Wall clock time and date at job start Fri Apr 10 2020 18:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47428 * 2 1 4 4 C 1.50698 * 109.47102 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99745 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99753 * 179.97438 * 4 3 2 7 7 C 1.47425 * 125.65138 * 0.02907 * 6 4 3 8 8 C 1.54908 * 104.92961 * 204.15299 * 7 6 4 9 9 C 1.55154 * 101.58289 * 322.93718 * 8 7 6 10 10 C 1.47290 * 125.79121 * 180.02562 * 6 4 3 11 11 H 1.08999 * 109.87327 * 298.36024 * 10 6 4 12 12 C 1.50699 * 109.98730 * 59.43227 * 10 6 4 13 13 O 1.21285 * 120.00081 * 359.36419 * 12 10 6 14 14 N 1.34776 * 120.00498 * 179.36700 * 12 10 6 15 15 C 1.46496 * 120.00489 * 179.97438 * 14 12 10 16 16 C 1.50692 * 109.47348 * 179.97438 * 15 14 12 17 17 C 1.31006 * 119.99873 * 125.00066 * 16 15 14 18 18 C 1.50701 * 119.99950 * 180.02562 * 17 16 15 19 19 N 1.46499 * 109.46957 * 124.99834 * 18 17 16 20 20 C 1.36942 * 119.99736 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00285 * 0.02562 * 20 19 18 22 22 C 1.38806 * 119.99947 * 180.02562 * 20 19 18 23 23 N 1.31620 * 120.00256 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99998 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47411 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46979 * 120.00271 * 24 22 20 27 27 H 1.48501 * 109.46988 * 239.99649 * 24 22 20 28 28 H 1.09006 * 109.46897 * 59.99466 * 1 2 3 29 29 H 1.08998 * 109.47509 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47320 * 300.00081 * 1 2 3 31 31 H 1.08999 * 109.46815 * 240.00038 * 2 1 3 32 32 H 1.09000 * 109.46465 * 120.00548 * 2 1 3 33 33 H 1.09001 * 109.46936 * 59.99684 * 3 2 1 34 34 H 1.09000 * 109.47095 * 300.00146 * 3 2 1 35 35 H 1.09002 * 110.36696 * 85.25946 * 7 6 4 36 36 H 1.08995 * 110.36608 * 323.04783 * 7 6 4 37 37 H 1.09008 * 111.00494 * 81.01141 * 8 7 6 38 38 H 1.08999 * 111.00647 * 204.85975 * 8 7 6 39 39 H 1.09002 * 110.72290 * 153.86663 * 9 8 7 40 40 H 1.08997 * 110.72022 * 277.13434 * 9 8 7 41 41 H 0.97004 * 119.99556 * 359.97438 * 14 12 10 42 42 H 1.09000 * 109.47337 * 300.00230 * 15 14 12 43 43 H 1.09006 * 109.47006 * 59.99509 * 15 14 12 44 44 H 1.08000 * 120.00131 * 304.99972 * 16 15 14 45 45 H 1.08000 * 119.99995 * 359.97438 * 17 16 15 46 46 H 1.08996 * 109.46981 * 244.99998 * 18 17 16 47 47 H 1.09006 * 109.47142 * 4.99694 * 18 17 16 48 48 H 0.96991 * 120.00273 * 0.02562 * 19 18 17 49 49 H 0.96999 * 120.00745 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2210 2.6095 0.0002 7 6 3.6132 3.9527 -0.0002 8 6 4.6929 4.8791 -0.6130 9 6 5.9945 4.2701 -0.0280 10 6 5.6863 2.7581 0.0002 11 1 6.1041 2.3114 0.9024 12 6 6.2715 2.0931 -1.2189 13 8 5.5445 1.5341 -2.0126 14 7 7.6028 2.1193 -1.4273 15 6 8.1717 1.4723 -2.6122 16 6 9.6687 1.6453 -2.6090 17 6 10.4494 0.5964 -2.6899 18 6 11.9465 0.7693 -2.6861 19 7 12.5289 -0.0418 -1.6141 20 6 13.8841 -0.0448 -1.4171 21 1 14.5234 0.5510 -2.0517 22 6 14.4361 -0.8136 -0.4017 23 7 13.6571 -1.5401 0.3714 24 14 16.2846 -0.8172 -0.1325 25 1 16.9314 0.0762 -1.1268 26 1 16.5861 -0.3320 1.2383 27 1 16.8057 -2.1983 -0.2944 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.3798 4.2638 1.0180 36 1 2.7128 3.9614 -0.6145 37 1 4.6879 4.8184 -1.7014 38 1 4.5592 5.9084 -0.2802 39 1 6.8441 4.4785 -0.6783 40 1 6.1771 4.6452 0.9789 41 1 8.1843 2.5666 -0.7927 42 1 7.9283 0.4100 -2.5982 43 1 7.7555 1.9286 -3.5104 44 1 10.0979 2.6339 -2.5399 45 1 10.0201 -0.3923 -2.7586 46 1 12.3517 0.4483 -3.6457 47 1 12.1906 1.8188 -2.5214 48 1 11.9549 -0.5771 -1.0444 49 1 14.0428 -2.0777 1.0807 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754208769.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:40 Heat of formation + Delta-G solvation = -76.432997 kcal Electronic energy + Delta-G solvation = -26869.741285 eV Core-core repulsion = 23024.032402 eV Total energy + Delta-G solvation = -3845.708883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77064 -40.07562 -38.31420 -37.62991 -36.24480 -35.32092 -34.48809 -32.88492 -32.35501 -30.81406 -28.85817 -28.33964 -26.03056 -24.88363 -23.75725 -22.83553 -22.67514 -21.44378 -20.83713 -20.08030 -19.15221 -18.56538 -18.15561 -17.28733 -16.90093 -16.71528 -16.43311 -16.33856 -15.84244 -15.50461 -15.23879 -15.08298 -14.96766 -14.55093 -14.51826 -14.24716 -14.16212 -13.72487 -13.57719 -13.51181 -13.35181 -12.91948 -12.89398 -12.77689 -12.68940 -12.32117 -12.25511 -12.17203 -12.03066 -11.98398 -11.97404 -11.80037 -11.67203 -11.11397 -11.00441 -10.88327 -10.42065 -10.01900 -9.68985 -9.04010 -7.97809 -5.28474 0.99685 1.46879 1.48256 1.57188 1.58619 1.61514 1.91571 2.40414 2.55533 3.36036 3.40695 3.56488 3.68334 3.75674 3.79362 3.96357 4.03307 4.04555 4.08451 4.20188 4.27769 4.40980 4.49134 4.54394 4.60739 4.64969 4.66855 4.67562 4.75872 4.83122 4.87928 4.89808 4.91365 4.97148 5.05363 5.19905 5.22231 5.23533 5.31054 5.31504 5.43099 5.45955 5.62176 5.79078 6.23851 6.43828 6.53644 7.14442 7.25140 7.29557 8.03532 8.27286 9.25994 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.016949 B = 0.002031 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.579138 B =13784.859951 C =14369.390220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.122 4.122 4 C 0.518 3.482 5 O -0.585 6.585 6 N -0.610 5.610 7 C 0.093 3.907 8 C -0.128 4.128 9 C -0.116 4.116 10 C 0.111 3.889 11 H 0.098 0.902 12 C 0.499 3.501 13 O -0.571 6.571 14 N -0.715 5.715 15 C 0.161 3.839 16 C -0.157 4.157 17 C -0.135 4.135 18 C 0.175 3.825 19 N -0.746 5.746 20 C -0.248 4.248 21 H 0.081 0.919 22 C -0.079 4.079 23 N -0.972 5.972 24 Si 0.979 3.021 25 H -0.262 1.262 26 H -0.291 1.291 27 H -0.294 1.294 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.123 0.877 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.415 0.585 42 H 0.044 0.956 43 H 0.079 0.921 44 H 0.139 0.861 45 H 0.100 0.900 46 H 0.031 0.969 47 H 0.038 0.962 48 H 0.373 0.627 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.758 19.624 0.283 33.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.161 4.161 4 C 0.309 3.691 5 O -0.464 6.464 6 N -0.344 5.344 7 C -0.028 4.028 8 C -0.166 4.166 9 C -0.154 4.154 10 C 0.003 3.997 11 H 0.115 0.885 12 C 0.285 3.715 13 O -0.449 6.449 14 N -0.369 5.369 15 C 0.037 3.963 16 C -0.176 4.176 17 C -0.154 4.154 18 C 0.049 3.951 19 N -0.388 5.388 20 C -0.379 4.379 21 H 0.099 0.901 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.808 3.192 25 H -0.187 1.187 26 H -0.218 1.218 27 H -0.221 1.221 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.142 0.858 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.141 0.859 39 H 0.111 0.889 40 H 0.136 0.864 41 H 0.251 0.749 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.156 0.844 45 H 0.118 0.882 46 H 0.048 0.952 47 H 0.056 0.944 48 H 0.204 0.796 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -27.849 18.663 -0.352 33.526 hybrid contribution 1.411 -1.041 0.475 1.817 sum -26.438 17.622 0.122 31.773 Atomic orbital electron populations 1.21733 0.92950 1.02418 1.02985 1.21272 0.97253 0.95075 1.01441 1.21703 0.88202 0.99928 1.06287 1.21249 0.91722 0.81785 0.74384 1.90707 1.71705 1.32828 1.51172 1.48560 1.05163 1.07417 1.73293 1.22729 0.97565 0.79350 1.03174 1.22843 0.92667 1.00688 1.00366 1.22781 0.99818 0.87679 1.05131 1.21736 0.83134 0.99766 0.95024 0.88468 1.21492 0.82300 0.79643 0.88045 1.90675 1.60724 1.45172 1.48340 1.45902 1.07001 1.57450 1.26518 1.20148 0.90620 0.96960 0.88556 1.22769 0.93017 0.99512 1.02328 1.23020 0.95228 0.98842 0.98342 1.19907 0.89398 0.94662 0.91100 1.42564 1.04402 1.54637 1.37210 1.19737 0.84720 1.21660 1.11788 0.90118 1.25676 1.02676 1.00034 0.98745 1.69847 1.35626 1.33973 1.22789 0.84992 0.79613 0.77116 0.77521 1.18658 1.21837 1.22148 0.91681 0.92527 0.90948 0.94198 0.92998 0.85828 0.87257 0.88048 0.88996 0.91949 0.85851 0.88865 0.86377 0.74867 0.93742 0.90286 0.84374 0.88212 0.95152 0.94392 0.79582 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.11 -2.13 5.22 30.59 0.16 -1.97 16 3 C -0.12 -1.91 4.71 29.85 0.14 -1.77 16 4 C 0.52 13.31 7.01 87.66 0.61 13.92 16 5 O -0.58 -21.99 15.06 13.24 0.20 -21.79 16 6 N -0.61 -11.88 2.89 -791.55 -2.29 -14.17 16 7 C 0.09 0.77 6.68 86.85 0.58 1.35 16 8 C -0.13 -0.86 7.08 31.98 0.23 -0.63 16 9 C -0.12 -1.06 6.43 31.78 0.20 -0.86 16 10 C 0.11 2.19 3.30 44.54 0.15 2.34 16 11 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 12 C 0.50 13.94 6.74 87.66 0.59 14.53 16 13 O -0.57 -21.36 14.85 13.23 0.20 -21.17 16 14 N -0.72 -17.34 5.22 -466.80 -2.44 -19.78 16 15 C 0.16 4.34 6.11 85.63 0.52 4.86 16 16 C -0.16 -4.20 9.24 25.64 0.24 -3.96 16 17 C -0.13 -4.54 9.24 25.64 0.24 -4.30 16 18 C 0.17 7.05 6.70 85.63 0.57 7.62 16 19 N -0.75 -39.03 5.59 -347.17 -1.94 -40.97 16 20 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 21 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 22 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 23 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 24 Si 0.98 46.48 29.55 68.60 2.03 48.50 16 25 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 27 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 32 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 33 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.11 1.32 7.85 -2.39 -0.02 1.30 16 35 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.09 0.54 7.47 -2.39 -0.02 0.53 16 37 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.09 0.82 7.43 -2.39 -0.02 0.80 16 40 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.41 7.80 8.27 -92.71 -0.77 7.03 16 42 H 0.04 1.44 7.79 -2.39 -0.02 1.42 16 43 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 44 H 0.14 3.11 7.84 -2.91 -0.02 3.08 16 45 H 0.10 3.53 7.84 -2.91 -0.02 3.51 16 46 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.04 1.45 7.79 -2.38 -0.02 1.43 16 48 H 0.37 21.02 7.66 -92.72 -0.71 20.31 16 49 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -86.28 403.25 1.75 -84.52 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -0.54 Total: 32.66 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 6.25 Total: 12.81 kcal Atomic # 7 Polarization: -129.17 SS G_CDS: -6.39 Total: -135.55 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: 0.40 Total: -42.95 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Total: -86.28 1.75 -84.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754208769.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.090 kcal (2) G-P(sol) polarization free energy of solvation -86.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds