Wall clock time and date at job start Fri Apr 10 2020 18:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 119.99951 * 2 1 4 4 H 1.48507 * 109.47056 * 240.00130 * 3 2 1 5 5 H 1.48497 * 109.46874 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47096 * 120.00299 * 3 2 1 7 7 C 1.38950 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99729 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00439 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00449 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99802 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00364 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47219 * 180.02562 * 12 10 9 14 14 C 1.46894 * 111.00103 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47344 * 179.97438 * 14 13 12 16 16 C 1.31004 * 119.99903 * 124.99670 * 15 14 13 17 17 C 1.50700 * 119.99903 * 179.97438 * 16 15 14 18 18 N 1.46500 * 109.47185 * 124.99974 * 17 16 15 19 19 C 1.34775 * 120.00007 * 180.02562 * 18 17 16 20 20 O 1.21274 * 120.00125 * 0.02562 * 19 18 17 21 21 C 1.50704 * 120.00070 * 180.02562 * 19 18 17 22 22 C 1.53007 * 109.46736 * 300.00281 * 21 19 18 23 23 C 1.53005 * 109.46768 * 180.02562 * 22 21 19 24 24 C 1.52997 * 109.47433 * 59.99203 * 23 22 21 25 25 C 1.53001 * 109.47329 * 300.00293 * 24 23 22 26 26 C 1.52992 * 109.47108 * 179.97438 * 21 19 18 27 27 H 0.96994 * 119.99866 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99735 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.46584 * 59.99973 * 12 10 9 30 30 H 1.09001 * 109.47253 * 300.00332 * 12 10 9 31 31 H 1.00904 * 111.00040 * 303.95621 * 13 12 10 32 32 H 1.08999 * 109.47576 * 59.99426 * 14 13 12 33 33 H 1.09006 * 109.47025 * 300.00216 * 14 13 12 34 34 H 1.07999 * 119.99988 * 304.99597 * 15 14 13 35 35 H 1.07995 * 120.00080 * 359.72973 * 16 15 14 36 36 H 1.09000 * 109.46979 * 245.00349 * 17 16 15 37 37 H 1.08997 * 109.47064 * 5.00286 * 17 16 15 38 38 H 0.96998 * 119.99742 * 0.02562 * 18 17 16 39 39 H 1.09005 * 109.46790 * 59.99613 * 21 19 18 40 40 H 1.09004 * 109.46475 * 299.99508 * 22 21 19 41 41 H 1.08991 * 109.47149 * 59.99944 * 22 21 19 42 42 H 1.09005 * 109.46620 * 299.99247 * 23 22 21 43 43 H 1.08992 * 109.47081 * 180.02562 * 23 22 21 44 44 H 1.08993 * 109.47062 * 180.02562 * 24 23 22 45 45 H 1.09011 * 109.46778 * 60.00343 * 24 23 22 46 46 H 1.08996 * 109.46799 * 299.99607 * 25 24 23 47 47 H 1.09005 * 109.46763 * 179.97438 * 25 24 23 48 48 H 1.08997 * 109.47370 * 299.99524 * 26 21 19 49 49 H 1.08997 * 109.47165 * 60.00213 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2830 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8630 0.0000 13 7 2.1984 -5.9795 0.0005 14 6 1.4982 -7.2708 0.0005 15 6 2.5077 -8.3897 0.0004 16 6 2.4634 -9.3120 0.9297 17 6 3.4726 -10.4312 0.9293 18 7 4.1510 -10.4776 2.2269 19 6 5.1013 -11.4050 2.4577 20 8 5.3952 -12.2008 1.5911 21 6 5.7988 -11.4531 3.7928 22 6 6.5117 -10.1227 4.0439 23 6 7.2203 -10.1718 5.3991 24 6 8.2454 -11.3075 5.3978 25 6 7.5324 -12.6378 5.1467 26 6 6.8234 -12.5892 3.7923 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3906 -0.0005 29 1 0.6168 -4.9209 -0.8897 30 1 0.6175 -4.9205 0.8903 31 1 2.8334 -5.9128 -0.7809 32 1 0.8735 -7.3455 -0.8896 33 1 0.8730 -7.3451 0.8903 34 1 3.2677 -8.4313 -0.7658 35 1 1.7062 -9.2680 1.6985 36 1 2.9642 -11.3787 0.7510 37 1 4.2062 -10.2586 0.1418 38 1 3.9162 -9.8408 2.9199 39 1 5.0650 -11.6263 4.5800 40 1 7.2454 -9.9495 3.2566 41 1 5.7814 -9.3136 4.0444 42 1 6.4868 -10.3452 6.1865 43 1 7.7278 -9.2240 5.5782 44 1 8.7499 -11.3427 6.3633 45 1 8.9789 -11.1340 4.6103 46 1 6.7991 -12.8112 5.9341 47 1 8.2629 -13.4469 5.1453 48 1 6.3151 -13.5368 3.6136 49 1 7.5572 -12.4164 3.0050 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754089305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:39 Heat of formation + Delta-G solvation = -86.288658 kcal Electronic energy + Delta-G solvation = -25858.198995 eV Core-core repulsion = 22012.062739 eV Total energy + Delta-G solvation = -3846.136256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.43513 -38.36161 -37.99306 -36.70453 -35.24086 -33.92787 -32.95232 -31.45243 -31.21110 -31.06287 -28.45761 -26.19331 -24.48978 -23.59290 -22.91558 -22.40273 -20.86344 -20.26154 -19.76590 -19.13254 -17.89768 -17.47837 -16.44750 -16.22433 -15.73175 -15.57152 -15.16905 -14.81814 -14.51256 -14.48845 -14.43690 -14.36175 -13.88974 -13.71560 -13.62196 -13.28106 -12.95931 -12.69994 -12.55206 -12.50156 -12.26037 -11.79073 -11.64154 -11.59334 -11.52416 -11.49414 -11.20518 -11.03368 -11.00760 -10.80045 -10.47617 -10.45508 -10.23074 -10.03698 -9.54082 -9.51420 -9.18663 -8.49043 -8.08058 -7.97782 -6.43286 -3.84229 1.83267 2.42451 3.12393 3.19042 3.24825 3.29299 3.88786 4.10515 4.25632 4.30423 4.34504 4.36063 4.65150 4.79740 4.81430 4.83071 4.88835 5.01587 5.09202 5.10327 5.13877 5.22200 5.24316 5.26901 5.35590 5.41617 5.47798 5.49723 5.66823 5.67055 5.70402 5.74081 5.77064 5.81149 5.87097 5.93708 5.93835 6.06529 6.15220 6.23378 6.42067 6.57873 7.14563 7.27092 7.53481 7.59772 7.99950 8.04273 8.59433 9.16072 9.52275 10.03759 10.74324 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.001737 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.464751 B =16115.387265 C =17588.568020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.665 5.665 14 C 0.082 3.918 15 C -0.111 4.111 16 C -0.184 4.184 17 C 0.152 3.848 18 N -0.725 5.725 19 C 0.516 3.484 20 O -0.543 6.543 21 C -0.105 4.105 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.120 4.120 26 C -0.099 4.099 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.350 0.650 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.403 0.597 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.218 -23.883 8.879 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.298 5.298 14 C -0.047 4.047 15 C -0.130 4.130 16 C -0.203 4.203 17 C 0.029 3.971 18 N -0.377 5.377 19 C 0.302 3.698 20 O -0.420 6.420 21 C -0.127 4.127 22 C -0.150 4.150 23 C -0.156 4.156 24 C -0.160 4.160 25 C -0.157 4.157 26 C -0.137 4.137 27 H 0.082 0.918 28 H 0.226 0.774 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.170 0.830 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.238 0.762 39 H 0.114 0.886 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.184 -24.267 8.914 26.832 hybrid contribution -0.859 1.219 -0.620 1.615 sum 6.326 -23.048 8.294 25.298 Atomic orbital electron populations 1.69601 1.05934 1.28285 1.50479 1.25265 0.95645 0.99736 0.97273 0.85909 0.78756 0.80410 0.79088 1.19917 1.20970 1.19865 1.19661 0.93362 0.82242 1.47750 0.87962 1.41853 1.09199 1.04587 1.64318 1.19792 0.88387 0.84710 0.84578 1.90525 1.13759 1.87053 1.55419 1.21691 0.94341 0.90952 1.01270 1.60132 1.18726 0.99477 1.51416 1.21088 0.94458 0.88173 1.00974 1.22880 0.98323 0.93597 0.98203 1.22737 1.00236 0.96867 1.00455 1.20296 0.93597 0.97635 0.85537 1.46062 1.39746 1.35081 1.16830 1.20740 0.79173 0.80108 0.89761 1.90693 1.64316 1.40264 1.46775 1.21366 0.98398 0.98105 0.94798 1.21552 0.99937 0.95078 0.98445 1.21527 0.98375 0.98927 0.96745 1.21575 0.98026 0.94699 1.01730 1.21555 0.99533 0.97516 0.97112 1.21333 0.97464 0.97333 0.97570 0.91809 0.77447 0.93784 0.89557 0.83040 0.94301 0.90503 0.86962 0.86582 0.90971 0.91167 0.76202 0.88576 0.91226 0.91176 0.91729 0.91418 0.91938 0.91837 0.91956 0.91702 0.91333 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.36 9.68 -14.94 -0.14 -8.51 16 8 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 9 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 10 C 0.44 10.33 7.82 -10.99 -0.09 10.24 16 11 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16 12 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 13 N -0.67 -10.48 6.11 -116.34 -0.71 -11.19 16 14 C 0.08 0.95 6.12 -4.98 -0.03 0.92 16 15 C -0.11 -1.13 9.38 -36.03 -0.34 -1.47 16 16 C -0.18 -1.64 9.24 -36.03 -0.33 -1.97 16 17 C 0.15 1.43 6.11 -5.19 -0.03 1.39 16 18 N -0.73 -6.41 5.44 -61.47 -0.33 -6.75 16 19 C 0.52 5.34 7.15 -10.98 -0.08 5.26 16 20 O -0.54 -7.71 15.98 5.56 0.09 -7.62 16 21 C -0.11 -0.80 2.53 -91.77 -0.23 -1.03 16 22 C -0.11 -0.79 5.10 -26.72 -0.14 -0.92 16 23 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 24 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 25 C -0.12 -0.72 5.92 -26.75 -0.16 -0.88 16 26 C -0.10 -0.78 4.49 -26.76 -0.12 -0.90 16 27 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.35 5.71 8.42 -39.29 -0.33 5.38 16 32 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.84 7.79 -51.93 -0.40 0.43 16 34 H 0.11 1.13 7.84 -52.49 -0.41 0.71 16 35 H 0.12 0.92 7.84 -52.49 -0.41 0.51 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.73 7.79 -51.93 -0.40 0.33 16 38 H 0.40 2.81 7.88 -40.82 -0.32 2.48 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.46 7.56 -51.93 -0.39 0.06 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 49 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -32.98 401.99 -9.73 -42.71 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -8.43 Total: 12.78 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.13 Total: 1.71 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.38 Total: -55.83 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.18 Total: -23.36 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.98 -9.73 -42.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754089305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.583 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds