Wall clock time and date at job start Fri Apr 10 2020 18:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 112.85130 * 2 1 4 4 O 1.21283 * 120.00187 * 129.66647 * 3 2 1 5 5 N 1.34779 * 120.00380 * 309.67485 * 3 2 1 6 6 C 1.47425 * 125.64335 * 354.35682 * 5 3 2 7 7 C 1.54693 * 104.94038 * 204.07741 * 6 5 3 8 8 C 1.55160 * 101.67666 * 323.27907 * 7 6 5 9 9 C 1.47023 * 125.65103 * 174.67461 * 5 3 2 10 10 H 1.08997 * 109.88424 * 59.48211 * 9 5 3 11 11 C 1.52998 * 109.88134 * 298.47118 * 9 5 3 12 12 N 1.46895 * 109.47196 * 175.72483 * 11 9 5 13 13 C 1.46898 * 111.00199 * 174.79248 * 12 11 9 14 14 C 1.50702 * 109.47221 * 180.02562 * 13 12 11 15 15 O 1.21292 * 120.00039 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00015 * 179.97438 * 14 13 12 17 17 C 1.37088 * 119.99900 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00437 * 0.02562 * 17 16 14 19 19 C 1.38960 * 120.00148 * 180.02562 * 17 16 14 20 20 N 1.31415 * 119.99337 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00155 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47419 * 59.99780 * 21 19 17 23 23 H 1.48506 * 109.47099 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47294 * 299.99620 * 21 19 17 25 25 C 1.53789 * 113.61210 * 228.69819 * 2 1 3 26 26 C 1.53788 * 87.07996 * 220.01590 * 25 2 1 27 27 C 1.53783 * 87.08069 * 25.43313 * 26 25 2 28 28 H 1.08996 * 109.47282 * 288.79796 * 1 2 3 29 29 H 1.08997 * 109.47423 * 48.80005 * 1 2 3 30 30 H 1.09000 * 109.47138 * 168.80147 * 1 2 3 31 31 H 1.08990 * 110.36894 * 323.00953 * 6 5 3 32 32 H 1.09005 * 110.36290 * 85.33589 * 6 5 3 33 33 H 1.09000 * 111.10133 * 205.11205 * 7 6 5 34 34 H 1.08997 * 110.84547 * 81.34054 * 7 6 5 35 35 H 1.08999 * 110.72341 * 276.97201 * 8 7 6 36 36 H 1.09006 * 110.71589 * 153.69663 * 8 7 6 37 37 H 1.09006 * 109.47251 * 295.72934 * 11 9 5 38 38 H 1.08996 * 109.46982 * 55.72625 * 11 9 5 39 39 H 1.00896 * 111.00308 * 298.74582 * 12 11 9 40 40 H 1.09006 * 109.46731 * 300.00033 * 13 12 11 41 41 H 1.08996 * 109.47251 * 60.00020 * 13 12 11 42 42 H 0.97001 * 119.99409 * 359.97438 * 16 14 13 43 43 H 0.96999 * 119.99452 * 180.02562 * 20 19 17 44 44 H 1.08992 * 113.61443 * 334.56264 * 25 2 1 45 45 H 1.08998 * 113.61321 * 105.47551 * 25 2 1 46 46 H 1.08997 * 113.61204 * 270.88784 * 26 25 2 47 47 H 1.08991 * 113.68787 * 139.98975 * 26 25 2 48 48 H 1.08999 * 113.61803 * 220.02249 * 27 26 25 49 49 H 1.08997 * 113.61385 * 89.11265 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1151 1.3887 0.0000 4 8 2.9685 1.6872 0.8085 5 7 1.6902 2.2991 -0.8984 6 6 0.7512 2.0406 -2.0051 7 6 1.0592 3.1356 -3.0535 8 6 1.3779 4.3555 -2.1491 9 6 2.0914 3.7129 -0.9409 10 1 3.1716 3.7882 -1.0652 11 6 1.6665 4.4134 0.3512 12 7 2.1606 5.7968 0.3435 13 6 1.6676 6.5384 1.5118 14 6 2.1935 7.9501 1.4692 15 8 2.9089 8.3035 0.5557 16 7 1.8687 8.8199 2.4462 17 6 2.3475 10.1039 2.4077 18 1 2.9845 10.4186 1.5944 19 6 2.0132 11.0006 3.4152 20 7 1.2377 10.6178 4.4047 21 14 2.6650 12.7504 3.3624 22 1 2.1968 13.4158 2.1201 23 1 2.1661 13.5003 4.5432 24 1 4.1496 12.7264 3.3817 25 6 2.1459 -0.9301 -1.0586 26 6 3.1923 -1.3136 0.0011 27 6 2.1460 -0.9282 1.0601 28 1 -0.3633 0.3311 0.9728 29 1 -0.3634 0.6769 -0.7732 30 1 -0.3633 -1.0081 -0.1996 31 1 0.9255 1.0510 -2.4271 32 1 -0.2782 2.1300 -1.6578 33 1 0.1909 3.3319 -3.6825 34 1 1.9234 2.8613 -3.6584 35 1 0.4604 4.8531 -1.8352 36 1 2.0403 5.0530 -2.6619 37 1 0.5788 4.4164 0.4222 38 1 2.0849 3.8830 1.2066 39 1 3.1682 5.8207 0.2989 40 1 0.5778 6.5564 1.4974 41 1 2.0109 6.0498 2.4237 42 1 1.2963 8.5374 3.1765 43 1 1.0040 11.2439 5.1078 44 1 1.4945 -1.7548 -1.3474 45 1 2.5650 -0.4006 -1.9142 46 1 4.0710 -0.6686 0.0005 47 1 3.4454 -2.3738 0.0030 48 1 2.5650 -0.3971 1.9149 49 1 1.4945 -1.7524 1.3505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754615276.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:48 Heat of formation + Delta-G solvation = -47.768186 kcal Electronic energy + Delta-G solvation = -27851.834582 eV Core-core repulsion = 24007.368699 eV Total energy + Delta-G solvation = -3844.465883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18340 -38.94961 -38.14123 -37.00462 -35.22353 -33.79231 -32.09003 -31.21422 -30.63148 -29.68246 -26.80602 -26.00136 -25.31931 -24.37997 -23.12996 -22.45492 -21.66685 -20.32356 -19.25840 -18.54185 -17.82505 -16.89304 -16.62232 -16.09628 -15.59149 -15.45129 -15.34456 -14.63730 -14.40685 -14.29047 -14.10883 -13.85576 -13.77965 -13.49038 -13.43664 -13.31410 -12.91253 -12.77291 -12.61125 -12.20201 -12.17739 -11.71117 -11.63531 -11.54297 -11.46397 -11.34784 -11.21519 -11.03604 -10.84844 -10.82002 -10.61215 -10.52760 -10.41860 -10.18300 -9.82738 -9.46708 -8.85270 -8.39417 -8.00223 -7.92032 -6.38339 -3.79060 2.41786 2.70211 3.22595 3.27817 3.32489 3.95154 4.04923 4.09801 4.18530 4.21992 4.33842 4.49560 4.50197 4.52660 4.73496 4.76363 4.94499 5.08977 5.12865 5.18944 5.24535 5.27540 5.28733 5.31833 5.35540 5.41404 5.44115 5.56736 5.58437 5.65284 5.70378 5.78531 5.82939 5.84352 5.88436 5.90506 5.96996 6.04106 6.06990 6.19385 6.26734 6.34210 7.21912 7.36293 7.58143 7.69445 8.02153 8.09591 8.65040 9.21093 9.58050 10.09716 10.79478 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023429 B = 0.002267 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.814741 B =12349.759612 C =12933.393551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C 0.553 3.447 4 O -0.531 6.531 5 N -0.611 5.611 6 C 0.098 3.902 7 C -0.139 4.139 8 C -0.112 4.112 9 C 0.141 3.859 10 H 0.076 0.924 11 C 0.051 3.949 12 N -0.663 5.663 13 C 0.052 3.948 14 C 0.443 3.557 15 O -0.583 6.583 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.102 0.898 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.122 4.122 26 C -0.142 4.142 27 C -0.118 4.118 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.039 0.961 39 H 0.350 0.650 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 -25.450 -11.764 28.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C 0.341 3.659 4 O -0.407 6.407 5 N -0.346 5.346 6 C -0.024 4.024 7 C -0.177 4.177 8 C -0.150 4.150 9 C 0.038 3.962 10 H 0.094 0.906 11 C -0.080 4.080 12 N -0.296 5.296 13 C -0.080 4.080 14 C 0.228 3.772 15 O -0.467 6.467 16 N -0.201 5.201 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.544 5.544 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.160 4.160 26 C -0.179 4.179 27 C -0.155 4.155 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.169 0.831 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.110 0.890 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.294 -24.759 -12.116 27.897 hybrid contribution 0.321 0.353 1.285 1.371 sum -3.972 -24.406 -10.831 26.995 Atomic orbital electron populations 1.21959 0.92328 1.02866 1.03145 1.21909 0.96677 0.92015 1.00540 1.19642 0.81401 0.85178 0.79704 1.90713 1.31354 1.79853 1.38764 1.48484 1.46339 1.09715 1.30035 1.22450 0.93320 0.99559 0.87094 1.22837 1.02464 0.95226 0.97168 1.22572 1.01802 0.96587 0.94028 1.21506 0.99680 0.79188 0.95819 0.90627 1.22231 1.00283 0.89052 0.96414 1.60001 1.16641 1.11008 1.41954 1.21647 1.00709 0.93995 0.91684 1.19793 0.85987 0.86684 0.84735 1.90514 1.41196 1.78823 1.36196 1.41855 1.45125 1.10716 1.22400 1.19654 1.28153 0.86167 1.08884 0.87978 1.25269 0.96955 1.00403 0.95383 1.69611 1.36168 1.36727 1.11897 0.85909 0.79132 0.81529 0.77593 1.19893 1.21002 1.19922 1.22978 0.98337 0.98301 0.96363 1.22843 0.97517 1.01552 0.95979 1.22850 0.97574 0.97870 0.97254 0.91982 0.91145 0.91511 0.90486 0.90965 0.89721 0.90753 0.89902 0.89415 0.91205 0.94284 0.83128 0.89716 0.93892 0.77462 0.91849 0.89035 0.91292 0.89810 0.91162 0.89993 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.99 37.15 0.33 -0.65 16 2 C -0.11 -0.94 0.76 -154.85 -0.12 -1.06 16 3 C 0.55 6.73 6.40 -10.99 -0.07 6.65 16 4 O -0.53 -8.60 15.01 5.56 0.08 -8.52 16 5 N -0.61 -6.52 3.05 -163.16 -0.50 -7.01 16 6 C 0.10 0.71 5.04 -2.64 -0.01 0.70 16 7 C -0.14 -0.99 7.07 -24.70 -0.17 -1.16 16 8 C -0.11 -1.14 6.28 -24.90 -0.16 -1.29 16 9 C 0.14 1.73 3.07 -66.95 -0.21 1.52 16 10 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 11 C 0.05 0.73 5.07 -3.83 -0.02 0.71 16 12 N -0.66 -11.36 5.88 -115.06 -0.68 -12.03 16 13 C 0.05 0.99 6.16 -4.98 -0.03 0.96 16 14 C 0.44 10.80 7.82 -10.98 -0.09 10.72 16 15 O -0.58 -16.18 15.78 5.55 0.09 -16.09 16 16 N -0.56 -14.74 5.29 -10.96 -0.06 -14.79 16 17 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 18 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 19 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 20 N -0.90 -25.05 13.05 55.50 0.72 -24.33 16 21 Si 0.93 21.43 29.55 -169.99 -5.02 16.40 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.12 -0.84 6.59 -25.91 -0.17 -1.02 16 26 C -0.14 -1.15 7.75 -25.91 -0.20 -1.35 16 27 C -0.12 -1.02 7.02 -25.92 -0.18 -1.21 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.43 4.38 -51.93 -0.23 0.20 16 30 H 0.07 0.34 7.94 -51.93 -0.41 -0.07 16 31 H 0.08 0.44 6.68 -51.93 -0.35 0.10 16 32 H 0.07 0.46 6.76 -51.93 -0.35 0.11 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.89 7.79 -51.93 -0.40 0.49 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.96 8.03 -51.93 -0.42 0.54 16 38 H 0.04 0.63 6.90 -51.93 -0.36 0.28 16 39 H 0.35 6.34 8.49 -39.29 -0.33 6.00 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.39 9.82 7.90 -40.82 -0.32 9.49 16 43 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.09 0.46 7.96 -51.93 -0.41 0.04 16 45 H 0.07 0.49 7.70 -51.93 -0.40 0.09 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.90 7.41 -51.93 -0.38 0.51 16 49 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 386.96 15.07 5.83 5.83 Total: -1.00 -33.32 386.96 -8.97 -42.30 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -8.11 Total: 12.90 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.33 Total: 5.34 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.51 Total: -58.17 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: 0.17 Total: -24.61 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.32 -8.97 -42.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754615276.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.473 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds