Wall clock time and date at job start Fri Apr 10 2020 18:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 112.85130 * 2 1 4 4 O 1.21283 * 120.00187 * 129.66647 * 3 2 1 5 5 N 1.34779 * 120.00380 * 309.67485 * 3 2 1 6 6 C 1.47425 * 125.64335 * 354.35682 * 5 3 2 7 7 C 1.54693 * 104.94038 * 204.07741 * 6 5 3 8 8 C 1.55160 * 101.67666 * 323.27907 * 7 6 5 9 9 C 1.47023 * 125.65103 * 174.67461 * 5 3 2 10 10 H 1.08997 * 109.88424 * 59.48211 * 9 5 3 11 11 C 1.52998 * 109.88134 * 298.47118 * 9 5 3 12 12 N 1.46895 * 109.47196 * 175.72483 * 11 9 5 13 13 C 1.46898 * 111.00199 * 174.79248 * 12 11 9 14 14 C 1.50702 * 109.47221 * 180.02562 * 13 12 11 15 15 O 1.21292 * 120.00039 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00015 * 179.97438 * 14 13 12 17 17 C 1.37088 * 119.99900 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00437 * 0.02562 * 17 16 14 19 19 C 1.38960 * 120.00148 * 180.02562 * 17 16 14 20 20 N 1.31415 * 119.99337 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00155 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47419 * 59.99780 * 21 19 17 23 23 H 1.48506 * 109.47099 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47294 * 299.99620 * 21 19 17 25 25 C 1.53789 * 113.61210 * 228.69819 * 2 1 3 26 26 C 1.53788 * 87.07996 * 220.01590 * 25 2 1 27 27 C 1.53783 * 87.08069 * 25.43313 * 26 25 2 28 28 H 1.08996 * 109.47282 * 288.79796 * 1 2 3 29 29 H 1.08997 * 109.47423 * 48.80005 * 1 2 3 30 30 H 1.09000 * 109.47138 * 168.80147 * 1 2 3 31 31 H 1.08990 * 110.36894 * 323.00953 * 6 5 3 32 32 H 1.09005 * 110.36290 * 85.33589 * 6 5 3 33 33 H 1.09000 * 111.10133 * 205.11205 * 7 6 5 34 34 H 1.08997 * 110.84547 * 81.34054 * 7 6 5 35 35 H 1.08999 * 110.72341 * 276.97201 * 8 7 6 36 36 H 1.09006 * 110.71589 * 153.69663 * 8 7 6 37 37 H 1.09006 * 109.47251 * 295.72934 * 11 9 5 38 38 H 1.08996 * 109.46982 * 55.72625 * 11 9 5 39 39 H 1.00896 * 111.00308 * 298.74582 * 12 11 9 40 40 H 1.09006 * 109.46731 * 300.00033 * 13 12 11 41 41 H 1.08996 * 109.47251 * 60.00020 * 13 12 11 42 42 H 0.97001 * 119.99409 * 359.97438 * 16 14 13 43 43 H 0.96999 * 119.99452 * 180.02562 * 20 19 17 44 44 H 1.08992 * 113.61443 * 334.56264 * 25 2 1 45 45 H 1.08998 * 113.61321 * 105.47551 * 25 2 1 46 46 H 1.08997 * 113.61204 * 270.88784 * 26 25 2 47 47 H 1.08991 * 113.68787 * 139.98975 * 26 25 2 48 48 H 1.08999 * 113.61803 * 220.02249 * 27 26 25 49 49 H 1.08997 * 113.61385 * 89.11265 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1151 1.3887 0.0000 4 8 2.9685 1.6872 0.8085 5 7 1.6902 2.2991 -0.8984 6 6 0.7512 2.0406 -2.0051 7 6 1.0592 3.1356 -3.0535 8 6 1.3779 4.3555 -2.1491 9 6 2.0914 3.7129 -0.9409 10 1 3.1716 3.7882 -1.0652 11 6 1.6665 4.4134 0.3512 12 7 2.1606 5.7968 0.3435 13 6 1.6676 6.5384 1.5118 14 6 2.1935 7.9501 1.4692 15 8 2.9089 8.3035 0.5557 16 7 1.8687 8.8199 2.4462 17 6 2.3475 10.1039 2.4077 18 1 2.9845 10.4186 1.5944 19 6 2.0132 11.0006 3.4152 20 7 1.2377 10.6178 4.4047 21 14 2.6650 12.7504 3.3624 22 1 2.1968 13.4158 2.1201 23 1 2.1661 13.5003 4.5432 24 1 4.1496 12.7264 3.3817 25 6 2.1459 -0.9301 -1.0586 26 6 3.1923 -1.3136 0.0011 27 6 2.1460 -0.9282 1.0601 28 1 -0.3633 0.3311 0.9728 29 1 -0.3634 0.6769 -0.7732 30 1 -0.3633 -1.0081 -0.1996 31 1 0.9255 1.0510 -2.4271 32 1 -0.2782 2.1300 -1.6578 33 1 0.1909 3.3319 -3.6825 34 1 1.9234 2.8613 -3.6584 35 1 0.4604 4.8531 -1.8352 36 1 2.0403 5.0530 -2.6619 37 1 0.5788 4.4164 0.4222 38 1 2.0849 3.8830 1.2066 39 1 3.1682 5.8207 0.2989 40 1 0.5778 6.5564 1.4974 41 1 2.0109 6.0498 2.4237 42 1 1.2963 8.5374 3.1765 43 1 1.0040 11.2439 5.1078 44 1 1.4945 -1.7548 -1.3474 45 1 2.5650 -0.4006 -1.9142 46 1 4.0710 -0.6686 0.0005 47 1 3.4454 -2.3738 0.0030 48 1 2.5650 -0.3971 1.9149 49 1 1.4945 -1.7524 1.3505 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754615276.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:31:47 Heat of formation + Delta-G solvation = -71.509180 kcal Electronic energy + Delta-G solvation = -27852.864069 eV Core-core repulsion = 24007.368699 eV Total energy + Delta-G solvation = -3845.495370 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.99021 -40.24931 -39.59772 -37.93767 -36.67234 -35.81801 -33.31713 -32.89737 -31.56620 -30.49391 -28.28340 -26.62545 -26.51601 -25.75269 -24.28096 -23.31814 -22.36016 -21.38285 -20.96372 -19.96612 -19.35963 -17.97138 -17.78383 -17.19736 -16.98503 -16.57520 -16.42998 -16.12902 -15.99725 -15.40641 -15.24249 -15.02714 -14.88571 -14.73106 -14.35676 -14.16537 -14.04226 -13.63299 -13.56164 -13.44633 -13.28185 -13.22833 -12.94930 -12.86830 -12.66325 -12.45581 -12.27213 -12.13420 -11.99100 -11.88992 -11.86259 -11.57325 -11.52671 -11.23637 -11.16409 -10.73198 -10.41726 -10.05161 -9.73100 -9.44731 -8.48784 -5.98158 1.38621 1.40320 1.51306 1.52389 1.84946 2.00508 2.27916 2.89289 3.17670 3.34849 3.44809 3.54254 3.59035 3.67721 3.78376 3.87509 3.89504 4.10632 4.20656 4.22313 4.30311 4.35496 4.44716 4.48069 4.51086 4.60179 4.67385 4.72878 4.78949 4.83082 4.85152 4.86446 5.00065 5.02275 5.05235 5.12855 5.17152 5.19569 5.31813 5.33452 5.38315 5.42104 5.48587 5.77472 6.01466 6.21023 6.51466 6.56357 7.08993 7.11565 7.51622 8.06504 8.68568 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.023429 B = 0.002267 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.814741 B =12349.759612 C =12933.393551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C 0.542 3.458 4 O -0.585 6.585 5 N -0.609 5.609 6 C 0.094 3.906 7 C -0.127 4.127 8 C -0.110 4.110 9 C 0.141 3.859 10 H 0.052 0.948 11 C 0.061 3.939 12 N -0.665 5.665 13 C 0.066 3.934 14 C 0.440 3.560 15 O -0.620 6.620 16 N -0.572 5.572 17 C -0.336 4.336 18 H 0.080 0.920 19 C -0.014 4.014 20 N -0.921 5.921 21 Si 0.996 3.004 22 H -0.270 1.270 23 H -0.270 1.270 24 H -0.272 1.272 25 C -0.106 4.106 26 C -0.146 4.146 27 C -0.121 4.121 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.016 0.984 39 H 0.341 0.659 40 H 0.107 0.893 41 H 0.055 0.945 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.125 0.875 45 H 0.067 0.933 46 H 0.052 0.948 47 H 0.089 0.911 48 H 0.047 0.953 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.797 -27.052 -13.174 30.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C 0.332 3.668 4 O -0.465 6.465 5 N -0.342 5.342 6 C -0.027 4.027 7 C -0.165 4.165 8 C -0.148 4.148 9 C 0.037 3.963 10 H 0.070 0.930 11 C -0.069 4.069 12 N -0.297 5.297 13 C -0.067 4.067 14 C 0.227 3.773 15 O -0.507 6.507 16 N -0.209 5.209 17 C -0.465 4.465 18 H 0.098 0.902 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.819 3.181 22 H -0.195 1.195 23 H -0.194 1.194 24 H -0.197 1.197 25 C -0.143 4.143 26 C -0.184 4.184 27 C -0.159 4.159 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.035 0.965 39 H 0.159 0.841 40 H 0.125 0.875 41 H 0.073 0.927 42 H 0.230 0.770 43 H 0.088 0.912 44 H 0.143 0.857 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.108 0.892 48 H 0.066 0.934 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.438 -26.390 -13.543 30.353 hybrid contribution 1.000 0.827 1.742 2.172 sum -5.438 -25.563 -11.801 28.676 Atomic orbital electron populations 1.21980 0.90284 1.04767 1.02852 1.21929 0.98045 0.89788 1.01486 1.20443 0.80731 0.86668 0.78988 1.90685 1.33848 1.81022 1.40979 1.48588 1.46427 1.08610 1.30549 1.22760 0.93241 1.00848 0.85882 1.22840 1.03720 0.93156 0.96793 1.22507 1.00971 0.97649 0.93648 1.21398 0.98695 0.80579 0.95649 0.93007 1.22200 1.00554 0.87204 0.96913 1.60040 1.16058 1.12575 1.41049 1.21521 1.01699 0.90552 0.92913 1.20701 0.84787 0.88364 0.83432 1.90483 1.42686 1.80035 1.37462 1.41921 1.45445 1.10539 1.23001 1.19655 1.29617 0.87828 1.09401 0.90177 1.26102 0.96675 1.04093 0.94514 1.69677 1.36234 1.38154 1.12105 0.84950 0.78477 0.76562 0.78113 1.19479 1.19395 1.19724 1.23001 0.97691 0.98399 0.95229 1.22817 0.96781 1.02056 0.96728 1.22926 0.98285 0.98446 0.96242 0.93246 0.90168 0.88823 0.88109 0.89245 0.87136 0.90392 0.90203 0.90497 0.89992 0.96543 0.84116 0.87450 0.92723 0.77023 0.91222 0.85706 0.91410 0.92905 0.89215 0.93399 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.99 71.98 0.65 -0.82 16 2 C -0.11 -1.73 0.76 -52.40 -0.04 -1.77 16 3 C 0.54 13.33 6.40 87.66 0.56 13.89 16 4 O -0.59 -20.34 15.01 -3.04 -0.05 -20.39 16 5 N -0.61 -12.55 3.05 -788.49 -2.41 -14.96 16 6 C 0.09 1.07 5.04 86.78 0.44 1.51 16 7 C -0.13 -1.45 7.07 31.91 0.23 -1.23 16 8 C -0.11 -2.13 6.28 31.78 0.20 -1.93 16 9 C 0.14 3.50 3.07 45.34 0.14 3.64 16 10 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 11 C 0.06 1.79 5.07 86.30 0.44 2.23 16 12 N -0.67 -23.34 5.88 -517.94 -3.05 -26.39 16 13 C 0.07 2.49 6.16 85.56 0.53 3.02 16 14 C 0.44 22.01 7.82 87.66 0.69 22.69 16 15 O -0.62 -35.58 15.78 -3.07 -0.05 -35.63 16 16 N -0.57 -30.58 5.29 -306.98 -1.62 -32.20 16 17 C -0.34 -19.58 9.68 84.04 0.81 -18.77 16 18 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 19 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 20 N -0.92 -50.89 13.05 21.67 0.28 -50.60 16 21 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 C -0.11 -1.16 6.59 31.13 0.21 -0.96 16 26 C -0.15 -2.26 7.75 31.12 0.24 -2.02 16 27 C -0.12 -2.04 7.02 31.12 0.22 -1.82 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.66 4.38 -2.39 -0.01 0.65 16 30 H 0.09 0.50 7.94 -2.39 -0.02 0.48 16 31 H 0.10 0.73 6.68 -2.39 -0.02 0.72 16 32 H 0.09 0.78 6.76 -2.38 -0.02 0.77 16 33 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 1.61 7.79 -2.39 -0.02 1.59 16 36 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.08 2.18 8.03 -2.38 -0.02 2.16 16 38 H 0.02 0.56 6.90 -2.39 -0.02 0.54 16 39 H 0.34 13.01 8.49 -89.70 -0.76 12.24 16 40 H 0.11 3.61 8.14 -2.38 -0.02 3.59 16 41 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.40 20.17 7.90 -92.71 -0.73 19.44 16 43 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 44 H 0.12 0.61 7.96 -2.39 -0.02 0.59 16 45 H 0.07 0.79 7.70 -2.39 -0.02 0.77 16 46 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.05 1.13 7.41 -2.39 -0.02 1.11 16 49 H 0.11 1.27 8.10 -2.39 -0.02 1.25 16 Total: -1.00 -76.00 386.96 0.38 -75.63 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: -0.53 Total: 41.42 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 5.77 Total: 17.35 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -6.80 Total: -124.16 kcal Atomic # 8 Polarization: -55.93 SS G_CDS: -0.09 Total: -56.02 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -76.00 0.38 -75.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754615276.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.116 kcal (2) G-P(sol) polarization free energy of solvation -76.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds