Wall clock time and date at job start Fri Apr 10 2020 18:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 119.99951 * 2 1 4 4 H 1.48507 * 109.47056 * 240.00130 * 3 2 1 5 5 H 1.48497 * 109.46874 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47096 * 120.00299 * 3 2 1 7 7 C 1.38950 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99729 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00439 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00449 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99802 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00364 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47219 * 180.02562 * 12 10 9 14 14 C 1.46894 * 111.00103 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47344 * 179.97438 * 14 13 12 16 16 C 1.31004 * 119.99903 * 124.99670 * 15 14 13 17 17 C 1.50700 * 119.99903 * 179.97438 * 16 15 14 18 18 N 1.46500 * 109.47185 * 124.99974 * 17 16 15 19 19 C 1.34775 * 120.00007 * 180.02562 * 18 17 16 20 20 O 1.21274 * 120.00125 * 0.02562 * 19 18 17 21 21 C 1.50704 * 120.00070 * 180.02562 * 19 18 17 22 22 C 1.53007 * 109.46736 * 300.00281 * 21 19 18 23 23 C 1.53005 * 109.46768 * 180.02562 * 22 21 19 24 24 C 1.52997 * 109.47433 * 59.99203 * 23 22 21 25 25 C 1.53001 * 109.47329 * 300.00293 * 24 23 22 26 26 C 1.52992 * 109.47108 * 179.97438 * 21 19 18 27 27 H 0.96994 * 119.99866 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99735 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.46584 * 59.99973 * 12 10 9 30 30 H 1.09001 * 109.47253 * 300.00332 * 12 10 9 31 31 H 1.00904 * 111.00040 * 303.95621 * 13 12 10 32 32 H 1.08999 * 109.47576 * 59.99426 * 14 13 12 33 33 H 1.09006 * 109.47025 * 300.00216 * 14 13 12 34 34 H 1.07999 * 119.99988 * 304.99597 * 15 14 13 35 35 H 1.07995 * 120.00080 * 359.72973 * 16 15 14 36 36 H 1.09000 * 109.46979 * 245.00349 * 17 16 15 37 37 H 1.08997 * 109.47064 * 5.00286 * 17 16 15 38 38 H 0.96998 * 119.99742 * 0.02562 * 18 17 16 39 39 H 1.09005 * 109.46790 * 59.99613 * 21 19 18 40 40 H 1.09004 * 109.46475 * 299.99508 * 22 21 19 41 41 H 1.08991 * 109.47149 * 59.99944 * 22 21 19 42 42 H 1.09005 * 109.46620 * 299.99247 * 23 22 21 43 43 H 1.08992 * 109.47081 * 180.02562 * 23 22 21 44 44 H 1.08993 * 109.47062 * 180.02562 * 24 23 22 45 45 H 1.09011 * 109.46778 * 60.00343 * 24 23 22 46 46 H 1.08996 * 109.46799 * 299.99607 * 25 24 23 47 47 H 1.09005 * 109.46763 * 179.97438 * 25 24 23 48 48 H 1.08997 * 109.47370 * 299.99524 * 26 21 19 49 49 H 1.08997 * 109.47165 * 60.00213 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2830 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8630 0.0000 13 7 2.1984 -5.9795 0.0005 14 6 1.4982 -7.2708 0.0005 15 6 2.5077 -8.3897 0.0004 16 6 2.4634 -9.3120 0.9297 17 6 3.4726 -10.4312 0.9293 18 7 4.1510 -10.4776 2.2269 19 6 5.1013 -11.4050 2.4577 20 8 5.3952 -12.2008 1.5911 21 6 5.7988 -11.4531 3.7928 22 6 6.5117 -10.1227 4.0439 23 6 7.2203 -10.1718 5.3991 24 6 8.2454 -11.3075 5.3978 25 6 7.5324 -12.6378 5.1467 26 6 6.8234 -12.5892 3.7923 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3906 -0.0005 29 1 0.6168 -4.9209 -0.8897 30 1 0.6175 -4.9205 0.8903 31 1 2.8334 -5.9128 -0.7809 32 1 0.8735 -7.3455 -0.8896 33 1 0.8730 -7.3451 0.8903 34 1 3.2677 -8.4313 -0.7658 35 1 1.7062 -9.2680 1.6985 36 1 2.9642 -11.3787 0.7510 37 1 4.2062 -10.2586 0.1418 38 1 3.9162 -9.8408 2.9199 39 1 5.0650 -11.6263 4.5800 40 1 7.2454 -9.9495 3.2566 41 1 5.7814 -9.3136 4.0444 42 1 6.4868 -10.3452 6.1865 43 1 7.7278 -9.2240 5.5782 44 1 8.7499 -11.3427 6.3633 45 1 8.9789 -11.1340 4.6103 46 1 6.7991 -12.8112 5.9341 47 1 8.2629 -13.4469 5.1453 48 1 6.3151 -13.5368 3.6136 49 1 7.5572 -12.4164 3.0050 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754089305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:38 Heat of formation + Delta-G solvation = -109.719790 kcal Electronic energy + Delta-G solvation = -25859.215045 eV Core-core repulsion = 22012.062739 eV Total energy + Delta-G solvation = -3847.152306 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.20611 -40.15887 -38.64744 -37.72338 -36.35116 -35.81598 -33.93680 -33.24256 -32.06536 -31.61866 -29.59002 -27.57978 -25.96084 -24.49393 -23.57203 -23.23719 -21.62615 -21.24370 -20.76592 -20.34914 -19.86139 -18.21715 -17.88575 -17.15422 -17.00018 -16.51898 -16.44976 -15.99866 -15.88874 -15.51906 -15.22116 -15.13699 -15.01312 -14.97028 -14.75998 -14.28023 -14.07124 -13.67225 -13.50639 -13.26873 -13.21820 -13.10223 -13.02524 -12.89560 -12.70659 -12.43184 -12.23216 -12.12734 -12.04553 -12.03450 -11.57372 -11.50359 -11.35653 -11.01249 -10.83138 -10.36512 -10.34737 -10.02689 -10.00301 -9.27612 -8.46510 -5.95356 1.04385 1.40147 1.42284 1.53118 1.60851 2.05327 2.29746 2.38662 3.01148 3.20763 3.58040 3.63362 3.73943 3.77702 3.79073 4.08403 4.23649 4.27992 4.29997 4.31229 4.43123 4.46430 4.47689 4.53706 4.55708 4.58203 4.59879 4.66321 4.68383 4.71022 4.86258 4.97610 5.12461 5.16796 5.24631 5.25477 5.33856 5.38180 5.40787 5.41109 5.55776 5.65740 5.76319 5.89645 6.09768 6.36633 6.53518 6.60225 7.12579 7.22396 7.56243 8.11677 8.70489 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.015436 B = 0.001737 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.464751 B =16115.387265 C =17588.568020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.078 0.922 9 N -0.572 5.572 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.065 3.935 13 N -0.681 5.681 14 C 0.087 3.913 15 C -0.126 4.126 16 C -0.162 4.162 17 C 0.152 3.848 18 N -0.716 5.716 19 C 0.511 3.489 20 O -0.588 6.588 21 C -0.098 4.098 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.124 4.124 25 C -0.114 4.114 26 C -0.098 4.098 27 H 0.278 0.722 28 H 0.397 0.603 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.344 0.656 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.134 0.866 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.415 0.585 39 H 0.120 0.880 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.053 0.947 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.058 0.942 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.198 -24.015 10.335 26.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.209 5.209 10 C 0.224 3.776 11 O -0.512 6.512 12 C -0.068 4.068 13 N -0.314 5.314 14 C -0.041 4.041 15 C -0.146 4.146 16 C -0.181 4.181 17 C 0.029 3.971 18 N -0.368 5.368 19 C 0.299 3.701 20 O -0.468 6.468 21 C -0.119 4.119 22 C -0.148 4.148 23 C -0.153 4.153 24 C -0.161 4.161 25 C -0.152 4.152 26 C -0.136 4.136 27 H 0.087 0.913 28 H 0.231 0.769 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.162 0.838 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.126 0.874 35 H 0.152 0.848 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.252 0.748 39 H 0.138 0.862 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.120 -24.397 10.389 27.214 hybrid contribution -0.535 1.177 -1.084 1.687 sum 5.585 -23.220 9.305 25.631 Atomic orbital electron populations 1.69660 1.06782 1.29375 1.50161 1.26033 0.96561 1.02385 0.96232 0.84994 0.77770 0.76670 0.78932 1.19775 1.19453 1.19709 1.19633 0.92717 0.84088 1.50120 0.90367 1.41923 1.09355 1.04686 1.64985 1.20917 0.88264 0.86241 0.82225 1.90493 1.15953 1.87989 1.56721 1.21553 0.93967 0.87915 1.03321 1.60144 1.19060 1.00733 1.51425 1.21128 0.94626 0.86199 1.02172 1.22806 0.98708 0.94028 0.99054 1.22762 0.99723 0.95672 0.99969 1.20247 0.93455 0.97944 0.85473 1.46010 1.39101 1.34810 1.16886 1.21279 0.79000 0.79492 0.90313 1.90672 1.65705 1.42078 1.48352 1.21380 0.98574 0.98275 0.93692 1.21541 0.99734 0.94854 0.98659 1.21528 0.98567 0.99004 0.96247 1.21588 0.97924 0.94596 1.01995 1.21527 0.99755 0.97784 0.96105 1.21306 0.97154 0.97030 0.98155 0.91275 0.76902 0.91397 0.87483 0.83813 0.93006 0.89226 0.87371 0.84796 0.90881 0.92624 0.74847 0.86202 0.93000 0.90424 0.90371 0.91295 0.90769 0.92844 0.90645 0.91325 0.92274 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.08 13.05 21.66 0.28 -48.80 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 42.61 29.55 68.60 2.03 44.63 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.34 -19.00 9.68 84.04 0.81 -18.19 16 8 H 0.08 4.72 7.16 -2.90 -0.02 4.70 16 9 N -0.57 -29.06 5.29 -306.98 -1.62 -30.68 16 10 C 0.44 20.49 7.82 87.66 0.69 21.18 16 11 O -0.62 -34.55 15.78 -3.07 -0.05 -34.60 16 12 C 0.06 2.12 6.17 85.56 0.53 2.65 16 13 N -0.68 -20.50 6.11 -521.99 -3.19 -23.69 16 14 C 0.09 1.80 6.12 85.56 0.52 2.32 16 15 C -0.13 -2.39 9.38 25.64 0.24 -2.15 16 16 C -0.16 -2.57 9.24 25.64 0.24 -2.33 16 17 C 0.15 2.73 6.11 85.63 0.52 3.25 16 18 N -0.72 -11.90 5.44 -466.79 -2.54 -14.44 16 19 C 0.51 10.46 7.15 87.66 0.63 11.09 16 20 O -0.59 -17.16 15.98 -3.01 -0.05 -17.20 16 21 C -0.10 -1.39 2.53 -11.54 -0.03 -1.42 16 22 C -0.11 -1.43 5.10 30.60 0.16 -1.27 16 23 C -0.12 -1.20 5.92 30.59 0.18 -1.01 16 24 C -0.12 -1.31 5.92 30.59 0.18 -1.13 16 25 C -0.11 -1.23 5.92 30.58 0.18 -1.05 16 26 C -0.10 -1.54 4.49 30.58 0.14 -1.40 16 27 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 28 H 0.40 19.02 7.90 -92.71 -0.73 18.28 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.34 11.05 8.42 -89.69 -0.76 10.30 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.64 7.79 -2.38 -0.02 1.62 16 34 H 0.11 2.12 7.84 -2.91 -0.02 2.10 16 35 H 0.13 1.69 7.84 -2.91 -0.02 1.67 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.18 7.79 -2.39 -0.02 1.16 16 38 H 0.41 4.95 7.88 -92.71 -0.73 4.22 16 39 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.08 0.88 7.56 -2.39 -0.02 0.87 16 42 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 49 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 Total: -1.00 -72.29 401.99 -0.95 -73.24 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: -1.26 Total: 41.20 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 5.45 Total: 10.35 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -7.07 Total: -117.62 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -0.10 Total: -51.80 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -72.29 -0.95 -73.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754089305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.483 kcal (2) G-P(sol) polarization free energy of solvation -72.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds