Wall clock time and date at job start Fri Apr 10 2020 18:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47214 * 2 1 4 4 C 1.52994 * 109.47415 * 120.00399 * 2 1 3 5 5 H 1.09007 * 115.54753 * 319.38035 * 4 2 1 6 6 C 1.52998 * 117.50456 * 173.71007 * 4 2 1 7 7 C 1.53000 * 60.00065 * 252.48567 * 6 4 2 8 8 H 1.08998 * 117.49526 * 252.50676 * 7 6 4 9 9 C 1.50696 * 117.49999 * 107.48707 * 7 6 4 10 10 O 1.21280 * 119.99698 * 219.42837 * 9 7 6 11 11 N 1.34775 * 120.00004 * 39.43406 * 9 7 6 12 12 C 1.46499 * 119.99960 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47137 * 180.02562 * 12 11 9 14 14 C 1.53942 * 113.73056 * 273.76712 * 13 12 11 15 15 N 1.48192 * 86.10100 * 221.95828 * 14 13 12 16 16 C 1.46894 * 111.07238 * 137.52304 * 15 14 13 17 17 C 1.50695 * 109.47166 * 70.56454 * 16 15 14 18 18 O 1.21290 * 120.00289 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99980 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99850 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00242 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99929 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99945 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00158 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47039 * 90.00018 * 24 22 20 26 26 H 1.48498 * 109.47010 * 210.00391 * 24 22 20 27 27 H 1.48501 * 109.46926 * 329.99983 * 24 22 20 28 28 C 1.47962 * 90.79776 * 24.59883 * 15 14 13 29 29 H 1.08999 * 109.47116 * 50.90476 * 1 2 3 30 30 H 1.09000 * 109.47250 * 170.90789 * 1 2 3 31 31 H 1.09003 * 109.47179 * 290.90575 * 1 2 3 32 32 H 1.09009 * 109.46607 * 239.99839 * 2 1 3 33 33 H 1.09004 * 109.47134 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47362 * 299.99968 * 3 2 1 35 35 H 1.08996 * 109.47563 * 60.00068 * 3 2 1 36 36 H 1.09007 * 117.49131 * 359.97438 * 6 4 2 37 37 H 1.09002 * 117.50479 * 144.99005 * 6 4 2 38 38 H 0.97003 * 120.00341 * 0.02562 * 11 9 7 39 39 H 1.08999 * 109.47410 * 299.99802 * 12 11 9 40 40 H 1.09001 * 109.47423 * 60.00260 * 12 11 9 41 41 H 1.09002 * 112.94083 * 45.33411 * 13 12 11 42 42 H 1.08993 * 113.75740 * 336.23930 * 14 13 12 43 43 H 1.09004 * 113.75853 * 107.60335 * 14 13 12 44 44 H 1.09004 * 109.47294 * 190.56983 * 16 15 14 45 45 H 1.08997 * 109.47036 * 310.56440 * 16 15 14 46 46 H 0.97000 * 120.00263 * 0.02562 * 19 17 16 47 47 H 0.96995 * 120.00053 * 179.97438 * 23 22 20 48 48 H 1.09000 * 113.76018 * 221.08597 * 28 15 14 49 49 H 1.09001 * 113.85784 * 89.73853 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.4930 -0.5129 2.1686 6 6 3.5473 -0.9583 1.3622 7 6 2.6085 -2.1303 1.0693 8 1 2.4355 -2.8489 1.8704 9 6 2.6232 -2.7020 -0.3250 10 8 1.5854 -3.0441 -0.8510 11 7 3.7896 -2.8331 -0.9873 12 6 3.8040 -3.3893 -2.3425 13 6 5.2425 -3.4294 -2.8622 14 6 5.6986 -2.1170 -3.5249 15 7 6.3298 -2.9748 -4.5553 16 6 6.1032 -2.4355 -5.9027 17 6 6.9107 -1.1759 -6.0820 18 8 7.6070 -0.7678 -5.1766 19 7 6.8601 -0.5033 -7.2489 20 6 7.5952 0.6423 -7.4122 21 1 8.2151 1.0057 -6.6059 22 6 7.5434 1.3355 -8.6154 23 7 6.7894 0.8931 -9.5966 24 14 8.5444 2.8969 -8.8377 25 1 9.8837 2.5533 -9.3790 26 1 7.8452 3.8025 -9.7843 27 1 8.6998 3.5761 -7.5262 28 6 5.3803 -4.0692 -4.2554 29 1 -0.3633 0.6480 -0.7976 30 1 -0.3634 -1.0147 -0.1624 31 1 -0.3634 0.3667 0.9600 32 1 1.8933 -0.5139 -0.8901 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 4.1756 -0.6006 0.5463 37 1 3.9920 -0.9057 2.3560 38 1 4.6198 -2.5599 -0.5664 39 1 3.3962 -4.4000 -2.3248 40 1 3.1977 -2.7643 -2.9982 41 1 5.9485 -3.8190 -2.1287 42 1 4.8778 -1.5078 -3.9033 43 1 6.4118 -1.5484 -2.9280 44 1 6.4095 -3.1724 -6.6453 45 1 5.0446 -2.2097 -6.0303 46 1 6.3036 -0.8298 -7.9732 47 1 6.7530 1.3771 -10.4363 48 1 5.8397 -5.0576 -4.2413 49 1 4.4657 -4.0340 -4.8474 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753412146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:28 Heat of formation + Delta-G solvation = -52.085603 kcal Electronic energy + Delta-G solvation = -27333.189850 eV Core-core repulsion = 23488.536749 eV Total energy + Delta-G solvation = -3844.653100 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.54386 -40.94834 -39.55714 -38.38040 -36.05109 -35.74013 -34.35931 -33.33393 -32.04527 -28.84905 -28.05569 -27.08981 -26.82741 -25.17106 -24.03223 -23.56843 -21.53583 -21.07858 -20.89111 -20.13598 -19.88262 -17.92097 -17.80776 -17.34228 -17.14513 -16.67540 -16.59179 -16.25479 -16.11399 -15.56584 -15.35988 -15.14783 -14.84371 -14.76357 -14.31497 -14.10580 -13.95499 -13.69833 -13.55160 -13.41522 -13.18213 -13.09643 -13.01232 -12.86569 -12.45089 -12.36371 -12.17733 -12.13919 -12.12473 -11.81866 -11.68256 -11.60300 -11.50862 -11.31478 -10.98159 -10.73096 -10.34986 -10.12723 -10.03821 -9.69390 -8.48650 -5.97632 1.36411 1.40049 1.52919 1.57729 2.02475 2.13773 2.27348 2.71857 2.80523 3.17871 3.25132 3.43307 3.53853 3.67295 3.74882 3.88388 4.04076 4.14545 4.17697 4.21600 4.28541 4.36631 4.39517 4.47269 4.48477 4.50337 4.60611 4.65478 4.69270 4.77756 4.83748 4.87800 4.90094 4.92668 4.98511 5.02646 5.18800 5.21642 5.24816 5.36709 5.39106 5.40090 5.42619 5.47126 5.88331 6.06137 6.53334 6.57683 7.10334 7.22799 7.53373 8.08777 8.68940 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.012679 B = 0.002579 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.843118 B =10855.141969 C =12187.510268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.072 4.072 3 C -0.142 4.142 4 C -0.117 4.117 5 H 0.132 0.868 6 C -0.151 4.151 7 C -0.189 4.189 8 H 0.150 0.850 9 C 0.541 3.459 10 O -0.582 6.582 11 N -0.716 5.716 12 C 0.134 3.866 13 C -0.104 4.104 14 C 0.020 3.980 15 N -0.480 5.480 16 C 0.022 3.978 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.015 3.985 29 H 0.051 0.949 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.414 0.586 39 H 0.077 0.923 40 H 0.052 0.948 41 H 0.121 0.879 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.073 0.927 46 H 0.395 0.605 47 H 0.278 0.722 48 H 0.112 0.888 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.180 -7.119 20.783 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C -0.199 4.199 4 C -0.136 4.136 5 H 0.150 0.850 6 C -0.188 4.188 7 C -0.210 4.210 8 H 0.167 0.833 9 C 0.328 3.672 10 O -0.462 6.462 11 N -0.368 5.368 12 C 0.010 3.990 13 C -0.123 4.123 14 C -0.109 4.109 15 N -0.203 5.203 16 C -0.110 4.110 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.114 4.114 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.148 0.852 38 H 0.250 0.750 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.139 0.861 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.127 0.873 45 H 0.090 0.910 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.130 0.870 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.764 -7.135 20.778 24.041 hybrid contribution -0.295 0.899 -1.119 1.465 sum -10.059 -6.235 19.659 22.947 Atomic orbital electron populations 1.21741 0.94537 1.01135 1.02311 1.20709 0.96426 0.96334 0.95626 1.21785 1.01119 0.94885 1.02142 1.22517 0.97209 0.93812 1.00053 0.85032 1.23245 0.92393 0.98240 1.04925 1.22388 1.09858 0.93935 0.94779 0.83283 1.20150 0.82900 0.76890 0.87236 1.90686 1.33743 1.51697 1.70065 1.46002 1.09875 1.64389 1.16509 1.21305 0.95817 0.99185 0.82710 1.23137 0.95838 0.95741 0.97618 1.23845 0.96989 0.95708 0.94358 1.68439 1.43899 1.06642 1.01308 1.22354 0.98406 0.95029 0.95195 1.20733 0.86165 0.87331 0.82997 1.90478 1.45940 1.71168 1.42701 1.41961 1.42080 1.23449 1.13751 1.19657 1.24271 1.02138 1.00199 0.90319 1.26057 0.98397 1.02424 0.94436 1.69672 1.39790 1.41697 1.05088 0.84928 0.78071 0.77144 0.78211 1.19588 1.19519 1.19660 1.24075 0.95669 0.97365 0.94298 0.93028 0.93925 0.90980 0.94097 0.92560 0.93395 0.91042 0.88605 0.85223 0.74963 0.90466 0.93009 0.86053 0.92658 0.90961 0.87326 0.90956 0.77095 0.91279 0.87016 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.22 71.98 0.66 -1.91 16 2 C -0.07 -1.35 2.79 -10.80 -0.03 -1.38 16 3 C -0.14 -2.35 9.08 71.98 0.65 -1.70 16 4 C -0.12 -1.64 5.05 -10.80 -0.05 -1.70 16 5 H 0.13 1.37 8.13 -2.38 -0.02 1.35 16 6 C -0.15 -1.64 9.10 30.59 0.28 -1.36 16 7 C -0.19 -2.79 6.20 -11.54 -0.07 -2.86 16 8 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 9 C 0.54 11.74 5.68 87.66 0.50 12.24 16 10 O -0.58 -17.69 16.91 -3.03 -0.05 -17.74 16 11 N -0.72 -12.99 5.48 -463.07 -2.54 -15.52 16 12 C 0.13 2.64 5.51 86.38 0.48 3.11 16 13 C -0.10 -2.06 3.93 -10.15 -0.04 -2.10 16 14 C 0.02 0.58 6.33 86.37 0.55 1.13 16 15 N -0.48 -15.07 5.95 -911.63 -5.42 -20.49 16 16 C 0.02 0.76 5.31 85.56 0.45 1.22 16 17 C 0.44 21.26 7.59 87.66 0.67 21.93 16 18 O -0.62 -34.28 15.13 -3.06 -0.05 -34.33 16 19 N -0.57 -29.98 5.29 -306.99 -1.62 -31.60 16 20 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 23 N -0.92 -50.24 13.05 21.66 0.28 -49.96 16 24 Si 0.99 43.16 29.55 68.60 2.03 45.19 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 28 C 0.01 0.31 7.54 86.41 0.65 0.96 16 29 H 0.05 0.95 8.12 -2.39 -0.02 0.93 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.02 8.11 -2.39 -0.02 1.01 16 32 H 0.04 1.00 6.36 -2.38 -0.02 0.98 16 33 H 0.06 0.92 7.74 -2.39 -0.02 0.91 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 1.19 7.73 -2.38 -0.02 1.18 16 37 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.41 5.69 7.82 -92.71 -0.72 4.97 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.05 1.22 7.88 -2.39 -0.02 1.20 16 41 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.06 1.73 7.57 -2.39 -0.02 1.71 16 43 H 0.07 2.40 8.10 -2.38 -0.02 2.38 16 44 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 45 H 0.07 2.26 7.70 -2.39 -0.02 2.24 16 46 H 0.40 19.64 7.90 -92.71 -0.73 18.90 16 47 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 48 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.08 1.58 7.75 -2.39 -0.02 1.56 16 Total: -1.00 -74.31 400.84 -1.90 -76.21 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: -0.51 Total: 39.20 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 5.97 Total: 9.03 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -9.30 Total: -117.57 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -0.10 Total: -52.07 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -74.31 -1.90 -76.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753412146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.126 kcal (2) G-P(sol) polarization free energy of solvation -74.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds