Wall clock time and date at job start Fri Apr 10 2020 18:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47428 * 2 1 4 4 C 1.50698 * 109.47102 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99745 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99753 * 179.97438 * 4 3 2 7 7 C 1.47425 * 125.65138 * 0.02907 * 6 4 3 8 8 C 1.54908 * 104.92961 * 204.15299 * 7 6 4 9 9 C 1.55154 * 101.58289 * 322.93718 * 8 7 6 10 10 C 1.47290 * 125.79121 * 180.02562 * 6 4 3 11 11 H 1.08999 * 109.87327 * 298.36024 * 10 6 4 12 12 C 1.50699 * 109.98730 * 59.43227 * 10 6 4 13 13 O 1.21285 * 120.00081 * 359.36419 * 12 10 6 14 14 N 1.34776 * 120.00498 * 179.36700 * 12 10 6 15 15 C 1.46496 * 120.00489 * 179.97438 * 14 12 10 16 16 C 1.50692 * 109.47348 * 179.97438 * 15 14 12 17 17 C 1.31006 * 119.99873 * 125.00066 * 16 15 14 18 18 C 1.50701 * 119.99950 * 180.02562 * 17 16 15 19 19 N 1.46499 * 109.46957 * 124.99834 * 18 17 16 20 20 C 1.36942 * 119.99736 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00285 * 0.02562 * 20 19 18 22 22 C 1.38806 * 119.99947 * 180.02562 * 20 19 18 23 23 N 1.31620 * 120.00256 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99998 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47411 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46979 * 120.00271 * 24 22 20 27 27 H 1.48501 * 109.46988 * 239.99649 * 24 22 20 28 28 H 1.09006 * 109.46897 * 59.99466 * 1 2 3 29 29 H 1.08998 * 109.47509 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47320 * 300.00081 * 1 2 3 31 31 H 1.08999 * 109.46815 * 240.00038 * 2 1 3 32 32 H 1.09000 * 109.46465 * 120.00548 * 2 1 3 33 33 H 1.09001 * 109.46936 * 59.99684 * 3 2 1 34 34 H 1.09000 * 109.47095 * 300.00146 * 3 2 1 35 35 H 1.09002 * 110.36696 * 85.25946 * 7 6 4 36 36 H 1.08995 * 110.36608 * 323.04783 * 7 6 4 37 37 H 1.09008 * 111.00494 * 81.01141 * 8 7 6 38 38 H 1.08999 * 111.00647 * 204.85975 * 8 7 6 39 39 H 1.09002 * 110.72290 * 153.86663 * 9 8 7 40 40 H 1.08997 * 110.72022 * 277.13434 * 9 8 7 41 41 H 0.97004 * 119.99556 * 359.97438 * 14 12 10 42 42 H 1.09000 * 109.47337 * 300.00230 * 15 14 12 43 43 H 1.09006 * 109.47006 * 59.99509 * 15 14 12 44 44 H 1.08000 * 120.00131 * 304.99972 * 16 15 14 45 45 H 1.08000 * 119.99995 * 359.97438 * 17 16 15 46 46 H 1.08996 * 109.46981 * 244.99998 * 18 17 16 47 47 H 1.09006 * 109.47142 * 4.99694 * 18 17 16 48 48 H 0.96991 * 120.00273 * 0.02562 * 19 18 17 49 49 H 0.96999 * 120.00745 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2210 2.6095 0.0002 7 6 3.6132 3.9527 -0.0002 8 6 4.6929 4.8791 -0.6130 9 6 5.9945 4.2701 -0.0280 10 6 5.6863 2.7581 0.0002 11 1 6.1041 2.3114 0.9024 12 6 6.2715 2.0931 -1.2189 13 8 5.5445 1.5341 -2.0126 14 7 7.6028 2.1193 -1.4273 15 6 8.1717 1.4723 -2.6122 16 6 9.6687 1.6453 -2.6090 17 6 10.4494 0.5964 -2.6899 18 6 11.9465 0.7693 -2.6861 19 7 12.5289 -0.0418 -1.6141 20 6 13.8841 -0.0448 -1.4171 21 1 14.5234 0.5510 -2.0517 22 6 14.4361 -0.8136 -0.4017 23 7 13.6571 -1.5401 0.3714 24 14 16.2846 -0.8172 -0.1325 25 1 16.9314 0.0762 -1.1268 26 1 16.5861 -0.3320 1.2383 27 1 16.8057 -2.1983 -0.2944 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.3798 4.2638 1.0180 36 1 2.7128 3.9614 -0.6145 37 1 4.6879 4.8184 -1.7014 38 1 4.5592 5.9084 -0.2802 39 1 6.8441 4.4785 -0.6783 40 1 6.1771 4.6452 0.9789 41 1 8.1843 2.5666 -0.7927 42 1 7.9283 0.4100 -2.5982 43 1 7.7555 1.9286 -3.5104 44 1 10.0979 2.6339 -2.5399 45 1 10.0201 -0.3923 -2.7586 46 1 12.3517 0.4483 -3.6457 47 1 12.1906 1.8188 -2.5214 48 1 11.9549 -0.5771 -1.0444 49 1 14.0428 -2.0777 1.0807 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754208769.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:41 Heat of formation + Delta-G solvation = -50.541036 kcal Electronic energy + Delta-G solvation = -26868.618525 eV Core-core repulsion = 23024.032402 eV Total energy + Delta-G solvation = -3844.586123 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.89650 -39.03330 -37.49658 -36.18320 -34.69235 -34.56766 -32.91855 -31.99973 -30.77891 -29.92152 -28.09172 -27.00647 -24.57611 -23.87873 -22.33829 -22.13851 -21.71770 -20.47304 -19.72371 -19.09699 -17.67397 -17.37813 -17.08120 -16.27323 -16.01600 -15.52998 -15.40439 -14.94407 -14.67441 -14.25653 -14.00593 -13.97642 -13.70641 -13.57433 -13.46202 -13.23133 -13.06548 -12.93685 -12.75100 -12.24262 -12.05037 -11.97692 -11.87713 -11.78637 -11.65075 -11.45585 -11.38966 -11.03258 -10.99181 -10.84094 -10.60885 -10.06761 -10.01539 -9.91558 -9.80719 -9.25730 -8.97045 -8.87018 -8.67546 -6.94779 -5.77799 -3.07668 2.23323 2.53124 2.63440 2.67327 3.41280 3.42728 3.47993 3.50552 4.00060 4.06018 4.44409 4.48027 4.59139 4.60499 4.65102 4.72886 4.81979 4.96869 5.01407 5.14745 5.15635 5.19768 5.26993 5.28887 5.31287 5.36297 5.43468 5.44779 5.55189 5.63301 5.66177 5.75806 5.83609 5.89498 5.91569 6.02096 6.09259 6.14253 6.38762 6.47848 6.57634 6.92326 7.15701 7.25948 7.50751 7.68416 8.06237 8.25162 8.40282 9.51552 10.08148 10.43363 11.44896 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.002031 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.579138 B =13784.859951 C =14369.390220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.131 4.131 4 C 0.533 3.467 5 O -0.519 6.519 6 N -0.608 5.608 7 C 0.101 3.899 8 C -0.133 4.133 9 C -0.125 4.125 10 C 0.118 3.882 11 H 0.102 0.898 12 C 0.506 3.494 13 O -0.523 6.523 14 N -0.724 5.724 15 C 0.158 3.842 16 C -0.202 4.202 17 C -0.106 4.106 18 C 0.173 3.827 19 N -0.730 5.730 20 C -0.242 4.242 21 H 0.072 0.928 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.402 0.598 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.114 0.886 45 H 0.109 0.891 46 H 0.031 0.969 47 H 0.025 0.975 48 H 0.385 0.615 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.966 15.971 -0.127 31.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.171 4.171 4 C 0.322 3.678 5 O -0.393 6.393 6 N -0.344 5.344 7 C -0.022 4.022 8 C -0.171 4.171 9 C -0.163 4.163 10 C 0.010 3.990 11 H 0.120 0.880 12 C 0.290 3.710 13 O -0.398 6.398 14 N -0.377 5.377 15 C 0.035 3.965 16 C -0.221 4.221 17 C -0.126 4.126 18 C 0.046 3.954 19 N -0.374 5.374 20 C -0.373 4.373 21 H 0.090 0.910 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.236 0.764 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.132 0.868 45 H 0.127 0.873 46 H 0.048 0.952 47 H 0.043 0.957 48 H 0.219 0.781 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -27.060 14.908 -0.740 30.904 hybrid contribution 1.235 0.022 0.668 1.404 sum -25.825 14.931 -0.072 29.831 Atomic orbital electron populations 1.21784 0.95459 1.02007 1.01615 1.21302 0.95190 0.94639 1.03811 1.21663 0.91237 1.00230 1.03958 1.20398 0.89980 0.81997 0.75452 1.90746 1.70203 1.30374 1.47981 1.48345 1.04924 1.06217 1.74932 1.22346 0.97055 0.81767 1.01043 1.22807 0.93765 0.99185 1.01386 1.22700 0.99123 0.91216 1.03272 1.21536 0.82882 0.97116 0.97476 0.87990 1.20728 0.82395 0.80411 0.87482 1.90701 1.59626 1.43109 1.46362 1.45995 1.06957 1.57951 1.26771 1.20275 0.90802 0.97997 0.87407 1.22680 0.93356 0.99369 1.06684 1.23352 0.96822 0.98232 0.94163 1.19823 0.87558 0.95151 0.92887 1.42311 1.05008 1.54007 1.36086 1.19290 0.83348 1.22435 1.12234 0.91005 1.24780 0.97966 0.99786 0.98508 1.69679 1.33687 1.32678 1.21961 0.86088 0.85117 0.77262 0.77534 1.20509 1.21830 1.21802 0.92735 0.92346 0.92770 0.91038 0.91210 0.89195 0.89077 0.90895 0.90346 0.90310 0.89189 0.89210 0.89092 0.76394 0.91325 0.91323 0.86773 0.87281 0.95155 0.95678 0.78114 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.11 -1.02 5.22 -26.73 -0.14 -1.16 16 3 C -0.13 -1.09 4.71 -27.89 -0.13 -1.22 16 4 C 0.53 6.72 7.01 -10.99 -0.08 6.65 16 5 O -0.52 -9.09 15.06 -11.46 -0.17 -9.26 16 6 N -0.61 -6.22 2.89 -164.12 -0.47 -6.70 16 7 C 0.10 0.58 6.68 -2.53 -0.02 0.57 16 8 C -0.13 -0.68 7.08 -24.58 -0.17 -0.85 16 9 C -0.12 -0.76 6.43 -24.90 -0.16 -0.92 16 10 C 0.12 1.20 3.30 -67.96 -0.22 0.98 16 11 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 12 C 0.51 6.98 6.74 -10.99 -0.07 6.91 16 13 O -0.52 -9.39 14.85 -11.47 -0.17 -9.56 16 14 N -0.72 -8.93 5.22 -61.48 -0.32 -9.25 16 15 C 0.16 2.15 6.11 -5.20 -0.03 2.12 16 16 C -0.20 -2.82 9.24 -36.03 -0.33 -3.16 16 17 C -0.11 -1.79 9.24 -36.03 -0.33 -2.12 16 18 C 0.17 3.52 6.70 -5.19 -0.03 3.48 16 19 N -0.73 -18.91 5.59 -61.08 -0.34 -19.25 16 20 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 21 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.63 13.06 55.49 0.72 -27.91 16 24 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.80 8.10 -51.93 -0.42 0.37 16 32 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.64 7.85 -51.93 -0.41 0.23 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.37 7.47 -51.93 -0.39 -0.02 16 37 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.09 0.52 7.43 -51.93 -0.39 0.14 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.40 4.05 8.27 -40.82 -0.34 3.72 16 42 H 0.07 1.06 7.79 -51.93 -0.40 0.66 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.11 1.46 7.84 -52.49 -0.41 1.05 16 45 H 0.11 1.85 7.84 -52.49 -0.41 1.44 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.03 0.50 7.79 -51.93 -0.40 0.10 16 48 H 0.39 10.56 7.66 -40.82 -0.31 10.25 16 49 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 403.25 15.07 6.08 6.08 Total: -1.00 -37.52 403.25 -9.81 -47.33 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -8.50 Total: 7.88 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -1.61 Total: 3.12 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: -0.41 Total: -63.11 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.34 Total: -18.82 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.52 -9.81 -47.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754208769.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.211 kcal (2) G-P(sol) polarization free energy of solvation -37.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds