.34 -0.91 16 4 C -0.11 -0.87 5.05 -90.62 -0.46 -1.33 16 5 H 0.11 0.74 8.13 -51.93 -0.42 0.32 16 6 C -0.17 -1.11 9.10 -26.73 -0.24 -1.35 16 7 C -0.18 -1.49 6.20 -91.77 -0.57 -2.06 16 8 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 9 C 0.54 6.02 5.68 -10.99 -0.06 5.96 16 10 O -0.54 -8.02 16.91 5.56 0.09 -7.93 16 11 N -0.72 -6.86 5.48 -60.30 -0.33 -7.19 16 12 C 0.13 1.32 5.51 -4.04 -0.02 1.30 16 13 C -0.13 -1.43 3.93 -89.68 -0.35 -1.78 16 14 C 0.03 0.39 6.33 -2.63 -0.02 0.38 16 15 N -0.45 -7.33 5.95 -239.50 -1.42 -8.76 16 16 C 0.01 0.17 5.31 -4.98 -0.03 0.15 16 17 C 0.44 10.51 7.59 -10.99 -0.08 10.43 16 18 O -0.58 -15.64 15.13 5.55 0.08 -15.55 16 19 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 24 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C 0.01 0.10 7.54 -2.76 -0.02 0.08 16 29 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.41 8.11 -51.93 -0.42 -0.01 16 32 H 0.07 0.83 6.36 -51.92 -0.33 0.50 16 33 H 0.06 0.49 7.74 -51.93 -0.40 0.08 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.71 7.73 -51.93 -0.40 0.31 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.40 3.04 7.82 -40.82 -0.32 2.72 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.81 7.88 -51.93 -0.41 0.40 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.02 7.57 -51.93 -0.39 0.62 16 43 H 0.09 1.51 8.10 -51.93 -0.42 1.09 16 44 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.05 0.86 7.70 -51.93 -0.40 0.46 16 46 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 LS Contribution 400.84 15.07 6.04 6.04 Total: -1.00 -33.33 400.84 -9.94 -43.27 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -8.38 Total: 11.45 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.67 Total: 0.96 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -1.09 Total: -54.30 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.18 Total: -23.48 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.33 -9.94 -43.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753412146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.965 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds